Sample 3300003979

Overview

Basic Information
IMG/M Taxon OID	3300003979 Open in IMG/M
GOLD Reference (Study \| Sequencing Project \| Analysis Project)	Gs0113900 \| Gp0109516 \| Ga0063037
Sample Name	Diffuse hydrothermal vent microbial communities from Menez Gwen hydrothermal field, Mid Atlantic ridge - MGW_B
Sequencing Status	Permanent Draft
Sequencing Center	Max Planck Institute for Plant Breeding Research
Published?	N
Use Policy	Open

Dataset Contents
Total Genome Size	81812881
Sequencing Scaffolds	23
Novel Protein Genes	29
Associated Families	28

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria	6
All Organisms → cellular organisms → Bacteria → Proteobacteria	1
All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia	1
All Organisms → cellular organisms → Archaea → Euryarchaeota	1
All Organisms → Viruses → Predicted Viral	3
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	1
Not Available	8
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	1
All Organisms → cellular organisms → Bacteria → FCB group → Candidatus Marinimicrobia → Candidatus Marinimicrobia bacterium	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
Name	Diffuse Hydrothermal Vent Microbial Communities From Menez Gwen Hydrothermal Field, Mid Atlantic Ridge
Type	Environmental
Taxonomy	Environmental → Aquatic → Marine → Hydrothermal Vents → Diffuse Flow → Diffuse Hydrothermal Vent → Diffuse Hydrothermal Vent Microbial Communities From Menez Gwen Hydrothermal Field, Mid Atlantic Ridge

Alternative Ecosystem Assignments
Environment Ontology (ENVO)	marine hydrothermal vent biome → marine hydrothermal vent → hydrothermal fluid
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Subsurface (non-saline)

Location Information
Location	Mid-Atlantic Ridge
Coordinates	Lat. (^o)	N/A	Long. (^o)	N/A	Alt. (m)	N/A	Depth (m)	N/A
Location on Map

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Family	Category	Number of Sequences	3D Structure?
F006469	Metagenome / Metatranscriptome	372	Y
F007121	Metagenome / Metatranscriptome	357	Y
F010693	Metagenome	300	Y
F015260	Metagenome / Metatranscriptome	256	Y
F015611	Metagenome / Metatranscriptome	253	Y
F020787	Metagenome / Metatranscriptome	222	N
F024128	Metagenome	207	Y
F025382	Metagenome / Metatranscriptome	202	Y
F025588	Metagenome / Metatranscriptome	201	N
F029236	Metagenome / Metatranscriptome	189	Y

Scaffold	Taxonomy	Length	IMG/M Link
Ga0063037_100280	All Organisms → cellular organisms → Bacteria	23547	Open in IMG/M
Ga0063037_101165	All Organisms → cellular organisms → Bacteria → Proteobacteria	10855	Open in IMG/M
Ga0063037_101214	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia	10542	Open in IMG/M
Ga0063037_102328	All Organisms → cellular organisms → Bacteria	6683	Open in IMG/M
Ga0063037_102622	All Organisms → cellular organisms → Archaea → Euryarchaeota	6180	Open in IMG/M
Ga0063037_104629	All Organisms → Viruses → Predicted Viral	3968	Open in IMG/M
Ga0063037_104633	All Organisms → cellular organisms → Bacteria	3966	Open in IMG/M
Ga0063037_105669	All Organisms → Viruses → Predicted Viral	3345	Open in IMG/M
Ga0063037_106435	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	2991	Open in IMG/M
Ga0063037_106635	Not Available	2907	Open in IMG/M

Scaffold

Taxonomy

Length

IMG/M Link

Ga0063037_100280

All Organisms → cellular organisms → Bacteria

23547

Open in IMG/M

Ga0063037_101165

All Organisms → cellular organisms → Bacteria → Proteobacteria

10855

Open in IMG/M

Ga0063037_101214

All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia

10542

Open in IMG/M

Ga0063037_102328

All Organisms → cellular organisms → Bacteria

6683

Open in IMG/M

Ga0063037_102622

All Organisms → cellular organisms → Archaea → Euryarchaeota

6180

Open in IMG/M

Ga0063037_104629

All Organisms → Viruses → Predicted Viral

3968

Open in IMG/M

Ga0063037_104633

All Organisms → cellular organisms → Bacteria

3966

Open in IMG/M

Ga0063037_105669

All Organisms → Viruses → Predicted Viral

3345

Open in IMG/M

Ga0063037_106435

All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales

2991

Open in IMG/M

Ga0063037_106635

Not Available

2907

Open in IMG/M

Scaffold ID	Protein ID	Family	Sequence
Ga0063037_100280	Ga0063037_10028017	F041257	MQEFKPNYRPLGSEEDDVVDPRSEQPDGPFDHERFKTLTVLAHAAGQVMDRYAIKGFEGFTNRQANWACKLQSFFNLSNPFETLVLLLFTFQFSRNERFDLEMGKTEPIDRSHPLSKALMAWVWWDPSSEASRVDRFYPWEYGKERTSRMVAIASGLLPEPIDVTSSGDIPPSPPRTQ*
Ga0063037_100433	Ga0063037_1004332	F020787	MPKVRFEIYSTERGKKLIDLGELLVESGYLQSFDLDEEGTEVIFNFEVNAGFDVEKGEINMEELRSYFDAADDVGKKFTDELLRSVFDLDDTGHIWKS*
Ga0063037_101165	Ga0063037_1011655	F099438	MKKFSIISRSIASFLAVIMFMTPVSSVFAQKAVDNREITVMAERDAKDDAEESGTFLWWCGGFLLTFVIPYVGGLPLALYGYYKGGEPDGVPAVRLMDLEKAYGKGNQEAISIYTAAYEKKYTEVARKRHGKAGLIGYGLGLLLAILAFAAIIAILTGASAEDDDFTNDAIDFHLGLMGLEKA*
Ga0063037_101214	Ga0063037_1012142	F047303	MLLRLIHALFGAVLGAAIAFWFFDGFNWNLISICAGICGVLAFVWGEPFLERLKWWD*
Ga0063037_102328	Ga0063037_1023284	F062154	MQSRRNAVGVNRVKVLSVVNARPERLVNSVANGVRAPSVVNARPERLVNRAVNGVRVPSVVNVRPDLVVSVVRVDHSSVAAVVREAQVVFCGCSL*
Ga0063037_102622	Ga0063037_1026225	F097507	MKYCVVVAEKMHKKEKLGVMNWSDEWDKPCLIEQVQMRSDTGWIPSGGVSYGEHEAFSEKVWAQSMSKEEDSEEE*
Ga0063037_104629	Ga0063037_10462910	F099429	MNKLLLLLIPFLLGNSAGGLGGLVILAGGAIIGLGVIIGIIWGLIKWLT*
Ga0063037_104633	Ga0063037_1046334	F071317	MLKKITAVGLITLFAGMTAAPFIPLDDCNMPCCAGIATSCCEMDREITCATMSDCGSSVFMLIVSGPFHKSELKSSDIFSQRFVTDLGIPKIETNYIACLGNFDPGPIASMNLPLLI*
Ga0063037_105669	Ga0063037_1056693	F025382	MANVVVQAAAATPNVVKVVQAGISASNVVQSTETRGTITVNAAVDVDSSTAPNNSLLIWNANTSRYELQAFTDLPIDAGTM*
Ga0063037_106435	Ga0063037_1064352	F037771	VVRTSGPDLVVFDGYRGRHDGDRTAAAGLKALLGCEDSTYWNNCSDRGDSLKRRFDRASEWLELRLGNITDVNVIGLSMGCQLAVRFVHHASIKAPSIKFGQLLLIAPDPKYRPVGRDAEEIKAGTSSAFEEAVALWGGRGLAGPRFISGLADAANRMERTRIVYCRSDEVAEWSANVELMVDELPVTTGIELIEAIDGEVVSTEDMTVDLGVGDPELDVHDRLWESISFV*
Ga0063037_106635	Ga0063037_1066356	F047304	MEIKAQNWGAVITNNMVTEKELKKLKKRAGGFVKCPTRKAQGSKNARWGQCE*
Ga0063037_106635	Ga0063037_1066359	F015611	METTYTEFMEAKVKSWSDMKDRNVLKAAEKFKKKMRKDNVLGYTLAHQEFTIFRNEKEWNDSVKHGKDMKWIRVE*
Ga0063037_106685	Ga0063037_1066851	F007121	MLLLFGFTTPTSGGWQIVLQDELQEPTLDKLIDWVPEEVPRTVSFYFDTDADGKFDIKIAYSLIEAFPCRQNCVSRITDNGDHWLLPAPGINYYVIKKWIVYRYVDDEDWRGEYKTQQ
Ga0063037_106685	Ga0063037_1066857	F025588	MKTYDKFKKELTEDGMLHGEPGDENPSTTIHYSPNDPEIVRTASVTMTVPKYRLSESEKGCNHTCAHWRDSSWCNEYYFKCDSTYTCDSWKDSGI*
Ga0063037_108474	Ga0063037_1084742	F024128	MITKKDTKEYLEKTKRILDRGNASLSDNLKYINDTVSHLEINRFQGVGDIMYQVVAKALTINVVTGKKAFVVWAVQEENDMETAVQKAKDELRNRIVMGMPVLQFAGPEQDVRNLTEY*
Ga0063037_108474	Ga0063037_1084745	F076483	MQMISSNKLGQIFRTATFVDRITKIRTLQTFLNDTTLDIPLMRRKVTELNMRWILRNVKVNNSEHINLNKIIKLIKEII*
Ga0063037_108474	Ga0063037_1084746	F062152	MAGAHYTNDLVNHINILNQQTRDRGAVGFLTNDPDHWAEYGVYTIGDFQVYLEREHERNMYKNSLGE*
Ga0063037_108474	Ga0063037_1084748	F084713	MPKLIIEKIQNKKTYGKDMYKAVKLIDSHRLSLLETRFDEPSMLRYIQSLPNTYNYEIKNKTGV*
Ga0063037_108484	Ga0063037_1084844	F010693	MIAILVFSFVVLSTICLWLLIEQRKSWKFLIWFIPILLVLVSSTYVTYTSILGYPKVSLPQKGMYLKHHIDEPNWIYLWVLGKNNIPMSYQIVYSKGTHNALEGVKGKQEEGA
Ga0063037_109803	Ga0063037_1098032	F054935	MKRRTFIKYTSLISSAVFLPLAQLFGAKPKPKNSLTTFISDLPLQGSPFRKNCDSLDHYNDISFETMIDDIVHYRTPAKLRDKLILGIKTKDD*
Ga0063037_111679	Ga0063037_1116792	F015260	MKWTKEQLIEGSLSLVRMRSRLAMIEKKVKDKGIRMTYSERMDFRKKYSPLKKKIDDMDNEFLLNVAYNGVEGELDDSEPPPPDKEKQILKDTV*
Ga0063037_113199	Ga0063037_1131994	F029236	MDIMDNSNFMNDVMKMIEEWLASSKAWLELESARLKLGAETRLWEAENEVFSPGAGCYDWEFIDEWV*
Ga0063037_114885	Ga0063037_1148854	F029236	MEMKDNSDFMNDAKKIIEEWLASSKAWFELESARLRLEAETRVWEAENDVFSPEAGCYEWEFIDEWL*
Ga0063037_117135	Ga0063037_1171352	F097500	MNRLEAAIEKEKGISYSQRDKDLFRSHILILIHQEQESKKFKRKLGLSLFLAVGTLSLLFSQINEIANDFTVGLSDAITGDMLTTIVFSYGLLFASLALLKKPDFIFN*
Ga0063037_117539	Ga0063037_1175392	F006469	MAKIGQPPNKGTATAAGPDMNPPPYSEGEPKLKKYGPGVDGALGTTDHNGSIDNVISTQGGGWFG
Ga0063037_119214	Ga0063037_1192142	F086145	MRRIVCKGYAGCWEGIFYTQAASRGYLKLLAFFLIWQKKTTVSLKIPIIVRV*
Ga0063037_120218	Ga0063037_1202181	F049215	VRWLLIACVAYLVSCTEPMKYVTRELTIWNKYVSNGYDNYDDEIEVNLKLGSQDWFWLYDSGDRVKIYNNSSFNWQFEFPEDFDSLYVHARFYYTKDLIIELVVADTAIRMDSDKTLMFWNCGDTTVVEYPFPACLTAVDSL*
Ga0063037_124217	Ga0063037_1242172	F054945	MKWVILIYLTMWTSTPDVKKYTRLEFPANDFHECIDIASQINDITNKGHNSDVPYVRSFYWVYINMLDEIKAECVFAKPSAPAPRWLNKKQTHNER*
Ga0063037_127243	Ga0063037_1272434	F041248	MKQHGKRARQERAIERTEASILVYQEKLKSCKDDNEKKLLKKKIERAQTTI

Scaffold ID

Protein ID

Family

Sequence

Ga0063037_100280

Ga0063037_10028017

F041257

MQEFKPNYRPLGSEEDDVVDPRSEQPDGPFDHERFKTLTVLAHAAGQVMDRYAIKGFEGFTNRQANWACKLQSFFNLSNPFETLVLLLFTFQFSRNERFDLEMGKTEPIDRSHPLSKALMAWVWWDPSSEASRVDRFYPWEYGKERTSRMVAIASGLLPEPIDVTSSGDIPPSPPRTQ*

Ga0063037_100433

Ga0063037_1004332

F020787

MPKVRFEIYSTERGKKLIDLGELLVESGYLQSFDLDEEGTEVIFNFEVNAGFDVEKGEINMEELRSYFDAADDVGKKFTDELLRSVFDLDDTGHIWKS*

Ga0063037_101165

Ga0063037_1011655

F099438

MKKFSIISRSIASFLAVIMFMTPVSSVFAQKAVDNREITVMAERDAKDDAEESGTFLWWCGGFLLTFVIPYVGGLPLALYGYYKGGEPDGVPAVRLMDLEKAYGKGNQEAISIYTAAYEKKYTEVARKRHGKAGLIGYGLGLLLAILAFAAIIAILTGASAEDDDFTNDAIDFHLGLMGLEKA*

Ga0063037_101214

Ga0063037_1012142

F047303

MLLRLIHALFGAVLGAAIAFWFFDGFNWNLISICAGICGVLAFVWGEPFLERLKWWD*

Ga0063037_102328

Ga0063037_1023284

F062154

MQSRRNAVGVNRVKVLSVVNARPERLVNSVANGVRAPSVVNARPERLVNRAVNGVRVPSVVNVRPDLVVSVVRVDHSSVAAVVREAQVVFCGCSL*

Ga0063037_102622

Ga0063037_1026225

F097507

MKYCVVVAEKMHKKEKLGVMNWSDEWDKPCLIEQVQMRSDTGWIPSGGVSYGEHEAFSEKVWAQSMSKEEDSEEE*

Ga0063037_104629

Ga0063037_10462910

F099429

MNKLLLLLIPFLLGNSAGGLGGLVILAGGAIIGLGVIIGIIWGLIKWLT*

Ga0063037_104633

Ga0063037_1046334

F071317

MLKKITAVGLITLFAGMTAAPFIPLDDCNMPCCAGIATSCCEMDREITCATMSDCGSSVFMLIVSGPFHKSELKSSDIFSQRFVTDLGIPKIETNYIACLGNFDPGPIASMNLPLLI*

Ga0063037_105669

Ga0063037_1056693

F025382

MANVVVQAAAATPNVVKVVQAGISASNVVQSTETRGTITVNAAVDVDSSTAPNNSLLIWNANTSRYELQAFTDLPIDAGTM*

Ga0063037_106435

Ga0063037_1064352

F037771

VVRTSGPDLVVFDGYRGRHDGDRTAAAGLKALLGCEDSTYWNNCSDRGDSLKRRFDRASEWLELRLGNITDVNVIGLSMGCQLAVRFVHHASIKAPSIKFGQLLLIAPDPKYRPVGRDAEEIKAGTSSAFEEAVALWGGRGLAGPRFISGLADAANRMERTRIVYCRSDEVAEWSANVELMVDELPVTTGIELIEAIDGEVVSTEDMTVDLGVGDPELDVHDRLWESISFV*

Ga0063037_106635

Ga0063037_1066356

F047304

MEIKAQNWGAVITNNMVTEKELKKLKKRAGGFVKCPTRKAQGSKNARWGQCE*

Ga0063037_106635

Ga0063037_1066359

F015611

METTYTEFMEAKVKSWSDMKDRNVLKAAEKFKKKMRKDNVLGYTLAHQEFTIFRNEKEWNDSVKHGKDMKWIRVE*

Ga0063037_106685

Ga0063037_1066851

F007121

MLLLFGFTTPTSGGWQIVLQDELQEPTLDKLIDWVPEEVPRTVSFYFDTDADGKFDIKIAYSLIEAFPCRQNCVSRITDNGDHWLLPAPGINYYVIKKWIVYRYVDDEDWRGEYKTQQ

Ga0063037_106685

Ga0063037_1066857

F025588

MKTYDKFKKELTEDGMLHGEPGDENPSTTIHYSPNDPEIVRTASVTMTVPKYRLSESEKGCNHTCAHWRDSSWCNEYYFKCDSTYTCDSWKDSGI*

Ga0063037_108474

Ga0063037_1084742

F024128

MITKKDTKEYLEKTKRILDRGNASLSDNLKYINDTVSHLEINRFQGVGDIMYQVVAKALTINVVTGKKAFVVWAVQEENDMETAVQKAKDELRNRIVMGMPVLQFAGPEQDVRNLTEY*

Ga0063037_108474

Ga0063037_1084745

F076483

MQMISSNKLGQIFRTATFVDRITKIRTLQTFLNDTTLDIPLMRRKVTELNMRWILRNVKVNNSEHINLNKIIKLIKEII*

Ga0063037_108474

Ga0063037_1084746

F062152

MAGAHYTNDLVNHINILNQQTRDRGAVGFLTNDPDHWAEYGVYTIGDFQVYLEREHERNMYKNSLGE*

Ga0063037_108474

Ga0063037_1084748

F084713

MPKLIIEKIQNKKTYGKDMYKAVKLIDSHRLSLLETRFDEPSMLRYIQSLPNTYNYEIKNKTGV*

Ga0063037_108484

Ga0063037_1084844

F010693

MIAILVFSFVVLSTICLWLLIEQRKSWKFLIWFIPILLVLVSSTYVTYTSILGYPKVSLPQKGMYLKHHIDEPNWIYLWVLGKNNIPMSYQIVYSKGTHNALEGVKGKQEEGA

Ga0063037_109803

Ga0063037_1098032

F054935

MKRRTFIKYTSLISSAVFLPLAQLFGAKPKPKNSLTTFISDLPLQGSPFRKNCDSLDHYNDISFETMIDDIVHYRTPAKLRDKLILGIKTKDD*

Ga0063037_111679

Ga0063037_1116792

F015260

MKWTKEQLIEGSLSLVRMRSRLAMIEKKVKDKGIRMTYSERMDFRKKYSPLKKKIDDMDNEFLLNVAYNGVEGELDDSEPPPPDKEKQILKDTV*

Ga0063037_113199

Ga0063037_1131994

F029236

MDIMDNSNFMNDVMKMIEEWLASSKAWLELESARLKLGAETRLWEAENEVFSPGAGCYDWEFIDEWV*

Ga0063037_114885

Ga0063037_1148854

F029236

MEMKDNSDFMNDAKKIIEEWLASSKAWFELESARLRLEAETRVWEAENDVFSPEAGCYEWEFIDEWL*

Ga0063037_117135

Ga0063037_1171352

F097500

MNRLEAAIEKEKGISYSQRDKDLFRSHILILIHQEQESKKFKRKLGLSLFLAVGTLSLLFSQINEIANDFTVGLSDAITGDMLTTIVFSYGLLFASLALLKKPDFIFN*

Ga0063037_117539

Ga0063037_1175392

F006469

MAKIGQPPNKGTATAAGPDMNPPPYSEGEPKLKKYGPGVDGALGTTDHNGSIDNVISTQGGGWFG

Ga0063037_119214

Ga0063037_1192142

F086145

MRRIVCKGYAGCWEGIFYTQAASRGYLKLLAFFLIWQKKTTVSLKIPIIVRV*

Ga0063037_120218

Ga0063037_1202181

F049215

VRWLLIACVAYLVSCTEPMKYVTRELTIWNKYVSNGYDNYDDEIEVNLKLGSQDWFWLYDSGDRVKIYNNSSFNWQFEFPEDFDSLYVHARFYYTKDLIIELVVADTAIRMDSDKTLMFWNCGDTTVVEYPFPACLTAVDSL*

Ga0063037_124217

Ga0063037_1242172

F054945

MKWVILIYLTMWTSTPDVKKYTRLEFPANDFHECIDIASQINDITNKGHNSDVPYVRSFYWVYINMLDEIKAECVFAKPSAPAPRWLNKKQTHNER*

Ga0063037_127243

Ga0063037_1272434

F041248

MKQHGKRARQERAIERTEASILVYQEKLKSCKDDNEKKLLKKKIERAQTTI

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

3300003979: Diffuse hydrothermal vent microbial communities from Menez Gwen hydrothermal field, Mid Atlantic ridge - MGW_B

Overview

Ecosystem and Geography

Associated Families

Associated Scaffolds

Sequences