3300003976: Soil microbial communities from Barrow, Alaska NGEE-2011

Overview

Basic Information

• IMG/M Taxon OID: 3300003976
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0114049 | Gp0110078 | Ga0064219
• Sample Name: Soil microbial communities from Barrow, Alaska NGEE-2011
• Sequencing Status: Permanent Draft
• Sequencing Center: Yale School of Medicine
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 3382450
• Sequencing Scaffolds: 9
• Novel Protein Genes: 9
• Associated Families: 9

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	4
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	2
Not Available	2

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Soil Microbial Communities From Ngee-Artic Barrow Site, Alaska, Usa
• Type: Environmental
• Taxonomy: Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Soil Microbial Communities From Ngee-Artic Barrow Site, Alaska, Usa

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): polar biome → active permafrost layer → soil
• Earth Microbiome Project Ontology (EMPO): Free-living → Non-saline → Soil (non-saline)

Location Information

• Location: Barrow, Alaska
• Coordinates
  • Lat. (^o): N/A
  • Long. (^o): N/A
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F008314	Metagenome / Metatranscriptome	335	Y
F011100	Metagenome / Metatranscriptome	295	Y
F045442	Metagenome / Metatranscriptome	153	Y
F071789	Metagenome	122	Y
F086039	Metagenome	111	Y
F090817	Metagenome / Metatranscriptome	108	Y
F094346	Metagenome / Metatranscriptome	106	Y
F094576	Metagenome / Metatranscriptome	106	Y
F095392	Metagenome / Metatranscriptome	105	N

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0064219_10169	All Organisms → cellular organisms → Bacteria	1764
Ga0064219_10944	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1803
Ga0064219_11086	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1144
Ga0064219_11256	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1768
Ga0064219_11620	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	2216
Ga0064219_11703	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1560
Ga0064219_11863	Not Available	1169
Ga0064219_11976	Not Available	2748
Ga0064219_12151	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1560

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0064219_10169	Ga0064219_101692	F008314	LAEPPASESVEHPGQERSAFPSYEELSADLIEAIDQAGLFIEDVRHHLEPSVGERRFECTVRLSSGEPPSRYHVHLSFAWDALLTYVAAYGAGADCDLYHDDEEAEDCPHHQLPPQPFVELEAEFILGDGGYELHDIAEVSAWVDTVQELLAKVFRDEDRPSVHVGIASLGTTTLVEKFTAEHSWLLDFERPPDFEGIAHQVQNALRLIPQLADRLPI*
Ga0064219_10944	Ga0064219_109445	F045442	VIPTRAGGVEYSRVVATLEMIGTRIPYGVIICAARLGTNDLDETVAWWTGSGVPIWGIIPERVGIAAGPETRLFREGLDAYGKVLRKALRKRAG*
Ga0064219_11086	Ga0064219_110862	F094346	MSIATDSYIGPEVLTVAIPLGSLLLVILWGFFQRRTNRQ*
Ga0064219_11256	Ga0064219_112563	F094576	VREQSATRQELEASIRALLPSKAEIDDLTPSKNSTASVAGVGGIMTGYVWGRYRGRQVRKRRES*
Ga0064219_11620	Ga0064219_116203	F086039	MRIVDQIEQTGANRWGAKYADRATYGEVIAAQYGRAQIWKRITWGFYIVGLALMFAPVGNTLQYVGWMIATVGLFPLVCWLAERFKFRKAVKLATE*
Ga0064219_11703	Ga0064219_117031	F011100	MGLAGMVLSAIAAVAGAIMYWAITYQGTGFRLSTVGLILMIAGAFGFVVSAIVFAVSRSPRSSTRHTIDREVVDSSGN
Ga0064219_11863	Ga0064219_118632	F071789	MRRLLCVALFLATSIGIIVLPAAADTSSGKVLLSFDYSDNSAPASVSNGSFNVIVDVLPGDSTGLVRMFAVAPASTNASSIVCHFQWINQSQAECAFNFPDNGVWAIHAQYVLGPQTDVVGVAVTNLRVLN*
Ga0064219_11976	Ga0064219_119762	F090817	MVDSEDAKDILAVIGLHEDADEDCNNALIDHETGLDSTTVDEVLDHLWKTDQIEGILTLGGRNPSLDSIRRVLPERDRLWGAEGKWRPYR*
Ga0064219_12151	Ga0064219_121513	F095392	MLATLVTASTNAVQVFALIAVILFIIAGIIAFRDKTLWATLICAGLAFPSAAEMYLA*