Sample 3300003978

Basic Information
IMG/M Taxon OID	3300003978 Open in IMG/M
GOLD Reference (Study \| Sequencing Project \| Analysis Project)	Gs0113900 \| Gp0109517 \| Ga0063038
Sample Name	Diffuse hydrothermal vent microbial communities from Menez Gwen hydrothermal field, Mid Atlantic ridge - MGW_C
Sequencing Status	Permanent Draft
Sequencing Center	Max Planck Institute for Plant Breeding Research
Published?	N
Use Policy	Open

Basic Information

IMG/M Taxon OID

3300003978 Open in IMG/M

GOLD Reference
(Study | Sequencing Project | Analysis Project)

Gs0113900 | Gp0109517 | Ga0063038

Sample Name

Diffuse hydrothermal vent microbial communities from Menez Gwen hydrothermal field, Mid Atlantic ridge - MGW_C

Sequencing Status

Permanent Draft

Sequencing Center

Max Planck Institute for Plant Breeding Research

Published?

Use Policy

Open

Dataset Contents
Total Genome Size	80402791
Sequencing Scaffolds	27
Novel Protein Genes	35
Associated Families	34

Dataset Contents

Total Genome Size

80402791

Sequencing Scaffolds

Novel Protein Genes

Associated Families

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Archaea	1
All Organisms → cellular organisms → Archaea → Euryarchaeota	2
All Organisms → cellular organisms → Bacteria → Proteobacteria	1
All Organisms → cellular organisms → Bacteria	3
All Organisms → Viruses → Predicted Viral	5
Not Available	13
All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Thaumarchaeota incertae sedis → Marine Group I → Marine Group I thaumarchaeote	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Rhodospirillaceae → unclassified Rhodospirillaceae → Rhodospirillaceae bacterium	1

Dataset Phylogeny

Taxonomy Groups

Number of Scaffolds

All Organisms → cellular organisms → Archaea

All Organisms → cellular organisms → Archaea → Euryarchaeota

All Organisms → cellular organisms → Bacteria → Proteobacteria

All Organisms → cellular organisms → Bacteria

All Organisms → Viruses → Predicted Viral

Not Available

All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Thaumarchaeota incertae sedis → Marine Group I → Marine Group I thaumarchaeote

All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Rhodospirillaceae → unclassified Rhodospirillaceae → Rhodospirillaceae bacterium

Ecosystem Assignment (GOLD)
Name	Diffuse Hydrothermal Vent Microbial Communities From Menez Gwen Hydrothermal Field, Mid Atlantic Ridge
Type	Environmental
Taxonomy	Environmental → Aquatic → Marine → Hydrothermal Vents → Diffuse Flow → Diffuse Hydrothermal Vent → Diffuse Hydrothermal Vent Microbial Communities From Menez Gwen Hydrothermal Field, Mid Atlantic Ridge

Ecosystem Assignment (GOLD)

Name

Diffuse Hydrothermal Vent Microbial Communities From Menez Gwen Hydrothermal Field, Mid Atlantic Ridge

Type

Environmental

Taxonomy

Environmental → Aquatic → Marine → Hydrothermal Vents → Diffuse Flow → Diffuse Hydrothermal Vent → Diffuse Hydrothermal Vent Microbial Communities From Menez Gwen Hydrothermal Field, Mid Atlantic Ridge

Alternative Ecosystem Assignments
Environment Ontology (ENVO)	marine hydrothermal vent biome → marine hydrothermal vent → hydrothermal fluid
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Subsurface (non-saline)

Alternative Ecosystem Assignments

Environment Ontology (ENVO)

marine hydrothermal vent biome → marine hydrothermal vent → hydrothermal fluid

Earth Microbiome Project Ontology (EMPO)

Free-living → Non-saline → Subsurface (non-saline)

Location Information
Location	Mid-Atlantic Ridge
Coordinates	Lat. (^o)	N/A	Long. (^o)	N/A	Alt. (m)	N/A	Depth (m)	N/A
Location on Map

Zoom:	Powered by OpenStreetMap^©

Location Information

Location

Mid-Atlantic Ridge

Coordinates

Lat. (^o)

N/A

Long. (^o)

N/A

Alt. (m)

N/A

Depth (m)

N/A

Location on Map

Zoom:

Family	Category	Number of Sequences	3D Structure?
F002348	Metagenome / Metatranscriptome	568	Y
F005400	Metagenome / Metatranscriptome	402	Y
F005684	Metagenome / Metatranscriptome	393	Y
F006469	Metagenome / Metatranscriptome	372	Y
F009424	Metagenome / Metatranscriptome	318	Y
F010693	Metagenome	300	Y
F011446	Metagenome / Metatranscriptome	291	Y
F015260	Metagenome / Metatranscriptome	256	Y
F015611	Metagenome / Metatranscriptome	253	Y
F020717	Metagenome / Metatranscriptome	222	Y
F020787	Metagenome / Metatranscriptome	222	N
F029236	Metagenome / Metatranscriptome	189	Y
F036737	Metagenome / Metatranscriptome	169	Y
F037771	Metagenome / Metatranscriptome	167	N
F041248	Metagenome / Metatranscriptome	160	Y
F041257	Metagenome / Metatranscriptome	160	N
F047906	Metagenome / Metatranscriptome	149	N
F054945	Metagenome / Metatranscriptome	139	N
F060978	Metagenome	132	Y
F062152	Metagenome / Metatranscriptome	131	Y
F062154	Metagenome / Metatranscriptome	131	N
F064797	Metagenome	128	Y
F076483	Metagenome	118	Y
F079215	Metagenome	116	Y
F080150	Metagenome	115	Y
F080654	Metagenome / Metatranscriptome	115	N
F087321	Metagenome	110	N
F092696	Metagenome	107	N
F097500	Metagenome / Metatranscriptome	104	N
F097507	Metagenome	104	N
F098016	Metagenome / Metatranscriptome	104	N
F099429	Metagenome / Metatranscriptome	103	Y
F099435	Metagenome	103	N
F103411	Metagenome	101	Y

Family

Scaffold	Taxonomy	Length	IMG/M Link
Ga0063038_100189	All Organisms → cellular organisms → Archaea	24383	Open in IMG/M
Ga0063038_101984	All Organisms → cellular organisms → Archaea → Euryarchaeota	6879	Open in IMG/M
Ga0063038_102277	All Organisms → cellular organisms → Bacteria → Proteobacteria	6385	Open in IMG/M
Ga0063038_103069	All Organisms → cellular organisms → Bacteria	5248	Open in IMG/M
Ga0063038_103570	All Organisms → Viruses → Predicted Viral	4719	Open in IMG/M
Ga0063038_103969	All Organisms → cellular organisms → Archaea → Euryarchaeota	4375	Open in IMG/M
Ga0063038_104235	All Organisms → cellular organisms → Bacteria	4171	Open in IMG/M
Ga0063038_104779	Not Available	3799	Open in IMG/M
Ga0063038_104995	All Organisms → Viruses → Predicted Viral	3665	Open in IMG/M
Ga0063038_106030	Not Available	3164	Open in IMG/M
Ga0063038_106602	All Organisms → cellular organisms → Bacteria	2927	Open in IMG/M
Ga0063038_110081	All Organisms → Viruses → Predicted Viral	2050	Open in IMG/M
Ga0063038_110191	Not Available	2033	Open in IMG/M
Ga0063038_110781	Not Available	1936	Open in IMG/M
Ga0063038_113474	Not Available	1600	Open in IMG/M
Ga0063038_113573	Not Available	1589	Open in IMG/M
Ga0063038_115408	All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Thaumarchaeota incertae sedis → Marine Group I → Marine Group I thaumarchaeote	1424	Open in IMG/M
Ga0063038_116198	Not Available	1360	Open in IMG/M
Ga0063038_117839	All Organisms → Viruses → Predicted Viral	1251	Open in IMG/M
Ga0063038_120323	Not Available	1113	Open in IMG/M
Ga0063038_120615	All Organisms → Viruses → Predicted Viral	1100	Open in IMG/M
Ga0063038_120902	Not Available	1087	Open in IMG/M
Ga0063038_122734	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Rhodospirillaceae → unclassified Rhodospirillaceae → Rhodospirillaceae bacterium	1006	Open in IMG/M
Ga0063038_123575	Not Available	971	Open in IMG/M
Ga0063038_123889	Not Available	959	Open in IMG/M
Ga0063038_125953	Not Available	881	Open in IMG/M
Ga0063038_129439	Not Available	759	Open in IMG/M

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0063038_100189	Ga0063038_10018924	F080654	VAEVISEESEPVDKTDLEERQDLWNKIQKFDPEASAMDYYDNGEWDLEKMRSDLKVLLEKERFGR*
Ga0063038_101984	Ga0063038_1019845	F097507	MKYCVVVAEKMHKKEKLGVMNWSDEWDKPCLIEQVQMRIDTGWIPIGGVSYGEHEAFSEKVWAQSMSKEEDSEEE*
Ga0063038_102277	Ga0063038_1022771	F098016	LSQRPLSPSGLPDEASADERLAQVSDDLPEPRLVLPLDDEEPDAPVLEDNAPVSLNGLSQHPADLGQHAAPSIELLLTRPDPAAAGSTVAQPILPGSQPVSPVPGWMSVADLHEPEDQLFLPEMPIGLPAELAEPVAAVFTNGASDAPLAEVPLPEPTSVSEIELVDADLDSWMASLESPSMFLDVPPVQVAMNDTVVRNVWVDDRRSTVDDT
Ga0063038_103069	Ga0063038_1030692	F087321	MKHEDVFRIAVEHFPLCHVGEDSEGEVIIFTGLISDENQELREMTHEDIA*
Ga0063038_103069	Ga0063038_1030693	F064797	MKTLRKGDEFKRLKNSTKADWGVIKKLVEDGWTFCDKTTWRKLRGKDK*
Ga0063038_103570	Ga0063038_1035701	F099429	MNKLLLLLIPFLLGNSAGGLGGLVILAGGAIIGLGVIIGIVWGLIRWLT*
Ga0063038_103570	Ga0063038_1035703	F080150	MAEIKPIGFKPDGSHIHKGSLLLVVGVLIGLYCIFSDTPFAWLFSV*
Ga0063038_103969	Ga0063038_1039693	F005684	VYDTEESPLSTMQVVRRKSGVREGRLCNRNEPRQAHYEPERGRFPDRGWNEHPRRSKSKQVRMASTGPGRMHS*
Ga0063038_104235	Ga0063038_1042353	F062154	MQSRRNAVGVNRVKVLSVVNARPERLVNSVANGVRAPSVVNARPERLVNSVANGVRAPSVVNARPERLVNRAVNGVRVPSVVNVRPDLVVSVVRVDHSSVAAVVREAQVVFCGCSL*
Ga0063038_104779	Ga0063038_1047792	F020717	MTRKQSEIFDISIVVCTRFLTLLETTQCLDFLRPHHILHENKDIRCFRDLNEQKDISISALKLMLSEN*
Ga0063038_104995	Ga0063038_1049958	F054945	MKWVILIYLTMWTSTPDVKKYTRLEFPANDFHECIDIASQINDITNKGHNSDVPYVRSFYWVYINMLDEITAECVFAKPSAPAPRWLKKKQTHNER*
Ga0063038_105643	Ga0063038_1056436	F020787	MPKVRFEIYSTERGKKLIDLGELLVESGYLQSFDLDEEGTEVIFNFEVNAGFDVEKSEINMEELRSYFDAADDVGKKFTDELLRSVFDLDDTGHIWKS*
Ga0063038_106030	Ga0063038_1060303	F037771	MRTSGPDLVVFDGYRGRHDGDRTAAAGLKALLGCEDSTYWNNCSDRGDSLKRRFDRASEWLELRLGNITDVNVIGLSMGCQLAVRFVHHASIKAPSIKFGQLLLIAPDPKYRPVGRDAEEIKAGTSSAFEEAVALWGGRGLAGPRFISGLADAANRMERTRIVYCRSDEVAEWSANVELMVDELPVTTGIELIEAIDGEVVSTDDMTVDLGVGDPELDVHDRLWESISFV*
Ga0063038_106602	Ga0063038_1066022	F041257	MQEFKPNYRPLGSEEDDVVDPRSEQPDGPFDHERFKTLTVLAHAAGQVMDRYAIKGFEGFTNRQANWACKLQSFFNLSNPFETLVLLLFTFQFSRNERFDLEMGKTEPIDRSHPLSKALMAWVWWDPSSEASRVDRFYPWQYGKERTSRMVAIASGLLPEPIDVTSSGDIPPSPPRTQ*
Ga0063038_106910	Ga0063038_1069103	F103411	MPRELLKFREGDCGLKIRKDGQLEVAGVDEAGGMIDEKGMVNPVLLFAAAWARRDQNVFQVLLDNFKESVREGFFGPDAKRDYEKADKVKKEHEASLKAQEPPVPFLNPDKIEEPVLDPASKPRVIDHDPIGNEFETHSDVASGAVTLTDGGCGNADSASGAVTFEQPEPLDIKGHLDRRDS*
Ga0063038_110081	Ga0063038_1100812	F029236	MDNSDFMNDAMKMIEEWLASSKAWLELESARLKLEAETRLWEAENDVFSPEAGCYDWEFIDEWV*
Ga0063038_110191	Ga0063038_1101913	F047906	VALAAKFTQKRTVTKERMPDAIRVPVAHRPVVGLEVLAVRWHHAVTKVRAALRLNMFVVAKRVSRVEIKFAVTAKAGLVQTQRLGVANAVANAVVIRIVVAERVA*
Ga0063038_110781	Ga0063038_1107814	F015260	MKWTKEQLIEGSLSLVRMRSRLAMIEKKVKDKGIRMTYSERMDFRKKYSPLKKKIDDMDNEFLLNVAGNGVEGEPDDSEPPPQNKEKQILKDTV*
Ga0063038_113474	Ga0063038_1134744	F011446	MENVIFAWASSQSWWGLATTIIVVANGITMTLRDRYAEGIPILGKIWPILNWLSLNIANNKNDEK*
Ga0063038_113573	Ga0063038_1135733	F041248	MKQHGKRARQESAIERTEASILVYQEKLKSCKDDNEKKLLKKKIERAQTTIKNTKII*
Ga0063038_113573	Ga0063038_1135734	F005400	MPVLRYDSGVADLTHTNMCYRCDYCGQGYNRIIWLNQIATEHFICDNCSTYYKLTRKDLRELQYVKTREEWRLADCWPCNGFFPYPLGFPREDE*
Ga0063038_115408	Ga0063038_1154081	F002348	YGGWIVSGLSVLAGAAFIWPHFHVALLGFVLIYMGVRIFNFSTFKEYEEKRMKILESLRKW*
Ga0063038_116198	Ga0063038_1161982	F036737	MSVILVTVGLVFGAYLYQPMWFDHGPYTYVSSHESLADCQRAKTSGTDEVFMQETLCANGELYMKKDSVSKTEKSDSTDTTMNPHWSE*
Ga0063038_117366	Ga0063038_1173663	F020787	MPKVRFEIYSTERGKKLIDLGELLVESGYLQSFNLDEEGTEVIFNFEVNAGFDVEKGEINMEELRSYFDAADDVGKKFTDELL
Ga0063038_117839	Ga0063038_1178392	F006469	MAHIGQPPSKGTATAIGPDMNPPPYAEGEPKLKKYGAGTDGALGHTLHNGTVDNAIDAQVRKVGKVYGW*
Ga0063038_120323	Ga0063038_1203232	F010693	MIAILVFSFVVLSTICLWLLIEQRKSWKFLIWFIPILLVLVSSTYVTYTSILGYPKVSLPQKGMYLKHHIDEPNWIYLWVLGKNNIPMSYQIVYSKGTHNALEGVKGKQEEGAFMVLGSDEEGAGEGEEGKAEK
Ga0063038_120615	Ga0063038_1206153	F060978	MKRKTKKMDRGMIEFGADCITITIEDEPWKVGRIHRANKAGAGKHADRRTKRNRTRAAQNRTAIGESM*
Ga0063038_120615	Ga0063038_1206154	F079215	MQNLHAAIVSMPSDKDARPFGHVQLLTIEYGGYSWSVQVPLGEFAQAHQKMSRVADTDGVE*
Ga0063038_120902	Ga0063038_1209021	F097500	MNRLEAVIEKEKGISYSQRDKDLFSSHILILIHQEQESKKFKRKLCLALFLGVGSLSLLFSRISEIANDFTVGLSDAITGDVLTIANDFTVGLSDAITGDMLTTVVFSYGLLFALLPLLKKPDFIFN*
Ga0063038_122734	Ga0063038_1227343	F009424	MAKDTASGKIPANGLSEKEDVAKESTKSLALDSHGPNQMPMGVVHKKISTDRGSFEFS*
Ga0063038_123575	Ga0063038_1235751	F015611	METTYTEFMEAKVKSWKDMKDRNVLKAAEKFKKKMKSGNVLGYTMAHSEFTIFRNEKEWKDSV
Ga0063038_123889	Ga0063038_1238891	F099435	MMIKDNSLKEIKNCEPKRQDALMYVVKNCSEYIVTPEGNEHWLCGSVIVTHWAHDTGYSRKYMGLAFPDNFESWSFHNDELAGEAFETHHEMENI*
Ga0063038_123889	Ga0063038_1238893	F076483	MQMISKNKLGQIFRTATFVDRITKIRTLQTLLNDTTLDIPLMRREVNQINMSWILRNILVNNDQHINISR
Ga0063038_125953	Ga0063038_1259532	F062152	MGPHYTNELINHINKLNEETRARGAVGFLTNDPDHWAGYGVFNIGQFQDYLEREYQHNMRKEERRNQ*
Ga0063038_129439	Ga0063038_1294393	F092696	EPLEHKFQLSFDNAKNCTEFKKVVDVGVSFFRLANGGEINYSGSCKKVVNSKNVNRSVL*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

3300003978: Diffuse hydrothermal vent microbial communities from Menez Gwen hydrothermal field, Mid Atlantic ridge - MGW_C

Overview

Ecosystem and Geography

Associated Families

Associated Scaffolds

Sequences