3300003850: Agave microbial communities from Guanajuato, Mexico - Mg.Ma.rz

Overview

Basic Information

• IMG/M Taxon OID: 3300003850
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0053055 | Gp0104147 | Ga0058695
• Sample Name: Agave microbial communities from Guanajuato, Mexico - Mg.Ma.rz
• Sequencing Status: Permanent Draft
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 53850251
• Sequencing Scaffolds: 16
• Novel Protein Genes: 16
• Associated Families: 16

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → unclassified Solirubrobacterales → Solirubrobacterales bacterium URHD0059	1
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Pezizomycotina → leotiomyceta → sordariomyceta → Sordariomycetes → Hypocreomycetidae → Hypocreales	1
All Organisms → cellular organisms → Eukaryota → Opisthokonta	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	3
Not Available	4
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales	3
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → Conexibacteraceae → Conexibacter → Conexibacter woesei	1
All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → eudicotyledons → Gunneridae → Pentapetalae → Caryophyllales → Cactineae → Cactaceae → Opuntioideae → Opuntia → Opuntia streptacantha	1
All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → eudicotyledons → Gunneridae → Pentapetalae → rosids → fabids → Fabales → Fabaceae	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Agave Microbial Communities From California, Usa, And Mexico
• Type: Host-Associated
• Taxonomy: Host-Associated → Plants → Phylloplane → Unclassified → Unclassified → Agave → Agave Microbial Communities From California, Usa, And Mexico

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Host-associated → Plant → Plant surface

Location Information

• Location: Guanajuato, Mexico
• Coordinates
  • Lat. (^o): 21.0936
  • Long. (^o): -100.2988
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002654	Metagenome / Metatranscriptome	539	Y
F004081	Metagenome / Metatranscriptome	454	Y
F005278	Metagenome	406	Y
F034331	Metagenome	175	Y
F036315	Metagenome / Metatranscriptome	170	Y
F036647	Metagenome	169	Y
F037411	Metagenome / Metatranscriptome	168	Y
F049469	Metagenome / Metatranscriptome	146	N
F051783	Metagenome	143	Y
F057456	Metagenome / Metatranscriptome	136	N
F060565	Metagenome	132	Y
F061621	Metagenome	131	Y
F076270	Metagenome	118	Y
F086315	Metagenome / Metatranscriptome	111	Y
F088163	Metagenome	109	Y
F102440	Metagenome	101	Y

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0058695_1000379	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → unclassified Solirubrobacterales → Solirubrobacterales bacterium URHD0059	5815
Ga0058695_1000557	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Pezizomycotina → leotiomyceta → sordariomyceta → Sordariomycetes → Hypocreomycetidae → Hypocreales	4863
Ga0058695_1000837	All Organisms → cellular organisms → Eukaryota → Opisthokonta	3731
Ga0058695_1002841	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1562
Ga0058695_1004900	Not Available	1112
Ga0058695_1005572	Not Available	1030
Ga0058695_1005691	Not Available	1017
Ga0058695_1007440	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales	878
Ga0058695_1009297	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales	784
Ga0058695_1013579	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → Conexibacteraceae → Conexibacter → Conexibacter woesei	647
Ga0058695_1014091	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → eudicotyledons → Gunneridae → Pentapetalae → Caryophyllales → Cactineae → Cactaceae → Opuntioideae → Opuntia → Opuntia streptacantha	635
Ga0058695_1015350	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → eudicotyledons → Gunneridae → Pentapetalae → rosids → fabids → Fabales → Fabaceae	610
Ga0058695_1016680	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	586
Ga0058695_1019452	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales	545
Ga0058695_1019716	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	542
Ga0058695_1022438	Not Available	509

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0058695_1000379	Ga0058695_10003791	F051783	MANVKLHRERARPVPPTYADDLGLLRRLAFEGLYWQDEIEDLLAAIRDGGDLGELSRAGGPHISRYEAMRVELRAVRHPALRRFVVALDEVFANHAMLLHCALDLLAVSWRSERLCEEQSRLGGVGAQGERLARLAAEIRAL
Ga0058695_1000557	Ga0058695_10005577	F057456	IPSVAFPIIQDLSLLHLVILCPAYATVRFVDNQTVRQDLAVELFR*
Ga0058695_1000837	Ga0058695_10008371	F002654	MLDYQTFNDKVVCQKGNSPEQVFKVPKFLLSESKEVFKQYN*
Ga0058695_1002841	Ga0058695_10028412	F086315	MSGLHKRTITVLLIAIATLGLSAAAVYAATTKHHGPKHQRHAYGGRHGQHGFPPSVTRFDLSGYKIQTKYTLGTNTGNTFEQTYTGDMVQGVPVEGPSVGTTFPPFHYVALPIAHKTLYITWVKDDGTIVDAFVMNFKTGVVFDYNPTPGHPESSGTVTILEKGTNRIP*
Ga0058695_1004900	Ga0058695_10049001	F005278	TPSSAFNFRSGQAMYIVAFRISPLATTVNPADMSVSVSPQEYVNYDLDAERKVRKRIEEWQFFRVADKPSEADFVFLVNLDESSIEALAIPFEAYRMHFKEKFDLDALREAAYGRYLIGPLKIATVTRLSDRLVKQVREKITRGSQLK*
Ga0058695_1005572	Ga0058695_10055722	F004081	MEETLELASFRGNDDPSLVAAALACRACLSGEVDWSLLIDDFDAEAICHCRACGYTRAVSLTSEQALRLALQDS*
Ga0058695_1005691	Ga0058695_10056911	F088163	MSLLSVNVMPIYDRFMYCWFVYINMEPSLVVGGLEVKLMIDSRTFVVGAVEEGDRVVNCRNRVGCEAMCGLMSCDMKCMN
Ga0058695_1007440	Ga0058695_10074402	F036315	MARRTLIITAICAVLVGTGVAHAQTGEQLSSSWAQANVCNATQLGARAQLAGDGTKSDLSVRFTAQWLSPNGWEPLGGAATSPWQSAGTAEYTWSQAGWTFSISVPPGHQYQLRAVAELRWSGETVRSETHVTGTCTIGA*
Ga0058695_1009297	Ga0058695_10092972	F076270	MKCCRSTPRCRNCPARKIADQDILRALGIPVEPELPEHLRGVPLSLHKYEPLLRRSYEQRAGATA*
Ga0058695_1013579	Ga0058695_10135791	F049469	FEEGVREVIRRLSGEFAQVCQTAGAEGELRLLAGDRPEEYGVDVLVAHRAGERRRSYRDAAHSGGQRATIAILLLLATMGTAEAADLLIMDEHIAHLDSTNIDHVAALMHALADRVQFVLATPTNAESLRLSWCDLQLAFLPRDPGRAYSPPIRLLSRLGVGDLEDRGVGDLSATETPPPTAAHAVAAPGPSTRQAEEGFVG*
Ga0058695_1014091	Ga0058695_10140911	F060565	MVIIKADLLPEKEEILNEMPILLERVTPSSKVLIDNLEFHTKSRSRFGLLSTTYLIAQRFSLLELQISYLRCPYDIQEKISSHIQE
Ga0058695_1015350	Ga0058695_10153501	F102440	MGRNTGRGKVAYSRISPDPAKAGPTLGVVVVVVVAVGVG*
Ga0058695_1016680	Ga0058695_10166802	F061621	GLVLVAAVFVAFVIGGDAGSGAISAAIVLAFLLVVLLGRRRSDTLDVMSGIGDERGKLLYTRAVAFAGTVMSFVLPGWWLVTIAKGNPDETLSLMCAIFGASFVLAVVVLARRS*
Ga0058695_1019452	Ga0058695_10194522	F036647	AARQVARARAWAALIGFVVGFWLSRRAGLPFPESGARAIVAGIVCRLLAWAALVSLWRQLIPAEIEARRRRAGG*
Ga0058695_1019716	Ga0058695_10197162	F034331	AMDPERRPENLLGVLLDAYWTSLANDPLPALLLTGLLSLGGVLVVLLGHIVGDLVGQLVRFLS*
Ga0058695_1022438	Ga0058695_10224381	F037411	SDATAGGWSLRVLAGPGGGPVGITVPDVTVTKLGGRYHTNAWVRPSAPGTTVTIGLRELRDGRPVPGSNTLGWTVERSGWRRFGAIHMAAMAGSDLTLEIMARDLPPGGYLDVDDVVLHLLKSS*