3300003887: Freshwater pond sediment microbial communities from Middleton WI, HM 5/6 enriched by Humin under anaerobic conditions -HM Sample 3

Overview

Basic Information

• IMG/M Taxon OID: 3300003887
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0113782 | Gp0109338 | Ga0062443
• Sample Name: Freshwater pond sediment microbial communities from Middleton WI, HM 5/6 enriched by Humin under anaerobic conditions -HM Sample 3
• Sequencing Status: Permanent Draft
• Sequencing Center: University of Wisconsin, Madison
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 175020349
• Sequencing Scaffolds: 10
• Novel Protein Genes: 12
• Associated Families: 8

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfuromonadales	1
All Organisms → cellular organisms → Bacteria → Proteobacteria	2
All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales → Cystobacterineae → Anaeromyxobacteraceae → Anaeromyxobacter	2
All Organisms → cellular organisms → Bacteria	2
Not Available	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Gammaproteobacteria incertae sedis → Candidatus Competibacteraceae → unclassified Candidatus Competibacteraceae → Candidatus Competibacteraceae bacterium	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales → Cystobacterineae → Anaeromyxobacteraceae → Anaeromyxobacter → unclassified Anaeromyxobacter → Anaeromyxobacter sp. RBG_16_69_14	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Freshwater Pond Sediment Microbial Communities From Middleton Wi, Enriched By Humin And/Or Glucose Under Anaerobic Conditions
• Type: Environmental
• Taxonomy: Environmental → Aquatic → Freshwater → Sediment → Unclassified → Anaerobic Enrichment Culture → Freshwater Pond Sediment Microbial Communities From Middleton Wi, Enriched By Humin And/Or Glucose Under Anaerobic Conditions

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): aquatic biome → pond → sediment
• Earth Microbiome Project Ontology (EMPO): Free-living → Non-saline → Sediment (non-saline)

Location Information

• Location: Middleton, WI
• Coordinates
  • Lat. (^o): N/A
  • Long. (^o): N/A
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F009620	Metagenome / Metatranscriptome	315	Y
F020864	Metagenome / Metatranscriptome	221	Y
F045136	Metagenome	153	Y
F066898	Metagenome / Metatranscriptome	126	Y
F079531	Metagenome	115	Y
F085790	Metagenome / Metatranscriptome	111	Y
F090578	Metagenome	108	Y
F096266	Metagenome	105	Y

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0062443_1000335	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfuromonadales	850724
Ga0062443_1007219	All Organisms → cellular organisms → Bacteria → Proteobacteria	25268
Ga0062443_1007495	All Organisms → cellular organisms → Bacteria → Proteobacteria	28790
Ga0062443_1010485	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales → Cystobacterineae → Anaeromyxobacteraceae → Anaeromyxobacter	18407
Ga0062443_1023043	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales → Cystobacterineae → Anaeromyxobacteraceae → Anaeromyxobacter	19513
Ga0062443_1031984	All Organisms → cellular organisms → Bacteria	2538
Ga0062443_1035998	All Organisms → cellular organisms → Bacteria	17598
Ga0062443_1043107	Not Available	725
Ga0062443_1075623	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Gammaproteobacteria incertae sedis → Candidatus Competibacteraceae → unclassified Candidatus Competibacteraceae → Candidatus Competibacteraceae bacterium	1571
Ga0062443_1128736	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales → Cystobacterineae → Anaeromyxobacteraceae → Anaeromyxobacter → unclassified Anaeromyxobacter → Anaeromyxobacter sp. RBG_16_69_14	594

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0062443_1000335	Ga0062443_1000335285	F096266	MIDARVVFLLMTSLMLAILVGIGIATYRKGRKQKMEEPKYRMLDED*
Ga0062443_1007219	Ga0062443_100721916	F079531	MIRLARIAVLACALAAAAPASAQYTFTQPGQQPQPVQQLQVWNNVARVNLGVSFYNSTYWNCFYWGWTVSCSGGAWASYIPFTVGPQVDFNLQGMNNISIGFNVMMGTVSGQLTTGQSASASATVWQPTLDYVAKFGPSTQDTVGRFRVGGGMYIGPNSTYGGAFRIGGGASFLNANRLGVGLDLVLEGGSYQGYWIGGLQLLASPEFHF*
Ga0062443_1007495	Ga0062443_100749516	F079531	MRTWIRMAVLAVTLAFAAPAAAQYTFTQPGMQPQPVQQLQLWNNVARVNLGVSFFNSGYYNCNYWYGYYPTYTCGSGSFVSYIPFTVGPQVDFNLGGMNNISVGFNVFLGTATGTLYSGNLSQSVSKSVTIWEPTIDYVAKFGPPSQDTVGRFRVGGGMYIGPNSELGGAFRIGGGASFLNSNRLGIGLDLVLEGGGYNGYWIGGLQLVASPEFHF*
Ga0062443_1010485	Ga0062443_10104851	F066898	MTTQTQNPTTLHFHVSKHGWKDLFVVSFLAIVLGAFVAQISSTPKHSFASPPMASAPLNATSNG*
Ga0062443_1010485	Ga0062443_101048511	F066898	MTNQNQNPTTPHFHVSKHGWKDLFVVSFLAIVLGSFVAQISSAPKHTSASPPMASAPLNATSNG*
Ga0062443_1010485	Ga0062443_10104858	F066898	MTTQTQKTIHFNVSKSTGWKDAFVVTCLAIVLGAFVAQISSTPDHSRTAQPMASVSATAAVNG*
Ga0062443_1023043	Ga0062443_10230432	F090578	MDRCRGASPVLIANAMWDTNPWAPWGLIHVVRDGVATVTETGLWFLLQRHPDAVEADGKGYWLYLDQPYRAERAGDRAFFKLMPAPSRRRGG*
Ga0062443_1031984	Ga0062443_10319842	F009620	VVMALEAWDKFATPGEKFDETEAPSEALDRREMIVLMGESHSGQKQKFLPIICSGNGKFFGFGESEAPTMDXXXXXXXXXXXXXAQLLPTKVPDAAMRDLALTMLKVKGVGSATPGAIPRLHRNRR*
Ga0062443_1035998	Ga0062443_103599812	F079531	MRHTIRAAVLSSMLAVTMPAAAQYTFTQPGQQPQPVQQLELWNNVARVNLGVSFFNSGYYNCNYWGGYYPTYTCGSGSFVSYIPFTVGPQVDFNLAGMNNISVGFNVFLGTATGTLYSGNLSQSVSKSVTIWEPTIDYVAKFGPPSQDTVGRFRVGGGMYIGPNSELGGAFRIGGGASFLNSHRLGIGLDVVLEGGGYNGYWIGGLQLVASPEFHF*
Ga0062443_1043107	Ga0062443_10431072	F020864	MAYKSGADGVTKSGKTKGKNLGDSGPSVGTQKGGKGSKGVTTDAMKSVGRNLARVKNQG*
Ga0062443_1075623	Ga0062443_10756233	F085790	PCVNPCSPNLSLKSDPACIAFRSLSAFSYLGSARHLGAGVAA*
Ga0062443_1128736	Ga0062443_11287362	F045136	RKDAVYRMRVARKTLAAIKRVAAANGEDASEWGRAIIETELRRDLAAIQLRDQLRAAKPGSLTEDEALDLVNEAKRATRAR*