Metagenome Family F080150

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F080150
Family Type	Metagenome
Number of Sequences	115
Average Sequence Length	53 residues
Representative Sequence	MAEIKPIGFKPDGSHINKGALLLVVGVLIGLYCIFADAPFSWLFGSTVIEVVK
Number of Associated Samples	48
Number of Associated Scaffolds	115

Quality Assessment
Transcriptomic Evidence	No
Most common taxonomic group	Unclassified
% of genes with valid RBS motifs	87.83 %
% of genes near scaffold ends (potentially truncated)	20.87 %
% of genes from short scaffolds (< 2000 bps)	88.70 %
Associated GOLD sequencing projects	47
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.44

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Unclassified (66.957 % of family members)
NCBI Taxonomy ID	N/A
Taxonomy	N/A

Most Common Ecosystem
GOLD Ecosystem	Environmental → Aquatic → Marine → Intertidal Zone → Unclassified → Seawater (26.087 % of family members)
Environment Ontology (ENVO)	Unclassified (95.652 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Saline → Water (saline) (56.522 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Transmembrane (alpha-helical)	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 37.04% β-sheet: 0.00% Coil/Unstructured: 62.96%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.44
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.44
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 115 Family Scaffolds
PF08291	Peptidase_M15_3	2.61
PF05488	PAAR_motif	2.61
PF06714	Gp5_OB	0.87

COG ID	Name	Functional Category	% Frequency in 115 Family Scaffolds
COG4104	Zn-binding Pro-Ala-Ala-Arg (PAAR) domain, involved in Type VI secretion	Intracellular trafficking, secretion, and vesicular transport [U]	2.61

Phylogeny

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	66.96 %
All Organisms	root	All Organisms	33.04 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	66.96 %
Viruses	superkingdom	All Organisms → Viruses	33.04 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	66.96 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	33.04 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300001524\|Abe_1005061	All Organisms → Viruses → Predicted Viral	1703	Open in IMG/M
3300001680\|KiloMoana_10037717	All Organisms → Viruses → Predicted Viral	2123	Open in IMG/M
3300001681\|Abe_10142774	All Organisms → Viruses → Predicted Viral	1887	Open in IMG/M
3300003540\|FS896DNA_10675762	Not Available	569	Open in IMG/M
3300003978\|Ga0063038_103570	All Organisms → Viruses → Predicted Viral	4719	Open in IMG/M
3300003981\|Ga0063042_125064	All Organisms → Viruses → Predicted Viral	1130	Open in IMG/M
3300006310\|Ga0068471_1244456	Not Available	924	Open in IMG/M
3300006310\|Ga0068471_1332270	All Organisms → Viruses → Predicted Viral	1583	Open in IMG/M
3300006310\|Ga0068471_1342361	All Organisms → Viruses → Predicted Viral	1499	Open in IMG/M
3300006326\|Ga0068477_1332616	Not Available	584	Open in IMG/M
3300006338\|Ga0068482_1283474	Not Available	908	Open in IMG/M
3300006338\|Ga0068482_1715238	Not Available	559	Open in IMG/M
3300006338\|Ga0068482_1821622	Not Available	901	Open in IMG/M
3300006338\|Ga0068482_1856024	Not Available	751	Open in IMG/M
3300006339\|Ga0068481_1055892	Not Available	827	Open in IMG/M
3300006339\|Ga0068481_1240019	Not Available	724	Open in IMG/M
3300006339\|Ga0068481_1272241	Not Available	788	Open in IMG/M
3300006340\|Ga0068503_10263054	Not Available	766	Open in IMG/M
3300006340\|Ga0068503_10278412	All Organisms → Viruses → Predicted Viral	1372	Open in IMG/M
3300006340\|Ga0068503_10296299	Not Available	669	Open in IMG/M
3300006340\|Ga0068503_10336532	Not Available	807	Open in IMG/M
3300006340\|Ga0068503_10420820	Not Available	705	Open in IMG/M
3300006340\|Ga0068503_10656092	Not Available	636	Open in IMG/M
3300006902\|Ga0066372_10401342	Not Available	792	Open in IMG/M
3300006902\|Ga0066372_10571186	Not Available	671	Open in IMG/M
3300007291\|Ga0066367_1205300	Not Available	756	Open in IMG/M
3300007756\|Ga0105664_1088617	All Organisms → Viruses → Predicted Viral	1950	Open in IMG/M
3300007756\|Ga0105664_1188123	Not Available	614	Open in IMG/M
3300009173\|Ga0114996_10347940	All Organisms → Viruses → Predicted Viral	1148	Open in IMG/M
3300017775\|Ga0181432_1074559	Not Available	984	Open in IMG/M
3300017775\|Ga0181432_1146815	Not Available	723	Open in IMG/M
3300017775\|Ga0181432_1216931	Not Available	601	Open in IMG/M
3300017775\|Ga0181432_1263360	Not Available	545	Open in IMG/M
3300017775\|Ga0181432_1305690	Not Available	505	Open in IMG/M
3300020263\|Ga0211679_1088947	Not Available	510	Open in IMG/M
3300020383\|Ga0211646_10058358	All Organisms → Viruses → Predicted Viral	1456	Open in IMG/M
3300020383\|Ga0211646_10310306	Not Available	557	Open in IMG/M
3300020389\|Ga0211680_10012598	All Organisms → Viruses → Predicted Viral	4609	Open in IMG/M
3300020389\|Ga0211680_10134766	Not Available	994	Open in IMG/M
3300020407\|Ga0211575_10388308	Not Available	578	Open in IMG/M
3300020412\|Ga0211552_10124429	Not Available	891	Open in IMG/M
3300020426\|Ga0211536_10175659	Not Available	834	Open in IMG/M
3300020426\|Ga0211536_10289325	Not Available	638	Open in IMG/M
3300020427\|Ga0211603_10010572	Not Available	3662	Open in IMG/M
3300020434\|Ga0211670_10297178	Not Available	668	Open in IMG/M
3300020449\|Ga0211642_10420527	Not Available	575	Open in IMG/M
3300020458\|Ga0211697_10244990	Not Available	741	Open in IMG/M
3300020458\|Ga0211697_10429613	Not Available	550	Open in IMG/M
3300021089\|Ga0206679_10430907	Not Available	697	Open in IMG/M
3300021442\|Ga0206685_10017040	Not Available	2284	Open in IMG/M
3300021442\|Ga0206685_10018732	All Organisms → Viruses → Predicted Viral	2183	Open in IMG/M
3300021442\|Ga0206685_10045964	All Organisms → Viruses → Predicted Viral	1413	Open in IMG/M
3300021442\|Ga0206685_10221672	Not Available	638	Open in IMG/M
3300021443\|Ga0206681_10040163	All Organisms → Viruses → Predicted Viral	1815	Open in IMG/M
3300021443\|Ga0206681_10117203	Not Available	1041	Open in IMG/M
3300021443\|Ga0206681_10117567	All Organisms → Viruses → Predicted Viral	1039	Open in IMG/M
3300021443\|Ga0206681_10371569	Not Available	552	Open in IMG/M
3300027622\|Ga0209753_1068812	Not Available	919	Open in IMG/M
3300027630\|Ga0209432_1067886	All Organisms → Viruses → Predicted Viral	1040	Open in IMG/M
3300027838\|Ga0209089_10177990	All Organisms → Viruses → Predicted Viral	1266	Open in IMG/M
3300028190\|Ga0257108_1036549	All Organisms → Viruses → Predicted Viral	1481	Open in IMG/M
3300028190\|Ga0257108_1088556	Not Available	920	Open in IMG/M
3300028190\|Ga0257108_1130975	Not Available	734	Open in IMG/M
3300028192\|Ga0257107_1047368	Not Available	1331	Open in IMG/M
3300028192\|Ga0257107_1065985	All Organisms → Viruses → Predicted Viral	1104	Open in IMG/M
3300028192\|Ga0257107_1072093	All Organisms → Viruses → Predicted Viral	1050	Open in IMG/M
3300028192\|Ga0257107_1212871	Not Available	547	Open in IMG/M
3300028489\|Ga0257112_10068447	Not Available	1306	Open in IMG/M
3300028489\|Ga0257112_10225915	Not Available	647	Open in IMG/M
3300028489\|Ga0257112_10293990	Not Available	546	Open in IMG/M
3300028535\|Ga0257111_1060520	All Organisms → Viruses → Predicted Viral	1236	Open in IMG/M
3300031606\|Ga0302119_10015423	All Organisms → Viruses → Predicted Viral	3249	Open in IMG/M
3300031757\|Ga0315328_10197845	Not Available	1175	Open in IMG/M
3300031801\|Ga0310121_10055870	All Organisms → Viruses → Predicted Viral	2640	Open in IMG/M
3300031801\|Ga0310121_10192174	All Organisms → Viruses → Predicted Viral	1247	Open in IMG/M
3300031801\|Ga0310121_10346416	Not Available	858	Open in IMG/M
3300031804\|Ga0310124_10428012	Not Available	783	Open in IMG/M
3300031861\|Ga0315319_10320239	Not Available	781	Open in IMG/M
3300031861\|Ga0315319_10364615	Not Available	726	Open in IMG/M
3300031886\|Ga0315318_10098027	All Organisms → Viruses → Predicted Viral	1622	Open in IMG/M
3300031886\|Ga0315318_10186236	All Organisms → Viruses → Predicted Viral	1181	Open in IMG/M
3300031886\|Ga0315318_10613269	Not Available	616	Open in IMG/M
3300032048\|Ga0315329_10016913	Not Available	3292	Open in IMG/M
3300032048\|Ga0315329_10083404	Not Available	1600	Open in IMG/M
3300032048\|Ga0315329_10111616	All Organisms → Viruses → Predicted Viral	1396	Open in IMG/M
3300032048\|Ga0315329_10145316	All Organisms → Viruses → Predicted Viral	1229	Open in IMG/M
3300032048\|Ga0315329_10217133	All Organisms → Viruses → Predicted Viral	1007	Open in IMG/M
3300032048\|Ga0315329_10457484	Not Available	680	Open in IMG/M
3300032130\|Ga0315333_10258139	Not Available	826	Open in IMG/M
3300032278\|Ga0310345_10084794	Not Available	2745	Open in IMG/M
3300032278\|Ga0310345_10104067	All Organisms → Viruses → Predicted Viral	2487	Open in IMG/M
3300032278\|Ga0310345_10242341	All Organisms → Viruses → Predicted Viral	1650	Open in IMG/M
3300032278\|Ga0310345_10309702	All Organisms → Viruses → Predicted Viral	1466	Open in IMG/M
3300032278\|Ga0310345_10357481	All Organisms → Viruses → Predicted Viral	1368	Open in IMG/M
3300032278\|Ga0310345_10610310	All Organisms → Viruses → Predicted Viral	1051	Open in IMG/M
3300032278\|Ga0310345_10949982	Not Available	839	Open in IMG/M
3300032278\|Ga0310345_10982445	Not Available	825	Open in IMG/M
3300032278\|Ga0310345_11153227	Not Available	758	Open in IMG/M
3300032278\|Ga0310345_11357614	Not Available	695	Open in IMG/M
3300032278\|Ga0310345_11527025	Not Available	653	Open in IMG/M
3300032360\|Ga0315334_10040789	Not Available	3317	Open in IMG/M
3300032360\|Ga0315334_10068461	All Organisms → Viruses → Predicted Viral	2633	Open in IMG/M
3300032360\|Ga0315334_10166212	All Organisms → Viruses → Predicted Viral	1765	Open in IMG/M
3300032360\|Ga0315334_10675565	Not Available	893	Open in IMG/M
3300032360\|Ga0315334_10735203	Not Available	854	Open in IMG/M
3300032360\|Ga0315334_11091520	Not Available	690	Open in IMG/M
3300032360\|Ga0315334_11442274	Not Available	591	Open in IMG/M
3300032360\|Ga0315334_11490325	Not Available	580	Open in IMG/M
3300032820\|Ga0310342_100913480	All Organisms → Viruses → Predicted Viral	1024	Open in IMG/M
3300032820\|Ga0310342_101412788	Not Available	827	Open in IMG/M
3300032820\|Ga0310342_102204569	Not Available	659	Open in IMG/M
3300032820\|Ga0310342_102482757	Not Available	620	Open in IMG/M
3300032820\|Ga0310342_103559435	Not Available	514	Open in IMG/M
3300034695\|Ga0372840_149313	Not Available	698	Open in IMG/M
3300034695\|Ga0372840_259375	Not Available	513	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	100.00%

Habitat	Taxonomy	Distribution
Aquatic	Environmental → Aquatic	100.00%

Habitat	Taxonomy	Distribution
Marine	Environmental → Aquatic → Marine	100.00%

Habitat	Taxonomy	Distribution
Oceanic	Environmental → Aquatic → Marine → Oceanic	52.17%
Intertidal Zone	Environmental → Aquatic → Marine → Intertidal Zone	26.09%
Unclassified	Environmental → Aquatic → Marine → Unclassified	12.17%
Hydrothermal Vents	Environmental → Aquatic → Marine → Hydrothermal Vents	5.22%
Strait	Environmental → Aquatic → Marine → Strait	4.35%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Aquatic → Marine → Oceanic → Unclassified	35.65%
Unclassified	Environmental → Aquatic → Marine → Intertidal Zone → Unclassified	26.09%
Aphotic Zone	Environmental → Aquatic → Marine → Oceanic → Aphotic Zone	13.91%
Unclassified	Environmental → Aquatic → Marine → Unclassified → Unclassified	12.17%
Unclassified	Environmental → Aquatic → Marine → Strait → Unclassified	4.35%
Photic Zone	Environmental → Aquatic → Marine → Oceanic → Photic Zone	2.61%
Diffuse Flow	Environmental → Aquatic → Marine → Hydrothermal Vents → Diffuse Flow	2.61%
Black Smokers	Environmental → Aquatic → Marine → Hydrothermal Vents → Black Smokers	2.61%

Habitat	Taxonomy	Distribution
Seawater	Environmental → Aquatic → Marine → Intertidal Zone → Unclassified → Seawater	26.09%
Seawater	Environmental → Aquatic → Marine → Oceanic → Unclassified → Seawater	15.65%
Marine	Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine	13.04%
Marine	Environmental → Aquatic → Marine → Oceanic → Aphotic Zone → Marine	12.17%
Marine	Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine	12.17%
Marine	Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine	6.96%
Seawater	Environmental → Aquatic → Marine → Strait → Unclassified → Seawater	4.35%
Marine	Environmental → Aquatic → Marine → Oceanic → Photic Zone → Marine	2.61%
Black Smokers Hydrothermal Plume	Environmental → Aquatic → Marine → Hydrothermal Vents → Black Smokers → Black Smokers Hydrothermal Plume	2.61%
Background Seawater	Environmental → Aquatic → Marine → Oceanic → Aphotic Zone → Background Seawater	1.74%
Diffuse Hydrothermal Vent	Environmental → Aquatic → Marine → Hydrothermal Vents → Diffuse Flow → Diffuse Hydrothermal Vent	0.87%
Diffuse Hydrothermal Flow Volcanic Vent	Environmental → Aquatic → Marine → Hydrothermal Vents → Diffuse Flow → Diffuse Hydrothermal Flow Volcanic Vent	0.87%
Diffuse Hydrothermal Vent	Environmental → Aquatic → Marine → Hydrothermal Vents → Diffuse Flow → Diffuse Hydrothermal Vent	0.87%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300001524	Abe Hydrothermal Plume	Environmental	Open in IMG/M
3300001680	Black smokers hydrothermal plume microbial communities from Kilo Moana, Pacific Ocean	Environmental	Open in IMG/M
3300001681	Black smokers hydrothermal plume microbial communities from Abe, Lau Basin, Pacific Ocean - IDBA	Environmental	Open in IMG/M
3300003540	Diffuse hydrothermal flow volcanic vent microbial communities from Axial Seamount, northeast Pacific ocean - Sample FS896_ElGuapo_DNA	Environmental	Open in IMG/M
3300003978	Diffuse hydrothermal vent microbial communities from Menez Gwen hydrothermal field, Mid Atlantic ridge - MGW_C	Environmental	Open in IMG/M
3300003981	Diffuse hydrothermal vent microbial communities from Menez Gwen hydrothermal field, Mid Atlantic ridge - MGW_A	Environmental	Open in IMG/M
3300006310	Marine microbial communities from North Pacific Subtropical Gyre, Station ALOHA - HOT229_3_0500m	Environmental	Open in IMG/M
3300006326	Marine microbial communities from North Pacific Subtropical Gyre, Station ALOHA - HOT231_1_0770m	Environmental	Open in IMG/M
3300006338	Marine microbial communities from North Pacific Subtropical Gyre, Station ALOHA - HOT232_1_0770m	Environmental	Open in IMG/M
3300006339	Marine microbial communities from North Pacific Subtropical Gyre, Station ALOHA - HOT232_3_0500m	Environmental	Open in IMG/M
3300006340	Marine microbial communities from North Pacific Subtropical Gyre, Station ALOHA - HOT238_2_0770m	Environmental	Open in IMG/M
3300006902	Seawater microbial communities from Saanich Inlet, British Columbia, Canada - Knorr_S15_td_250_ad_251m_LV_A	Environmental	Open in IMG/M
3300007291	Seawater microbial communities from Saanich Inlet, British Columbia, Canada - Knorr_S7_td_AAIW_ad_750m_LV_A	Environmental	Open in IMG/M
3300007756	Diffuse hydrothermal flow volcanic vent microbial communities from Axial Seamount, northeast Pacific ocean - Sample CTDBack_2015_DNA CLC_assembly	Environmental	Open in IMG/M
3300009173	Marine microbial communities from western Arctic Ocean - ArcticOcean_MG_CB4_134	Environmental	Open in IMG/M
3300017775	Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 55 SPOT_SRF_2014-07-17	Environmental	Open in IMG/M
3300020263	Marine microbial communities from Tara Oceans - TARA_B100000809 (ERX555942-ERR599125)	Environmental	Open in IMG/M
3300020383	Marine microbial communities from Tara Oceans - TARA_B100000929 (ERX556043-ERR598971)	Environmental	Open in IMG/M
3300020389	Marine microbial communities from Tara Oceans - TARA_B100000809 (ERX556139-ERR599008)	Environmental	Open in IMG/M
3300020407	Marine microbial communities from Tara Oceans - TARA_B100001105 (ERX556033-ERR599115)	Environmental	Open in IMG/M
3300020412	Marine microbial communities from Tara Oceans - TARA_B100001167 (ERX556053-ERR599047)	Environmental	Open in IMG/M
3300020426	Marine microbial communities from Tara Oceans - TARA_B100000378 (ERX555992-ERR599112)	Environmental	Open in IMG/M
3300020427	Marine microbial communities from Tara Oceans - TARA_B000000460 (ERX555922-ERR598960)	Environmental	Open in IMG/M
3300020434	Marine microbial communities from Tara Oceans - TARA_B100001013 (ERX555944-ERR599071)	Environmental	Open in IMG/M
3300020449	Marine microbial communities from Tara Oceans - TARA_B100001079 (ERX556008-ERR599020)	Environmental	Open in IMG/M
3300020458	Marine microbial communities from Tara Oceans - TARA_B100000749 (ERX556123-ERR599000)	Environmental	Open in IMG/M
3300021089	Ammonia-oxidizing marine archaeal communities from Monterey Bay, California, United States - M1 100m 12015	Environmental	Open in IMG/M
3300021442	Ammonia-oxidizing marine archaeal communities from Monterey Bay, California, United States - M2 200m 12015	Environmental	Open in IMG/M
3300021443	Ammonia-oxidizing marine archaeal communities from Monterey Bay, California, United States - M1 500m 12015	Environmental	Open in IMG/M
3300027622	Marine microbial communities from oxygen minimum zone in mesopelagic equatorial Pacific - METZYME_3_550m (SPAdes)	Environmental	Open in IMG/M
3300027630	Marine microbial communities from oxygen minimum zone in mesopelagic equatorial Pacific - METZYME_3_800m (SPAdes)	Environmental	Open in IMG/M
3300027838	Marine microbial communities from western Arctic Ocean - ArcticOcean_MG_CB2_150 (SPAdes)	Environmental	Open in IMG/M
3300028190	Marine microbial communities from Northeast Subartic Pacific Ocean, Canada - LP_J_2011_P26_1000m	Environmental	Open in IMG/M
3300028192	Marine microbial communities from Northeast Subartic Pacific Ocean, Canada - LP_J_2011_P26_500m	Environmental	Open in IMG/M
3300028489	Marine microbial communities from Northeast Subartic Pacific Ocean, Canada - LP_J_2015_P26_1000m	Environmental	Open in IMG/M
3300028535	Marine microbial communities from Northeast Subartic Pacific Ocean, Canada - LP_J_2015_P26_500m	Environmental	Open in IMG/M
3300031606	Marine microbial communities from Western Arctic Ocean, Canada - AG5_Tmax	Environmental	Open in IMG/M
3300031757	Ammonia-oxidizing marine archaeal communities from Monterey Bay, California, United States - M1 200m 32315	Environmental	Open in IMG/M
3300031801	Marine microbial communities from Western Arctic Ocean, Canada - CB27_Tmax_986	Environmental	Open in IMG/M
3300031804	Marine microbial communities from Western Arctic Ocean, Canada - CB11b_AW_Bot5	Environmental	Open in IMG/M
3300031861	Ammonia-oxidizing marine archaeal communities from Monterey Bay, California, United States - M1 500m 3416	Environmental	Open in IMG/M
3300031886	Ammonia-oxidizing marine archaeal communities from Monterey Bay, California, United States - M1 200m 3416	Environmental	Open in IMG/M
3300032048	Ammonia-oxidizing marine archaeal communities from Monterey Bay, California, United States - M1 500m 32315	Environmental	Open in IMG/M
3300032130	Ammonia-oxidizing marine archaeal communities from Monterey Bay, California, United States - M1 200m 34915	Environmental	Open in IMG/M
3300032278	Marine microbial communities from station ALOHA, North Pacific Subtropical Gyre - HC15-DNA-20-500_MG	Environmental	Open in IMG/M
3300032360	Ammonia-oxidizing marine archaeal communities from Monterey Bay, California, United States - M1 500m 34915	Environmental	Open in IMG/M
3300032820	Marine microbial communities from station ALOHA, North Pacific Subtropical Gyre - S1503-DNA-20-500_MG	Environmental	Open in IMG/M
3300034695	Seawater microbial communities from the Northeast subarctic Pacific Ocean - P26_June_2012_500m	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
Abe_10050615	3300001524	Black Smokers Hydrothermal Plume	MAELKPIGFKPDGSHISKGALFVIVMILIGAYCIFADNPFSWLFGRYGTVI*
KiloMoana_100377175	3300001680	Black Smokers Hydrothermal Plume	MAEIKPVGFKPDGSHINRGALFVIVAVLIGLYCIFADAPFSWLFGRYGTA*
Abe_101427744	3300001681	Black Smokers Hydrothermal Plume	MAEIKPIGFKPDGSHINRGALFVIVAVLIGLYCIFADAPFSWLFGRYGTA*
FS896DNA_106757622	3300003540	Diffuse Hydrothermal Flow Volcanic Vent	MAEPSIKPIGWKPDGSHINKGALVVIGLIFIGLYCIFADAPFAWLFGDVIIHDLKL*
Ga0063038_1035703	3300003978	Diffuse Hydrothermal Vent	MAEIKPIGFKPDGSHIHKGSLLLVVGVLIGLYCIFSDTPFAWLFSV*
Ga0063042_1250644	3300003981	Diffuse Hydrothermal Vent	MEYPSIKPIGFKPDGSHIHKGALLIVVAVLIGLYCIFADNAFSWLFSTGVK*
Ga0068471_12444563	3300006310	Marine	MALKPIGFRPDGSHIHKGSLLLVVAVLIGLYCIFADAPFAWLFGNSVVEVVK*
Ga0068471_13322702	3300006310	Marine	MAEIKPIGFKPDGSHINKGALLLVVGILIGLYCIFADAPFSWLFSTGVVEVVK*
Ga0068471_13423614	3300006310	Marine	MGRDGHIKPIGWKPDGSHINKGSLLLVVAVLVGLYCIFADAPFSWLFSTTPTVVEHTMNHVAK*
Ga0068477_13326161	3300006326	Marine	MELKPIGFNPDGSHINKCSLLVIVAVLIGLYCIFADAPFGWLFGN
Ga0068482_12834743	3300006338	Marine	MAEIKPIGFKPDGSHIHKGALLLVVGVLIGLYCIFADAPFAWLFGNTVIEVVK*
Ga0068482_17152381	3300006338	Marine	IGFNPDGSHINKCSLLIIVAVLVGLYCIFADTPFAWLFGNTVIEVVK*
Ga0068482_18216223	3300006338	Marine	MAEIKPIGFKPDGSHIHKGTLFVIVAVLIGLYCIFADAPFAWLFGKSVVEVVK*
Ga0068482_18560242	3300006338	Marine	MALKPIGFKPDGSHIHKGALLLVVAVLVGVYCIFADAPFSWLFGNTVIEVVK*
Ga0068481_10558922	3300006339	Marine	MAEIKPIGFKPDGSHIHKGTLFVIVAVLIGLYCIFADAPFAWLFGNSIVEVVK*
Ga0068481_12400191	3300006339	Marine	MGRDGQIKPIGWTPDGSHIHKGALLVVVGVLIGLYCIFADAPFAWLFGNTVIEVVK*
Ga0068481_12722413	3300006339	Marine	MAELKPIGWTPDGSHIHKGSLFVIVAVLIGLYCIFADAPFSWLFGNTVIEVVK*
Ga0068503_102630541	3300006340	Marine	MAELKPIGFKPDGSHINKGALVIIGLIFIGLYCIMADAPFSWLFGTAPTVIEVVK*
Ga0068503_102784121	3300006340	Marine	MAEEIKPIGWTPDGSHINKGALFVIALVLIGVYCIFADAPFSWLFG
Ga0068503_102962993	3300006340	Marine	MAELKPIGFKPDGSHINKCSLFVIALVLIGVYCIFADNPFSWLFGQYGTAIEVVK*
Ga0068503_103365323	3300006340	Marine	MAEEIKPIGWTPDGSHINKGALFVIVLVLLGVYCIFADNPFGWLFGTEIFPSIEPVK*
Ga0068503_104208202	3300006340	Marine	MALKPIGFKPDGSHIHKGSLLLVVGILIGLYCIFADAPFAWLFGNSIVEVVK*
Ga0068503_106560923	3300006340	Marine	MAELKPIGFKPDGSHINKCSLFVIALVLIGAYCIFADAPFSWLFG
Ga0066372_104013421	3300006902	Marine	MAEPSIKPIGWTPDGSHVNKGALALVICILIGLYCIFADNPFSWLFATNVVEPIKIHTMEIK*
Ga0066372_105711861	3300006902	Marine	MEYPSIKPIGWKPDGSHVNKGAIALVICILIGLYCIFADNPFSWLFTTNVIEPVKIHTMEIK*
Ga0066367_12053002	3300007291	Marine	MAEIKPIGFKPDGSHINKGALALVICICIGVYCIFADNAFSWLFGSHAHLMEIK*
Ga0105664_10886175	3300007756	Background Seawater	MAEIKPIGFKHDGSHINKCSLFVIALVLIGAYCIFADNPFSWLFGQYGTVIEVVK*
Ga0105664_11881232	3300007756	Background Seawater	MAEPSIKPIGWKPDGSHINKGVLFTIVVVLIGLYCIFTEAPFAWLFGNVIIHDLEL*
Ga0114996_103479404	3300009173	Marine	MALKPIGFKPDGSHIHKGALFIVVAVLIGLYCIFTENAFSWLFGSHAHLMEIK*
Ga0181432_10745592	3300017775	Seawater	MAESKIKPIGWTPDGSHINKGALAIIGLIFIGLYCIMADAPFAWLFGTAPTVIDTVAPVV
Ga0181432_11468153	3300017775	Seawater	MEYPSIKPIGFKPDGSHINKGAIALVICILIGVYCIFADNPFSWLFTTNVIEPVKINTIEIK
Ga0181432_12169312	3300017775	Seawater	MAGIKPIGFKPDGSHINKGAIALSICCIIGLYCIMSDAPFSWLFGSTDLHMSVVK
Ga0181432_12633602	3300017775	Seawater	MALKPIGFKPDGSHIHKGSLLLVVGILIGLYCIFADAPFAWLFGSTDLHLSVVK
Ga0181432_13056902	3300017775	Seawater	MAKIKPIGFKPDGSHIHKGSLLLVVGVLIGLYCIFADAPFAWLFGNTVIEVVK
Ga0211679_10889471	3300020263	Marine	MADIKPIGFKPDGSHIHKGALLIVVAVLIGLYCIFADAPFSWLFGTTIMEI
Ga0211646_100583585	3300020383	Marine	MAEPSIKPIGWTPDGSHVNKGALALVICILIGLYCIFADNPFSWLFATNVVEPIKIHTMEIK
Ga0211646_103103062	3300020383	Marine	MAEIKPIGFKPDGSHINKGALLVVVGVLIGLYCIFADAPFSWLFSTNAIEVVSPMGNMN
Ga0211680_100125982	3300020389	Marine	MAELKKQKPIGWKTDGSHINKGVLFTMVVVLIGLYCIFADAPFSWL
Ga0211680_101347662	3300020389	Marine	MADIKPIGFKPDGSHIHKGALLIVVAVLIGLYCIFADAPFSWLFTGGPQ
Ga0211575_103883081	3300020407	Marine	MGRDGQIKPIGWTPDGSHIHKGALLVVVGVLIGLYCIFADAPFSWLFSTGVVEVVK
Ga0211552_101244291	3300020412	Marine	MAEIKPIGFKPDGSHIHKGSLLLVVGVLIGLYCIFSDTPFAWLFSV
Ga0211536_101756594	3300020426	Marine	EIKPIGFKPDGSHIHKGTLFVIVAVLIGLYCIFADAPFAWLFGNSVVEVVK
Ga0211536_102893251	3300020426	Marine	MAEEIKPVGWKPDGSHINKGVLFTMVVVLIGLYCIFADAPFSWLFGDRIIHDL
Ga0211603_100105721	3300020427	Marine	KMAELKPIGFKPDGSHINKGALVIIGLIFIGLYCIMADAPFAWLFGTAPTVIEVVK
Ga0211670_102971783	3300020434	Marine	AELKPIGFKPDGSHINKGALFVIGLVFIGLYCIMADAPFAWLFGTAPTVIEVVK
Ga0211642_104205271	3300020449	Marine	MALKPIGFKPDGSHINKGALLVVVGVLIGLYCIFADAPFSWLFGNTVIEVVK
Ga0211697_102449903	3300020458	Marine	MVGIKPIGFKPDGSHIHKGALLIVVAVLIGLYCIFADAPFAWLFGGGIQ
Ga0211697_104296132	3300020458	Marine	MAELKKQKPIGWKTDGSHINKGVLFTMVVVLIGVYCIFADAPFSWL
Ga0206679_104309072	3300021089	Seawater	MAELKPIGFKPDGSHIHKGSLLLVVGVLIGLYCIFSDTPFAWLFSV
Ga0206685_100170405	3300021442	Seawater	MAEPSIKPIGFKPDGSHVNKGALALVICICLGLYCIFADNPFSWLFSTNVVEPVKIHTMEIK
Ga0206685_100187322	3300021442	Seawater	MAEIKPIGFKPDGSHVNKGALLVVVGVLIGLYCIFADAPFAWLFGTNAIEVVSPMGNMN
Ga0206685_100459642	3300021442	Seawater	MEYPSIKPIGFKPDGSHINKGAIALVICILIGVYCIFADNPFSWLFSTNVVEPVKIHTMEIK
Ga0206685_102216722	3300021442	Seawater	MALKPIGFKPDGSHINKGALLLVVGILIGLYCIFADAPFSWLFSTGVVEVVK
Ga0206681_100401631	3300021443	Seawater	MALKPIGFKPDGSHINKGALLLVVGVLIGLYCIFADAPFSWLFSSTVIEV
Ga0206681_101172033	3300021443	Seawater	MAKPSIKPIGFKPDGSHVNKGALALVICICIGLYCIFADNPFSWLFSTNVVEPVKIHTMEIK
Ga0206681_101175675	3300021443	Seawater	MEEPSIKPIGFKPDGSHMNKGAIALIICILIGVYCIFADNPFSWLFSTNIMETK
Ga0206681_103715691	3300021443	Seawater	MAEIKPIGFKPDGSHIHKGALLLVVGILIGLYCIFADAPFAWLFGNSVVEVVK
Ga0209753_10688121	3300027622	Marine	MAEIKPIGWTPDGSHINKGALFVIALVLIGVYCIFADAPFSWLFGST
Ga0209432_10678862	3300027630	Marine	MAEEIKPIGWTPDGSHINKGALFVIVLVLLGVYCIFADNPFGWLFGTEIFPSIEPVK
Ga0209089_101779905	3300027838	Marine	MALKPIGFKPDGSHIHKGALFIVVAVLIGLYCIFTENAFSWLFGSHAHLMEIK
Ga0257108_10365492	3300028190	Marine	MAEIKPIGFKPDGSHIHKGSLLLVVGVLIGLYCIFADAPFSWLFSTSVVEVVK
Ga0257108_10885561	3300028190	Marine	MAELKPIGFKPDGSHIHKGSLLLIVAVLIGLYCIFADAPFSWLFGSTVIEVVK
Ga0257108_11309752	3300028190	Marine	MAEIKPIGFKPDGSHINKCSLLVVVAVLIGLYCIFADAPFAWLFGNSVVEVVK
Ga0257107_10473683	3300028192	Marine	MAELKPIGFKPDGSHINKGAVALVICILIGVYCIFADVPFSWLFGGPQ
Ga0257107_10659852	3300028192	Marine	MALKPIGFKPDGSHIHKGALFVVVGVLIGLYCIFADAPFSWLFGTVEVIK
Ga0257107_10720932	3300028192	Marine	MPEIKPIGFKPDGSHIHKGALLLVVGILIGLYCIFSPTPFAWLFVK
Ga0257107_12128712	3300028192	Marine	MAEPSIKPIGFKPDGSHIHKGSLLLVVAVLIGVYCIFADAPFAWLFGQQTIFPEIK
Ga0257112_100684475	3300028489	Marine	MAEPSIKPIGWKPDGSHINKGALVVIGLIFIGLYCIFADAPFAWLFGDVIIHDLKL
Ga0257112_102259152	3300028489	Marine	MAEIKPIGFKPDGSHIHKGSLLLVVGVLIGLYCIFADAPFSWLFGNTVIEVVK
Ga0257112_102939902	3300028489	Marine	MAEEIKPDGSHINKGVLFTMVVVLIGLYCIFADAPFSWL
Ga0257111_10605203	3300028535	Marine	MELKPIGFKPDGSHIHKGALFVVVAVLIGLYCIFADAPFSWLFGTTPTVIEVIK
Ga0302119_100154237	3300031606	Marine	MAPNIKPIGFKPDGSHINKGALALVLCILIGLYCIFADAPFSWLFGQP
Ga0315328_101978452	3300031757	Seawater	MEYPSIKPIGFKPDGSHINKGALLVVVGVLIGLYCIFADAPFAWLFGTNAIEVVSPMGNM
Ga0310121_100558704	3300031801	Marine	MAEIKPIGFKPDGSHIHKGALFIVVAVLIGLYCIFADAPFAWLFTGGPQ
Ga0310121_101921743	3300031801	Marine	MEYPSIKPIGFKPDGSHIHKGSLFMVVAVLIGLYCIFADAPFAWLFGTTIMEMK
Ga0310121_103464163	3300031801	Marine	MAEIKPIGFKPDGSHIHKGSIFVAVALIIGLYCIVSDAPFSWLFA
Ga0310124_104280121	3300031804	Marine	MEYPSIKPVGFKPDGSHIHKGAVTLVICILIGLYCIFADNAFSWLFGTHIMEIK
Ga0315319_103202391	3300031861	Seawater	MAEIKPIGWTPDGSHINKCSLLVIVAVLIGLYCIFADAPFAWLFGNSVVEVVK
Ga0315319_103646151	3300031861	Seawater	MELKPIGFKPDGSHINKGALLLVVGILIGLYCIFSDAPFAWLFGNTVIEVVK
Ga0315318_100980272	3300031886	Seawater	MAEPSIKPIGFKPDGSHVNKGALALVICICLGLYCIFADNPFSWLFSTNVIEPVKIHTMEIK
Ga0315318_101862362	3300031886	Seawater	MALKPIGFKPDGSHIHKGSLLLVVGVLIGLYCIFADAPFAWLFSTGVVEVVK
Ga0315318_106132692	3300031886	Seawater	MAEIKPIGWTPDGSHINKGAVALSICCIIGLYCIMSDAPFAWLFGNSVVEVVK
Ga0315329_100169134	3300032048	Seawater	MELKPIGFKPDGSHIHKGALFVVVGVLIGLYCIFADAPFAWLFGNTVIEVAK
Ga0315329_100834045	3300032048	Seawater	MAELKPIGFKPDGSHIHKGALLLVVAVLIGLYCIFADAPFSWLFGSTVIEHTMNHVAK
Ga0315329_101116165	3300032048	Seawater	MAEIKPIGFKPDGSHINKGAVALSICCIIGLYCIMSDAPFAWLFGNSVVEVVK
Ga0315329_101453162	3300032048	Seawater	MAELKPIGFKPDGSHINKGALLLVVGVLIGLYCIFADAPFSWLFGSTVIEVVK
Ga0315329_102171333	3300032048	Seawater	MALKPIGFKPDGSHIHKGSLLLVVGVLIGLYCIFADAPFAWLFGNNAIEVVSPMGNMN
Ga0315329_104574843	3300032048	Seawater	MEYPSIKPIGFKPDGSHINKGAIALVICILIGVYCIFADNPFSWLFSTNVVEPVKIHTM
Ga0315333_102581392	3300032130	Seawater	MALKPIGFKPDGSHIHKGSLLLVVGVLIGLYCIFADAPFAWLFSTGVV
Ga0310345_100847941	3300032278	Seawater	KPIGFKPDGSHINKGALVIIGLIFIGLYCIMADAPFAWLFGTAPTVIEVVK
Ga0310345_101040675	3300032278	Seawater	MAEEIKPIGWTPDGSHVNKGALFVVALVLIGVYCIFADAPFSWLFGTPTVIEVVK
Ga0310345_102423413	3300032278	Seawater	MAEIKPIGFKPDGSHINKGALLLVVGVLIGLYCIFADAPFSWLFGSTVIEVVK
Ga0310345_103097021	3300032278	Seawater	MEYPSIKPIGFKPDGSHIHKGALLIVVAVLIGLYCIFADNPFSWLFSTGVK
Ga0310345_103574811	3300032278	Seawater	MALKPIGFKPDGSHINKGALFVVVAVLIGLYCIFADAPFSWLFGNTVIEVVK
Ga0310345_106103103	3300032278	Seawater	MALKPIGFKPDGSHIHKGSLLLVVAVLIGLYCIFADAPFAWLFSTGVVEVVK
Ga0310345_109499822	3300032278	Seawater	MELKPIGFKPDGSHINKCSLLIVVAVLVGLYCIFADAPFSWLFSTTPTVVEHTMNHVAK
Ga0310345_109824451	3300032278	Seawater	KPDGSHINKGALFVVVLILLGLYCIFADTPFSWLFGQYGTAIEVVK
Ga0310345_111532272	3300032278	Seawater	MAELKPIGFKPDGSHINKGALFVIGLVFIGLYCIMADAPFAWLFGTPVIEVVK
Ga0310345_113576141	3300032278	Seawater	MAEIKPIGFKPDGSHIHKGALLLVVGILIGLYCIFADAPFAWLFSNTVVEVVK
Ga0310345_115270252	3300032278	Seawater	MAEIKPIGFKPDGSHIHKGTLFVIVAVLIGLYCIFADAPFAWLFGNSIVEVVK
Ga0315334_100407898	3300032360	Seawater	MAELKPIGFKPDGSHINKGALVIIGLIFIGLYCIMADAPFAWLFGTAPTVIEVVK
Ga0315334_100684616	3300032360	Seawater	MEEPSIKPIGFKPDGSHINKGAIALVVCILIGVYCIFADAPFAWLFSTPMEIK
Ga0315334_101662123	3300032360	Seawater	MAKPSIKPIGFKPDGSHINKGALALVICICIGLYCIFADNPFSWLFSTNVVEPVKIHTMEIK
Ga0315334_106755652	3300032360	Seawater	MGRDGQIKPIGWTPDGSHIHKGALLVVVGVLIGLYCIFADAPFAWLFGNTVIEVVK
Ga0315334_107352034	3300032360	Seawater	NFTQGRNNMAELKPIGFKPDGSHINKGALLLVVGILIGLYCIFADAPFSWLFGNTVIEVV
Ga0315334_110915203	3300032360	Seawater	RNRTMAEIKPIGFKPDGSHVNKGALLVVVGVLIGLYCIFADAPFAWLFGTNAIEVVSPMGNMN
Ga0315334_114422742	3300032360	Seawater	MAEIKPEGWMPDGSHINRCSLLVVVAVLIGLYCIFADAPFSWLFSTGVVEVVK
Ga0315334_114903253	3300032360	Seawater	GFKPDGSHINKGALLLVVGVLIGLYCIFADAPFSWLFSSTVIEVVK
Ga0310342_1009134802	3300032820	Seawater	MAEIKPIGFKPDGSHINKGALLLVVGILIGLYCIFADTPFAWLFGNTVIEVVK
Ga0310342_1014127882	3300032820	Seawater	MAELKPIGWTPDGSHIHKGSLFVIVAVLIGLYCIFADAPFSWLFGNTVIEVVK
Ga0310342_1022045693	3300032820	Seawater	NMAELKPIGFKPDGSHINKGALFVIVLVLIGAYCIFADTPFAWLFGNTVIEVVK
Ga0310342_1024827573	3300032820	Seawater	YTLNSRRNNMAELKPIGFKPDGSHINKGALVIIGLVFIGLYCIMADAPFAWLFGTPVIEVVK
Ga0310342_1035594351	3300032820	Seawater	MAEIKPIGFKPDGSHINKGALFVVVLILLGLYCIFADTPFSWLFGQYGTAIEVVK
Ga0372840_149313_119_277	3300034695	Seawater	MELKPIGFKPDGSHIHKGALFVVVAILIGLYCIFADTPFAWLFGNTVIEVTK
Ga0372840_259375_340_510	3300034695	Seawater	MAEPSIKPIGFKPDGSHVNKGAVALVICILIGLYCIFADNPFSWLFGQPTIFPEIK

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome Family F080150

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences