3300003764: Wastewater treatment Type I Accumulibacter community from EBPR Bioreactor in Madison, WI, USA - Reactor 1_1/23/2012_ DNA

Overview

Basic Information

• IMG/M Taxon OID: 3300003764
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0055735 | Gp0103140 | Ga0056910
• Sample Name: Wastewater treatment Type I Accumulibacter community from EBPR Bioreactor in Madison, WI, USA - Reactor 1_1/23/2012_ DNA
• Sequencing Status: Permanent Draft
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Published?: Y
• Use Policy: Open

Dataset Contents

• Total Genome Size: 141939480
• Sequencing Scaffolds: 5
• Novel Protein Genes: 6
• Associated Families: 3

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1
Not Available	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Pseudomonadales → Pseudomonadaceae → Pseudomonas	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Comamonadaceae → Ottowia → Ottowia oryzae	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Wastewater Treatment Type I Accumulibacter Community From Ebpr Bioreactor In Madison, Wi, Usa
• Type: Engineered
• Taxonomy: Engineered → Wastewater → Nutrient Removal → Biological Phosphorus Removal → Bioreactor → Wastewater Treatment → Wastewater Treatment Type I Accumulibacter Community From Ebpr Bioreactor In Madison, Wi, Usa

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Free-living → Non-saline → Water (non-saline)

Location Information

• Location: Madison, Wisconsin, USA
• Coordinates
  • Lat. (^o): 43.076217
  • Long. (^o): -89.411742
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F054825	Metagenome	139	Y
F069722	Metagenome / Metatranscriptome	123	Y
F097376	Metagenome / Metatranscriptome	104	Y

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0056910_1000329	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	46586
Ga0056910_1001061	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	16308
Ga0056910_1006079	Not Available	2298
Ga0056910_1007557	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Pseudomonadales → Pseudomonadaceae → Pseudomonas	1894
Ga0056910_1023945	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Comamonadaceae → Ottowia → Ottowia oryzae	786

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0056910_1000329	Ga0056910_100032914	F097376	MKKAVTPKNNKTADDVVTQKKQENKSGPVELNLEELKKVSGGLPKGGWRVK*
Ga0056910_1001061	Ga0056910_10010614	F054825	MGRSGPGLTPTPTPERTPHVSTHPATRNLDLWLIDKDDPGVTKPGPGVVYDRAGIGIVFMDERGRDFTFIDTGCALEAWAGQGARLSPALARDLAAALERFADYADGHTAYLLTEADDA*
Ga0056910_1006079	Ga0056910_10060792	F069722	MRVRLTAELDPKAKRRRPDLDKGAAHQKALGHESGAVLRE*
Ga0056910_1006079	Ga0056910_10060793	F069722	MRVRLTAELDPKAKRERPALKKGAAHEKPLGHESGAALQEG*
Ga0056910_1007557	Ga0056910_10075573	F069722	RMRVRLTAELDPKAKRRRPDLDKGAAHEKALGHGSGAALQK*
Ga0056910_1023945	Ga0056910_10239452	F069722	MRVRLTAKLDPKAKRKRPDLDKGAAHEKALGHGSGAVLQE*