NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Metagenome / Metatranscriptome Family F095392

Metagenome / Metatranscriptome Family F095392

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences
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Overview

Basic Information
Family ID F095392
Family Type Metagenome / Metatranscriptome
Number of Sequences 105
Average Sequence Length 57 residues
Representative Sequence MLATLVTASTNAVQVFALIAVILFIIAGIIAFRDKTLWATLICAGLAFLSAAVIYLA
Number of Associated Samples 68
Number of Associated Scaffolds 105

Quality Assessment
Transcriptomic Evidence Yes
Most common taxonomic group Bacteria
% of genes with valid RBS motifs 75.24 %
% of genes near scaffold ends (potentially truncated) 27.62 %
% of genes from short scaffolds (< 2000 bps) 75.24 %
Associated GOLD sequencing projects 56
AlphaFold2 3D model prediction No

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.
Hidden Markov Model
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Most Common Taxonomy
Group Bacteria (50.476 % of family members)
NCBI Taxonomy ID 2
Taxonomy All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem Environmental → Terrestrial → Soil → Unclassified → Permafrost → Arctic Peat Soil
(50.476 % of family members)
Environment Ontology (ENVO) Unclassified
(82.857 % of family members)
Earth Microbiome Project Ontology (EMPO) Free-living → Non-saline → Soil (non-saline)
(82.857 % of family members)



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Multiple Sequence Alignments

Select alignment to view:      


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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification: Transmembrane (alpha-helical) Signal Peptide: No Secondary Structure distribution: α-helix: 80.70%    β-sheet: 0.00%    Coil/Unstructured: 19.30%
Feature Viewer
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Gene Neighborhood

Neighboring Pfam domains

Pfam IDName % Frequency in 105 Family Scaffolds
PF00561Abhydrolase_1 21.90
PF05532CsbD 18.10
PF05239PRC 6.67
PF12697Abhydrolase_6 3.81
PF02371Transposase_20 1.90
PF01850PIN 1.90
PF13340DUF4096 1.90
PF11999Ice_binding 0.95
PF07366SnoaL 0.95
PF02899Phage_int_SAM_1 0.95
PF02550AcetylCoA_hydro 0.95
PF13683rve_3 0.95
PF13641Glyco_tranf_2_3 0.95
PF00652Ricin_B_lectin 0.95
PF00005ABC_tran 0.95
PF12728HTH_17 0.95
PF00665rve 0.95
PF13302Acetyltransf_3 0.95
PF13701DDE_Tnp_1_4 0.95
PF00903Glyoxalase 0.95
PF03167UDG 0.95
PF13610DDE_Tnp_IS240 0.95
PF12680SnoaL_2 0.95
PF06210DUF1003 0.95
PF00106adh_short 0.95

Neighboring Clusters of Orthologous Genes (COGs)

COG IDNameFunctional Category % Frequency in 105 Family Scaffolds
COG3237Uncharacterized conserved protein YjbJ, UPF0337 familyFunction unknown [S] 18.10
COG3547TransposaseMobilome: prophages, transposons [X] 1.90
COG0427Propionyl CoA:succinate CoA transferaseEnergy production and conversion [C] 0.95
COG0692Uracil-DNA glycosylaseReplication, recombination and repair [L] 0.95
COG1573Uracil-DNA glycosylaseReplication, recombination and repair [L] 0.95
COG2801Transposase InsO and inactivated derivativesMobilome: prophages, transposons [X] 0.95
COG2826Transposase and inactivated derivatives, IS30 familyMobilome: prophages, transposons [X] 0.95
COG3316Transposase (or an inactivated derivative), DDE domainMobilome: prophages, transposons [X] 0.95
COG3663G:T/U-mismatch repair DNA glycosylaseReplication, recombination and repair [L] 0.95
COG4420Uncharacterized membrane proteinFunction unknown [S] 0.95
COG4584TransposaseMobilome: prophages, transposons [X] 0.95
COG4973Site-specific recombinase XerCReplication, recombination and repair [L] 0.95
COG4974Site-specific recombinase XerDReplication, recombination and repair [L] 0.95


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Phylogeny

NCBI Taxonomy

Select NCBI taxonomy Level:
NameRankTaxonomyDistribution
All OrganismsrootAll Organisms51.43 %
UnclassifiedrootN/A48.57 %

Visualization
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Associated Scaffolds


ScaffoldTaxonomyLengthIMG/M Link
3300001356|JGI12269J14319_10008037All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria8904Open in IMG/M
3300001452|JGI20203J14952_1032401All Organisms → cellular organisms → Bacteria566Open in IMG/M
3300001870|JGI24129J20441_1010880All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria2697Open in IMG/M
3300001870|JGI24129J20441_1051147Not Available907Open in IMG/M
3300002069|JGIcombinedJ21912_10037920Not Available2196Open in IMG/M
3300002069|JGIcombinedJ21912_10074420Not Available1386Open in IMG/M
3300002162|JGI24139J26690_1040514All Organisms → cellular organisms → Bacteria864Open in IMG/M
3300002347|JGIcombinedJ26865_1025878Not Available938Open in IMG/M
3300002549|JGI24130J36418_10101112Not Available658Open in IMG/M
3300003369|JGI24140J50213_10041667Not Available1656Open in IMG/M
3300003369|JGI24140J50213_10168444Not Available693Open in IMG/M
3300003976|Ga0064219_12151All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia1560Open in IMG/M
3300004472|Ga0068974_1004094Not Available522Open in IMG/M
3300004477|Ga0068971_1414470All Organisms → cellular organisms → Bacteria588Open in IMG/M
3300005938|Ga0066795_10104283Not Available844Open in IMG/M
3300005947|Ga0066794_10037366All Organisms → cellular organisms → Bacteria1431Open in IMG/M
3300006055|Ga0097691_1000426All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria37269Open in IMG/M
3300006638|Ga0075522_10016377All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales4751Open in IMG/M
3300006638|Ga0075522_10029307All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia3359Open in IMG/M
3300006638|Ga0075522_10086685All Organisms → cellular organisms → Bacteria1720Open in IMG/M
3300006638|Ga0075522_10210068Not Available978Open in IMG/M
3300006638|Ga0075522_10211145All Organisms → cellular organisms → Bacteria975Open in IMG/M
3300006638|Ga0075522_10293240Not Available790Open in IMG/M
3300006638|Ga0075522_10377423Not Available674Open in IMG/M
3300006642|Ga0075521_10117258Not Available1232Open in IMG/M
3300006642|Ga0075521_10145719Not Available1108Open in IMG/M
3300006795|Ga0075520_1062694All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria1754Open in IMG/M
3300006795|Ga0075520_1099881Not Available1318Open in IMG/M
3300006795|Ga0075520_1288446All Organisms → cellular organisms → Bacteria676Open in IMG/M
3300006795|Ga0075520_1334860All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales → unclassified Myxococcales → Myxococcales bacterium618Open in IMG/M
3300006949|Ga0075528_10148812Not Available626Open in IMG/M
3300009029|Ga0066793_10803664Not Available534Open in IMG/M
3300009520|Ga0116214_1095168All Organisms → cellular organisms → Bacteria1094Open in IMG/M
3300009520|Ga0116214_1146762Not Available877Open in IMG/M
3300009525|Ga0116220_10405791Not Available610Open in IMG/M
3300009672|Ga0116215_1350113Not Available640Open in IMG/M
3300009683|Ga0116224_10168969Not Available1051Open in IMG/M
3300009698|Ga0116216_10648324All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Acidimicrobiia → Acidimicrobiales → environmental samples → uncultured Acidimicrobiales bacterium635Open in IMG/M
3300009698|Ga0116216_10650445Not Available634Open in IMG/M
3300009700|Ga0116217_10108923All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria1887Open in IMG/M
3300009824|Ga0116219_10031954All Organisms → cellular organisms → Bacteria3174Open in IMG/M
3300009824|Ga0116219_10097797All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria1713Open in IMG/M
3300010379|Ga0136449_100234353All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium3433Open in IMG/M
3300010379|Ga0136449_100984693All Organisms → cellular organisms → Bacteria1360Open in IMG/M
3300010379|Ga0136449_102867129Not Available678Open in IMG/M
3300010379|Ga0136449_103713493Not Available576Open in IMG/M
3300014155|Ga0181524_10164200Not Available1131Open in IMG/M
3300014156|Ga0181518_10032422All Organisms → cellular organisms → Bacteria3359Open in IMG/M
3300014156|Ga0181518_10283110Not Available831Open in IMG/M
3300014158|Ga0181521_10475447Not Available602Open in IMG/M
3300014162|Ga0181538_10354679Not Available788Open in IMG/M
3300014164|Ga0181532_10074789All Organisms → cellular organisms → Bacteria → Terrabacteria group2162Open in IMG/M
3300014200|Ga0181526_10937607All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria544Open in IMG/M
3300014490|Ga0182010_10004828All Organisms → cellular organisms → Bacteria6348Open in IMG/M
3300014491|Ga0182014_10003631All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria18341Open in IMG/M
3300016750|Ga0181505_10030204Not Available744Open in IMG/M
3300016750|Ga0181505_10219170All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria1015Open in IMG/M
3300016750|Ga0181505_10863261All Organisms → cellular organisms → Bacteria581Open in IMG/M
3300016750|Ga0181505_10964314All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria830Open in IMG/M
3300017946|Ga0187879_10147736All Organisms → cellular organisms → Bacteria1331Open in IMG/M
3300018017|Ga0187872_10349947Not Available635Open in IMG/M
3300018040|Ga0187862_10620068Not Available639Open in IMG/M
3300018040|Ga0187862_10623551Not Available636Open in IMG/M
3300023090|Ga0224558_1045741All Organisms → cellular organisms → Bacteria1831Open in IMG/M
3300025457|Ga0208850_1016562Not Available1345Open in IMG/M
3300025474|Ga0208479_1024657All Organisms → Viruses → Predicted Viral1266Open in IMG/M
3300025481|Ga0208079_1009133All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria3710Open in IMG/M
3300025484|Ga0208587_1010071Not Available3581Open in IMG/M
3300025484|Ga0208587_1032314Not Available1449Open in IMG/M
3300025504|Ga0208356_1061835All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales → unclassified Myxococcales → Myxococcales bacterium733Open in IMG/M
3300025527|Ga0208714_1047935All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria935Open in IMG/M
3300025544|Ga0208078_1009839All Organisms → cellular organisms → Bacteria2291Open in IMG/M
3300025574|Ga0208717_1016254All Organisms → cellular organisms → Bacteria2058Open in IMG/M
3300025625|Ga0208219_1004760All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria4677Open in IMG/M
3300025650|Ga0209385_1003177Not Available7065Open in IMG/M
3300025650|Ga0209385_1051132All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria1509Open in IMG/M
3300025650|Ga0209385_1188298Not Available581Open in IMG/M
3300025650|Ga0209385_1211305All Organisms → cellular organisms → Bacteria530Open in IMG/M
3300025664|Ga0208849_1031877Not Available1680Open in IMG/M
3300025664|Ga0208849_1144071Not Available623Open in IMG/M
3300025664|Ga0208849_1180370Not Available531Open in IMG/M
3300025725|Ga0209638_1008035All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia5787Open in IMG/M
3300025725|Ga0209638_1020760Not Available3129Open in IMG/M
3300025725|Ga0209638_1223055Not Available554Open in IMG/M
3300025846|Ga0209538_1200741Not Available743Open in IMG/M
3300025852|Ga0209124_10208100All Organisms → cellular organisms → Bacteria770Open in IMG/M
3300025854|Ga0209176_10209936Not Available502Open in IMG/M
3300025862|Ga0209483_1089704All Organisms → cellular organisms → Bacteria1363Open in IMG/M
3300025862|Ga0209483_1107311Not Available1213Open in IMG/M
3300025864|Ga0209429_10226195Not Available748Open in IMG/M
3300025878|Ga0209584_10039722Not Available1647Open in IMG/M
3300025878|Ga0209584_10253492Not Available674Open in IMG/M
3300026271|Ga0209880_1009054All Organisms → cellular organisms → Bacteria2676Open in IMG/M
3300027497|Ga0208199_1126974Not Available521Open in IMG/M
3300027625|Ga0208044_1139723All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae678Open in IMG/M
3300027662|Ga0208565_1018334All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria2573Open in IMG/M
3300027696|Ga0208696_1146762All Organisms → cellular organisms → Bacteria765Open in IMG/M
3300027905|Ga0209415_10514852All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria916Open in IMG/M
3300027905|Ga0209415_10646916All Organisms → cellular organisms → Bacteria771Open in IMG/M
3300031670|Ga0307374_10073848All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria3212Open in IMG/M
3300032160|Ga0311301_10046518All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria10142Open in IMG/M
3300032160|Ga0311301_10125215All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium4813Open in IMG/M
3300032160|Ga0311301_10129812All Organisms → cellular organisms → Bacteria4690Open in IMG/M
3300033888|Ga0334792_047461Not Available1349Open in IMG/M
3300034125|Ga0370484_0223998Not Available518Open in IMG/M



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Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:
HabitatTaxonomyDistribution
Arctic Peat SoilEnvironmental → Terrestrial → Soil → Unclassified → Permafrost → Arctic Peat Soil50.48%
Peatlands SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Peatlands Soil24.76%
PeatlandEnvironmental → Aquatic → Freshwater → Wetlands → Bog → Peatland7.62%
BogEnvironmental → Aquatic → Freshwater → Wetlands → Bog → Bog6.67%
SoilEnvironmental → Terrestrial → Soil → Wetlands → Permafrost → Soil2.86%
SoilEnvironmental → Terrestrial → Peat → Unclassified → Unclassified → Soil1.90%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Soil0.95%
Untreated Peat SoilEnvironmental → Terrestrial → Soil → Wetlands → Unclassified → Untreated Peat Soil0.95%
FenEnvironmental → Terrestrial → Soil → Wetlands → Permafrost → Fen0.95%
BogEnvironmental → Terrestrial → Soil → Wetlands → Permafrost → Bog0.95%
Prmafrost SoilEnvironmental → Terrestrial → Soil → Wetlands → Permafrost → Prmafrost Soil0.95%
SoilEnvironmental → Terrestrial → Soil → Clay → Unclassified → Soil0.95%

Visualization
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Associated Samples

Taxon OIDSample NameHabitat TypeIMG/M Link
3300001356Peat soil microbial communities from Weissenstadt, Germany - SII-SIP-2007EnvironmentalOpen in IMG/M
3300001452Arctic peat soil from Barrow, Alaska - NGEE Surface sample F53-1 deep-092012EnvironmentalOpen in IMG/M
3300001870Arctic peat soil from Barrow, Alaska - Barrow Graham LP Ref core NGADG0002-211EnvironmentalOpen in IMG/M
3300002069Barrow Graham LP Ref core NGADG0002-212 (Barrow Graham LP Ref core NGADG0002-212,NGADG0004-211, ASSEMBLY_DATE=20131010)EnvironmentalOpen in IMG/M
3300002162Arctic peat soil from Barrow, Alaska - Barrow Graham LP Incubations 002-21AEnvironmentalOpen in IMG/M
3300002347Arctic peat soil from Barrow, Alaska - NGEE Surface sample 415-1 deep-072012 (NGEE Surface samples 415 (1, 2, 3 deep-072012) AP id is 1030520, ASSEMBLY_DATE=20131219)EnvironmentalOpen in IMG/M
3300002549Arctic peat soil from Barrow, Alaska - Barrow Graham LP Ref core NGADG0002-212EnvironmentalOpen in IMG/M
3300003369Arctic peat soil from Barrow, Alaska - Barrow Graham LP Incubations 002-22AEnvironmentalOpen in IMG/M
3300003976Soil microbial communities from Barrow, Alaska NGEE-2011EnvironmentalOpen in IMG/M
3300004472Peat soil microbial communities from Weissenstadt, Germany - Metatranscriptome 71 (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300004477Peat soil microbial communities from Weissenstadt, Germany - Metatranscriptome 65 (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300005938Permafrost soil microbial communities from the Arctic, to analyse light accelerated degradation of dissolved organic matter (DOM) - Permafrost soil replicate 2 DNA2013-191EnvironmentalOpen in IMG/M
3300005947Permafrost soil microbial communities from the Arctic, to analyse light accelerated degradation of dissolved organic matter (DOM) - Permafrost soil replicate 2 DNA2013-190EnvironmentalOpen in IMG/M
3300006055Arctic peat soil from Barrow, Alaska - NGEE Surface sample 210-1 deep-072012EnvironmentalOpen in IMG/M
3300006638Arctic peat soil microbial communities from the Barrow Environmental Observatory site, Barrow, Alaska, USA - NGEE PermafrostL2-AEnvironmentalOpen in IMG/M
3300006642Arctic peat soil microbial communities from the Barrow Environmental Observatory site, Barrow, Alaska, USA - NGEE PermafrostAB12-DEnvironmentalOpen in IMG/M
3300006795Arctic peat soil microbial communities from the Barrow Environmental Observatory site, Barrow, Alaska, USA - NGEE PermafrostAB12-BEnvironmentalOpen in IMG/M
3300006949Arctic peat soil microbial communities from the Barrow Environmental Observatory site, Barrow, Alaska, USA - NGEE Permafrost159B-16BEnvironmentalOpen in IMG/M
3300009029Permafrost soil microbial communities from the Arctic, to analyse light accelerated degradation of dissolved organic matter (DOM) - Permafrost soil replicate 1 DNA2013-189EnvironmentalOpen in IMG/M
3300009520Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_1_NS metaGEnvironmentalOpen in IMG/M
3300009525Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_7_NC metaGEnvironmentalOpen in IMG/M
3300009672Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_2_FS metaGEnvironmentalOpen in IMG/M
3300009683Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_b_LC metaGEnvironmentalOpen in IMG/M
3300009698Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_3_AS metaGEnvironmentalOpen in IMG/M
3300009700Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_4_PS metaGEnvironmentalOpen in IMG/M
3300009824Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_6_BS metaGEnvironmentalOpen in IMG/M
3300010379Sb_50d combined assemblyEnvironmentalOpen in IMG/M
3300014155Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin05_60_metaGEnvironmentalOpen in IMG/M
3300014156Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin01_60_metaGEnvironmentalOpen in IMG/M
3300014158Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin02_60_metaGEnvironmentalOpen in IMG/M
3300014162Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin23_30_metaGEnvironmentalOpen in IMG/M
3300014164Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin11_30_metaGEnvironmentalOpen in IMG/M
3300014200Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin06_30_metaGEnvironmentalOpen in IMG/M
3300014490Permafrost microbial communities from Stordalen Mire, Sweden - 611E1M metaGEnvironmentalOpen in IMG/M
3300014491Permafrost microbial communities from Stordalen Mire, Sweden - 612S2D metaGEnvironmentalOpen in IMG/M
3300016750Metatranscriptome of peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin05_30_metaT (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300017946Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_19_10EnvironmentalOpen in IMG/M
3300018017Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_16_40EnvironmentalOpen in IMG/M
3300018040Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_10_150EnvironmentalOpen in IMG/M
3300023090Peat soil microbial communities from Stordalen Mire, Sweden - 717 S3 20-24EnvironmentalOpen in IMG/M
3300025457Arctic peat soil from Barrow, Alaska - NGEE Surface sample 210-2 shallow-092012 (SPAdes)EnvironmentalOpen in IMG/M
3300025474Arctic peat soil from Barrow, Alaska - NGEE Surface sample 415-3 deep-072012 (SPAdes)EnvironmentalOpen in IMG/M
3300025481Arctic peat soil from Barrow, Alaska - NGEE Surface sample 210-2 deep-092012 (SPAdes)EnvironmentalOpen in IMG/M
3300025484Arctic peat soil from Barrow, Alaska - NGEE Surface sample 210 deep-092012 (SPAdes)EnvironmentalOpen in IMG/M
3300025504Arctic peat soil from Barrow, Alaska - NGEE Surface sample 53-1 shallow-072012 (SPAdes)EnvironmentalOpen in IMG/M
3300025527Arctic peat soil from Barrow, Alaska - NGEE Surface sample 415-1 shallow-072012 (SPAdes)EnvironmentalOpen in IMG/M
3300025544Arctic peat soil from Barrow, Alaska - NGEE Surface sample 53-2 deep-072012 (SPAdes)EnvironmentalOpen in IMG/M
3300025574Arctic peat soil from Barrow, Alaska - NGEE Surface sample F53-3 shallow (SPAdes)EnvironmentalOpen in IMG/M
3300025625Arctic peat soil from Barrow, Alaska - NGEE Surface sample 53-2 shallow-072012 (SPAdes)EnvironmentalOpen in IMG/M
3300025650Arctic peat soil microbial communities from the Barrow Environmental Observatory site, Barrow, Alaska, USA - NGEE PermafrostAB12-B (SPAdes)EnvironmentalOpen in IMG/M
3300025664Arctic peat soil from Barrow, Alaska - NGEE Surface sample 53-3 deep-072012 (SPAdes)EnvironmentalOpen in IMG/M
3300025725Arctic peat soil from Barrow, Alaska - Barrow Graham LP Ref core NGADG0002-211 (SPAdes)EnvironmentalOpen in IMG/M
3300025846Arctic peat soil from Barrow, Alaska - Barrow Graham LP Ref core NGADG0004-211 (SPAdes)EnvironmentalOpen in IMG/M
3300025852Arctic peat soil from Barrow, Alaska - Barrow Graham LP Incubations 011-22A (SPAdes)EnvironmentalOpen in IMG/M
3300025854Arctic peat soil microbial communities from the Barrow Environmental Observatory site, Barrow, Alaska, USA - NGEE Permafrost305-11B (SPAdes)EnvironmentalOpen in IMG/M
3300025862Arctic peat soil microbial communities from the Barrow Environmental Observatory site, Barrow, Alaska, USA - NGEE PermafrostL2-A (SPAdes)EnvironmentalOpen in IMG/M
3300025864Arctic peat soil from Barrow, Alaska - Barrow Graham LP Ref core NGADG0004-212 (SPAdes)EnvironmentalOpen in IMG/M
3300025878Arctic peat soil microbial communities from the Barrow Environmental Observatory site, Barrow, Alaska, USA - NGEE PermafrostAB12-D (SPAdes)EnvironmentalOpen in IMG/M
3300026271Permafrost soil microbial communities from the Arctic, to analyse light accelerated degradation of dissolved organic matter (DOM) - Permafrost soil replicate 2 DNA2013-191 (SPAdes)EnvironmentalOpen in IMG/M
3300027497Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_1_NS metaG (SPAdes)EnvironmentalOpen in IMG/M
3300027625Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_c_BC metaG (SPAdes)EnvironmentalOpen in IMG/M
3300027662Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_2_FS metaG (SPAdes)EnvironmentalOpen in IMG/M
3300027696Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_b_LC metaG (SPAdes)EnvironmentalOpen in IMG/M
3300027905Peat soil microbial communities from Weissenstadt, Germany - SII-SIP-2007 (SPAdes)EnvironmentalOpen in IMG/M
3300031670Soil microbial communities from Risofladan, Vaasa, Finland - OX-3EnvironmentalOpen in IMG/M
3300032160Sb_50d combined assembly (MetaSPAdes)EnvironmentalOpen in IMG/M
3300033888Peat soil microbial communities from Stordalen Mire, Sweden - 713 P-3-X1EnvironmentalOpen in IMG/M
3300034125Peat soil microbial communities from wetlands in Alaska, United States - Sheep_creek_tus_01_15EnvironmentalOpen in IMG/M

Geographical Distribution
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Family Sequences

Protein ID Sample Taxon ID Habitat Sequence
JGI12269J14319_10008037113300001356Peatlands SoilMLATLVNASANAVQVFALIAAILFIIAGIIAFMDKTVWATLICAGLAFLSAAVIFLT*
JGI20203J14952_103240123300001452Arctic Peat SoilMTNKEPQMLATLVTASTNAVQVFALIAVILFIIAGIIAFRDKTLWATLICAGLAFLSAAVIYLA*
JGI24129J20441_101088013300001870Arctic Peat SoilPIIPMTNKEPQMLATLVTASPNAVQVFALIAVILFIVAGIITLRDKTLWATLXCAGLAFLSAAVMYLA*
JGI24129J20441_105114713300001870Arctic Peat SoilMTNKEPQMLATLVTASTNAVQVFALIAVIMFIIAGIITFRDKTLWATLICAGLAFLSAAVMYLA*
JGIcombinedJ21912_1003792023300002069Arctic Peat SoilMTNNPHDEKEPQMLATLVTASPNAVQVFALIAVILFXVAGIITXRDKTLWATLICAGLAFLSAAVMYLA*
JGIcombinedJ21912_1007442023300002069Arctic Peat SoilMTNKEPQMLATLVTASTNAVQVFALIAVILFIIAGIITLRDKTLWATLICAGLAFLSAAVXYLA*
JGI24139J26690_104051413300002162Arctic Peat SoilMLATLVTASPNAVQVFALIAVILFIIAGIITLRDKTLWATLICAGLAFLSAAVIYLA*
JGIcombinedJ26865_102587833300002347Arctic Peat SoilMLATLVTASTNAVQVFALIAVILFIIAGIIAFRDKTLWATLICAGLAFL
JGI24130J36418_1010111223300002549Arctic Peat SoilTKKEPQMLATLVNASTNAVQVFALIAVIVFIIAGIIAFRDKTLWATLICAGLAFLSAAVIYLA*
JGI24140J50213_1004166713300003369Arctic Peat SoilMLATLVTASPNAVQVFALIAVILFIVAGIITLRDKTLWATLVCAGLAFLSAAVMYLA*
JGI24140J50213_1016844423300003369Arctic Peat SoilMLATLVNASTNAVQVFALIAVILFIIAGIIAFRDRILWATLICAGLAFL
Ga0064219_1215133300003976SoilMLATLVTASTNAVQVFALIAVILFIIAGIIAFRDKTLWATLICAGLAFPSAAEMYLA*
Ga0068974_100409413300004472Peatlands SoilMLATLVNASANAVQVFALIGVILFIIAGIIAFMDKTVWATLICAGLAFLSAAVIFLT*
Ga0068971_141447013300004477Peatlands SoilPMLATLVNASANAVQVFALIAVVVFIIAAIIAFMDKTVWATLVCAGLALLSAAVIFLA*
Ga0066795_1010428323300005938SoilMLATLVTASPNAVQVFALIAVILFVVAGIITLRDKTLWATLICAGLAFLSAAVMYLA*
Ga0066794_1003736623300005947SoilMLATLVTASPNAVQVFALIAVILFIIAGIITLRDKTLWATLICAGLAFLSAAVMYLA*
Ga0097691_1000426283300006055Arctic Peat SoilMLATLVNASTNAVQVFALIAVIVFIIAGIIAFRDKTLWATLICAGLAFLSAAVIYLA*
Ga0075522_1001637713300006638Arctic Peat SoilSLKKKEPQMLATLVNASTNAVQVFALIAVILFIIAGIIAFGDKTLWATLICAGLAFLSAAVIYLA*
Ga0075522_1002930723300006638Arctic Peat SoilMLATLVNASTNAVQVFALVAVILFIIAGIIAFREKTLWATLICAGLAFLSAAVIYLA*
Ga0075522_1008668553300006638Arctic Peat SoilMLATLVNASASAVQVFGLIAVIVFVIAGIIAFTDKTVWATLICAGLAFLS
Ga0075522_1021006823300006638Arctic Peat SoilMLATLVTASTNAVQVFALIAVILFIIAGIITLRDKTLWATLICAGLAFLSAAVIYLA*
Ga0075522_1021114523300006638Arctic Peat SoilSLKKKEPQMLATLVNASTNAVQVFALIAVILFIIAGIIAFRDKTLWATLICAGLAFLSAAVIYLA*
Ga0075522_1029324023300006638Arctic Peat SoilMLATLVNASTNAVQVFALIAVILFIIAGIIAFRDKTLWATLICVGLAFLSAAVIYLA*
Ga0075522_1037742333300006638Arctic Peat SoilMLATLVNASTNAVQVFALIAVILFFIAGIIAFRDKTLWATLICAGLAFLSAAVIYLA*
Ga0075521_1011725833300006642Arctic Peat SoilMLATLVNASTNAVQVFALIAVIVFVIAGIIAFRDNTLWATLICAGLAFLSAAVIYLA*
Ga0075521_1014571923300006642Arctic Peat SoilMLATLVNASTNAVQVFALIAAILFIIAGIIAFRDRTLWATLICAGLAFLSAAVIYLA*
Ga0075520_106269433300006795Arctic Peat SoilMLATLVNASTNAVQVFALIAVILFIVAGIIAFRDKTLWATLICAGLAFLSAAVIYLA*
Ga0075520_109988113300006795Arctic Peat SoilTLVNASTNAVQVFALIAAILFIIAGIITLSDKTLWATLICAGLAFLSAAVMYLA*
Ga0075520_128844623300006795Arctic Peat SoilMLATLVNASTNAVQVFALIAVIVFVIAGIIAFRDNTLWATLIRAGLAFLSAAVVYLA*
Ga0075520_133486023300006795Arctic Peat SoilMTNKEPQMLATLVTASPNAVQVFALIAVILFIVAGIITLRDKTLWATLICAGLAFLSAAVIYLA*
Ga0075528_1014881223300006949Arctic Peat SoilKEPQMLATLVTASTNAVQVFALIAVIVFIIAGIIAFRDKTLWATLICAGLAFLSAAVIYLA*
Ga0066793_1080366413300009029Prmafrost SoilMLATLVTASPNAVQVFALIAVILFIIAGIITLRDKTLWATLICAGLAFLSAA
Ga0116214_109516823300009520Peatlands SoilMLATLVNASTNAVQVFALIAVVVFIIAAIIAFMDKTVWATLVCAGLALLSAAVIFLA*
Ga0116214_114676223300009520Peatlands SoilMLATLVNASANAVQVFALIAVILFIIAGIIAFMDKTIWATLICAGLAFLSAAVIFLT*
Ga0116220_1040579123300009525Peatlands SoilMLATLVNASANAVQVFALIAAILFIIAGIIAFMDKTVWATLICAGLAFLSAAVIF
Ga0116215_135011323300009672Peatlands SoilMLATLVNASANAVQVFALIGVILFIIAGIIAFMDKTVWATLICAGLAFLSAAVIFLT
Ga0116224_1016896933300009683Peatlands SoilMLATLVNASANAVQVFALIAAILFIIAGIIAFMDKTIWATLICAGLAFLSAAVIFLT*
Ga0116216_1064832413300009698Peatlands SoilMFATLVNPSTTAVQVFALVAVIVFIVAGIIAFTDKTVWATLICTGLALLSAAVIFLA*
Ga0116216_1065044513300009698Peatlands SoilMLATLVNASANAVQVFALIAVVVFIIAAIIAFTDKTVWATLICVGLALLSAAVIF
Ga0116217_1010892313300009700Peatlands SoilMLATLVNASANAVQVFALIAAILFIIAGIIAFMDKTVWATLVCAGLALLSAAVIFLT*
Ga0116219_1003195463300009824Peatlands SoilMLATLVNASANAVQVFALIAVVVFIIAAIIAFMDKTVWATLVCAGLALLSAAVIFLA*
Ga0116219_1009779743300009824Peatlands SoilMLATLVNASANAVQVFALIGVILFIIAGIIAFMDKTVWATLICAGLAFLSAAVIFLA*
Ga0136449_10023435323300010379Peatlands SoilMLATLVNASANAVQVFALIAVILFIIAGIIAFTDKTVWATLICAGLAFLSAAVIFLT*
Ga0136449_10098469323300010379Peatlands SoilMLATLVNASANAVQVFALIAVVVFIIAAIIAFTDKTVWATLICLGLALLSAAVIFLA*
Ga0136449_10286712923300010379Peatlands SoilMLATLVNASANAVQVFALIAVVLFVIAGIIAFMDKTVWATLVCAGL
Ga0136449_10371349323300010379Peatlands SoilMLATLVNASSNAVQVFALIAVIVFVIAGIIAFMDKTIWAMLLCAGLALLSAAVMFLA*
Ga0181524_1016420013300014155BogTLVNASPTAVQVFGLIAVIVFLVAGFIAYREKTVWATLICLGLAFVSAAVIFLA*
Ga0181518_1003242233300014156BogMLATLVNASTNAVQVFALIAVILFIIAGIIAFRDRTLWAGLICAGLAFLSAAVIYLA*
Ga0181518_1028311023300014156BogMLATLVTASTNAVQVFALIAVILFFIAGIIAFRDKTLWATLICAGLAFLSAAVMYLA*
Ga0181521_1047544713300014158BogMLATLVNASATAVQVFALVAVIVFIIAGIIAFQDKTVWATLICAGLAFLSAAVIFLA*
Ga0181538_1035467923300014162BogTASTNAVQVFALIAVILFFIAGIIAFRDKTLWATLICAGLAFLSAAVMYLA*
Ga0181532_1007478963300014164BogMTDKESQMLATLVTASTNAVQVFALIAVILFIVAGIIAFRDKTLWATLICAGLAFLSAAVMYLA*
Ga0181526_1093760713300014200BogRAASEVVRRHARTNKEAPMLATLVNASATAVQVLALVAVIVFIIAGIISFQEKTIWATLICAGLAFLSAAVIFLA*
Ga0182010_1000482883300014490FenMTTKEPQVLATLVTASTNAVQVFALIAVILFIIAGIIAFRDKTLWATLICAGLAFLSAAVIYLA*
Ga0182014_1000363193300014491BogMTKTLVTASTNAVQVFALIAVILFIIAGIIAFRDKTLWATLICAGLAFLSAAVMYLA*
Ga0181505_1003020413300016750PeatlandMLATLVNSSPTAVQVFALVAVIVFVIAGIIAFQDKTVWATLICLGLAFLSAAVIFLA
Ga0181505_1021917023300016750PeatlandMLDTLVSASPTAVQVFSLIAVIVFLVAGFIAFREKTVWATLICVGLACVSAAVIFLA
Ga0181505_1086326123300016750PeatlandMLATLVTASTNAVQVFALIAVILFIVAGIIAFRDKTLWATLICAGLAFLSAAVMYLA
Ga0181505_1096431423300016750PeatlandMLATLVNASATAVQVLALVAVIVFIIAGIISFQEKTIWATLICAGLAFLSAAVIFLA
Ga0187879_1014773623300017946PeatlandMLATLVTASTNAVQVFALIAVILFFIAGIIAFRDKTLWATLICAGLAFLSAAVMYLA
Ga0187872_1034994723300018017PeatlandMLATLVNASPTAVQVFGLIAVIVFLVAGFIAYREKTVWATLICLGLAFVSAAVIFLA
Ga0187862_1062006823300018040PeatlandTLVTASTNAVQVFALIAVILFFIAGIIAFRDKTLWATLICAGLAFLSAAVMYLA
Ga0187862_1062355123300018040PeatlandMLATLVNASTNAVQVFALIAVILFIIAGIIAFRDRTLWAGLICAGLAFLSAAVIYLA
Ga0224558_104574123300023090SoilMLATLVNASTNAVQVFAVILFIIAGIIAFRDKTLLATLICAGLAFLSAAVIYLA
Ga0208850_101656223300025457Arctic Peat SoilMLATLVTASPNAVQVFALIAVILFIIAGIITLRDKTLWATLICAGLAFLSAAVMYLA
Ga0208479_102465733300025474Arctic Peat SoilMLATLVTASTNAVQVFALIAVILFIIAGIIAFRDKTLWATLICAGLAFLSAAVMYLA
Ga0208079_100913333300025481Arctic Peat SoilMLATLVNASTNAVQVFALIAVIVFIIAGIIAFRDKTLWATLICAGLAFLSAAVIYLA
Ga0208587_101007153300025484Arctic Peat SoilMLATLVNASTNAVQVFALIAVILFIIAGIIAFRDKTLWATLICVGLAFLSAAVIYLA
Ga0208587_103231433300025484Arctic Peat SoilMLATLVTASPNAVQVFALIAVILFIVAGIITLRDKTLWATLVCAGLAFLSAAVMYLA
Ga0208356_106183523300025504Arctic Peat SoilMLATLVTASTNAVQVLALIAVILFIIAGIIAFRDKTLWATLICAGLAFLSAAVIYLA
Ga0208714_104793523300025527Arctic Peat SoilMLATLVNASTNAVQVFALIAVILFIIAFRDKTLWATLICVGLAFLSAAVIYLAKRHAPGTWGA
Ga0208078_100983923300025544Arctic Peat SoilMTNKEPQMLATLVTASTNAVQVLALIAVILFIVAGIIAFRDKTLWATLICAGLAFLSAAVIYLA
Ga0208717_101625423300025574Arctic Peat SoilMLATLVTASTNAVQVLALIAVILFIVAGIIAFRDKTLWATLICAGLAFLSAAVIYLA
Ga0208219_100476053300025625Arctic Peat SoilMLATLVTASTNAVQVFALIAVILFIIAGIIAFRDKTLWATLICAGLAFLSAAVIYLA
Ga0209385_1003177113300025650Arctic Peat SoilMLATLVNASTNAVQVFALIAVILFIIAFRDKTLWATLICVGLAFLSAAVIYLA
Ga0209385_105113213300025650Arctic Peat SoilMLATLVNASTNAVQVFALIAVILFIVAGIIAFRDKTLWATLICAGLAFLSAAVIYLA
Ga0209385_118829823300025650Arctic Peat SoilMLATLVNASTNAVQVFALIAAILFIIAGIIAFRDRTLWATLICAGLAFLSAAVIYLA
Ga0209385_121130513300025650Arctic Peat SoilHSWLTKEEPQMLATLVNASTNAVQVFALIAVIVFVIAGIIAFRDNTLWATLIRAGLAFLSAAVVYLA
Ga0208849_103187713300025664Arctic Peat SoilMLATLVNASTNAVQVFALIAVILFIIAGIIAFGDKTLWATLICAGLAFLSAAVIYLA
Ga0208849_114407113300025664Arctic Peat SoilMLATLVNASANAVQVFALIAVILFIIAGIIAFMDKTIWATLICAGLAFLSAAVIFL
Ga0208849_118037023300025664Arctic Peat SoilMLATLVNASANAVQVFALIAAILFIIAGIIAFMDKTVWATLVCAGLAFLSASVIFLT
Ga0209638_100803523300025725Arctic Peat SoilMLATLVNASTNAVQVFALIAVILFIIAGIIAFRDRTPWATLICAGLAFLSAAVIYLA
Ga0209638_102076013300025725Arctic Peat SoilMLATLVNASTNAVQVFALIAVILFIIAGIIAFRDKTLWATLICAGLAFLSVSAFKYFPSD
Ga0209638_122305513300025725Arctic Peat SoilMLATLVTASTNAVQVFALIAVIMFIIAGIITFRDKTLWATLICAGLAFLSAAVMYLA
Ga0209538_120074123300025846Arctic Peat SoilMLATLVTASTNAVQVFALIAVILFVVAGIITLRDKTLWATLICAGLAFLSAAVMYLA
Ga0209124_1020810023300025852Arctic Peat SoilMLATLVTASTNAVQVFALIAVILFIIAGIITLRDKTLWATLICAGLAFLSAAVIYLA
Ga0209176_1020993613300025854Arctic Peat SoilMLATLVNASTNAVQVFALIAVIVFIIAGIIAFRDKTLWATLICAGLAFLSAA
Ga0209483_108970413300025862Arctic Peat SoilQMLATLVNASTNAVQVFALIAVILFIIAGIIAFRDKTLWATLICAGLAFLSAAVIYLA
Ga0209483_110731123300025862Arctic Peat SoilMLATLVNASTNAVQVFALVAVILFIIAGIIAFREKTLWATLICAGLAFLSAAVIYLA
Ga0209429_1022619513300025864Arctic Peat SoilMLATLVTASTNAVQVFALIAVILFIIAGIITLRDKTLWATLICAGLAFLSAAVMYLA
Ga0209584_1003972233300025878Arctic Peat SoilMTTKEPQMLATLVNASTNAVQVFALIAVILFIIAFRDKTLWATLICVGLAFLSAAVIYLA
Ga0209584_1025349213300025878Arctic Peat SoilMLATLVNASTNAVQVFALIAVIVFVIAGIIAFRDNTLWATLICAGLAFL
Ga0209880_100905433300026271SoilMLATLVTASPNAVQVFALIAVILFVVAGIITLRDKTLWATLICAGLAFLSAAVMYLA
Ga0208199_112697413300027497Peatlands SoilMLATLVNASANAVQVFALIAVILFIIAGIIAFMDKTIWATLICAGLAFLSAAVIFLT
Ga0208044_113972323300027625Peatlands SoilMLATLVNASTNAVQVFALIAVVVFIIAAIIAFMDKTVWATLVCAGLALLSAAVIFLA
Ga0208565_101833443300027662Peatlands SoilMLATLVNASANAVQVFALIAAILFIIAGIIAFMDKTVWATLICAGLAFLSAAVIFLT
Ga0208696_114676233300027696Peatlands SoilNASTNAVQVFALIAVVVFIIAAIIAFMDKTVWATLVCAGLALLSAAVIFLA
Ga0209415_1051485223300027905Peatlands SoilMLATLVNASANAVQVFALIGVILFIIAGIIAFMDKTVWATLICAGLAFLSAAVIFLA
Ga0209415_1064691633300027905Peatlands SoilANAVQVFALIAVVVFIIAGIIAFMDKTVWATLVCAGLALLSAAVIFLA
Ga0307374_1007384853300031670SoilMLATLVNASANAVQVFALIAVILFIIAGIIAFMDKTIWATLICAGLAFLSAAVIFIT
Ga0311301_1004651893300032160Peatlands SoilMLATLVNASANAVQVFALIAVVVFIIAAIIAFMDKTVWATLVCAGLALLSAAVIFLA
Ga0311301_1012521563300032160Peatlands SoilMLATLVNASANAVQVFALIAVILFIIAGIIAFTDKTVWATLICAGLAFLSAAVIFLT
Ga0311301_1012981233300032160Peatlands SoilMFATLVNPSTTAVQVFALVAVIVFIVAGIIAFTDKTVWATLICTGLALLSAAVIFLA
Ga0334792_047461_673_8673300033888SoilMTNKEPQMLATLVTASTNAVQVFALIAVILFIIAGIIAFRDKTLWATLICAGLAFLSAAVIYLA
Ga0370484_0223998_354_5183300034125Untreated Peat SoilTLVNASANAVQVFALIAVILFIIAGIIAFLDKTIWATLICAGLAFLSAAVIFLT


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