Sample 3300003725

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Sample 3300003725

3300003725: Tropical rainforest soil microbial communities from the Amazon Forest, Brazil, analyzing deforestation - Metatranscriptome F II A01 (Metagenome Metatranscriptome)

Overview

Basic Information
IMG/M Taxon OID	3300003725 Open in IMG/M
GOLD Reference (Study \| Sequencing Project \| Analysis Project)	Gs0103008 \| Gp0088347 \| Ga0008087
Sample Name	Tropical rainforest soil microbial communities from the Amazon Forest, Brazil, analyzing deforestation - Metatranscriptome F II A01 (Metagenome Metatranscriptome)
Sequencing Status	Permanent Draft
Sequencing Center	DOE Joint Genome Institute (JGI)
Published?	N
Use Policy	Open

Dataset Contents
Total Genome Size	9526292
Sequencing Scaffolds	21
Novel Protein Genes	22
Associated Families	16

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
Not Available	17
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	2
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Peptostreptococcaceae → Clostridioides → Clostridioides difficile	2

Ecosystem and Geography

Ecosystem Assignment (GOLD)
Name	Tropical Rainforest Soil Microbial Communities From The Amazon Forest, Brazil, For Analyzing Deforestation At Different Spatial Scales
Type	Environmental
Taxonomy	Environmental → Terrestrial → Soil → Unclassified → Tropical Rainforest → Tropical Rainforest Soil → Tropical Rainforest Soil Microbial Communities From The Amazon Forest, Brazil, For Analyzing Deforestation At Different Spatial Scales

Alternative Ecosystem Assignments
Environment Ontology (ENVO)	forest biome → tropical forest → forest soil
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline)

Location Information
Location	Amazon Forest, Brazil
Coordinates	Lat. (^o)	-10.0	Long. (^o)	-62.0	Alt. (m)	N/A	Depth (m)	N/A
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F000396	Metagenome / Metatranscriptome	1185	Y
F001233	Metagenome / Metatranscriptome	741	Y
F001975	Metagenome / Metatranscriptome	609	Y
F002340	Metagenome / Metatranscriptome	569	Y
F005880	Metagenome / Metatranscriptome	387	Y
F021919	Metagenome / Metatranscriptome	216	Y
F022151	Metagenome / Metatranscriptome	215	Y
F026580	Metagenome / Metatranscriptome	197	Y
F029031	Metagenome / Metatranscriptome	189	Y
F033328	Metagenome / Metatranscriptome	177	Y
F044324	Metagenome / Metatranscriptome	154	Y
F049522	Metagenome / Metatranscriptome	146	N
F053640	Metagenome / Metatranscriptome	141	Y
F056191	Metagenome / Metatranscriptome	138	Y
F060086	Metagenome / Metatranscriptome	133	Y
F082737	Metagenome / Metatranscriptome	113	Y

Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
Ga0008087_100240	Not Available	873	Open in IMG/M
Ga0008087_100421	Not Available	579	Open in IMG/M
Ga0008087_100877	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	633	Open in IMG/M
Ga0008087_101160	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	645	Open in IMG/M
Ga0008087_101525	Not Available	504	Open in IMG/M
Ga0008087_101681	Not Available	579	Open in IMG/M
Ga0008087_101859	Not Available	833	Open in IMG/M
Ga0008087_102035	Not Available	607	Open in IMG/M
Ga0008087_102063	Not Available	809	Open in IMG/M
Ga0008087_102138	Not Available	582	Open in IMG/M
Ga0008087_102352	Not Available	572	Open in IMG/M
Ga0008087_102682	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Peptostreptococcaceae → Clostridioides → Clostridioides difficile	710	Open in IMG/M
Ga0008087_103017	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Peptostreptococcaceae → Clostridioides → Clostridioides difficile	1010	Open in IMG/M
Ga0008087_103071	Not Available	580	Open in IMG/M
Ga0008087_103103	Not Available	576	Open in IMG/M
Ga0008087_103633	Not Available	679	Open in IMG/M
Ga0008087_103882	Not Available	529	Open in IMG/M
Ga0008087_105200	Not Available	756	Open in IMG/M
Ga0008087_105515	Not Available	575	Open in IMG/M
Ga0008087_108249	Not Available	561	Open in IMG/M
Ga0008087_108360	Not Available	610	Open in IMG/M

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0008087_100240	Ga0008087_1002402	F056191	LCEARFRHALTAEMSETFPSGGSMHASVKLEGIDGRAPQERVEHVA*
Ga0008087_100421	Ga0008087_1004211	F021919	VPSDPISQPTPRRHATAQSYATRIAGRRPFGSPLPLFKDNGSTLPGSPASFSGWNRHLEATFRSPETTARFQATISRSKLPTCFFDTPPFAGQARSNSGSPTRYGSPRCARDRYRSPVARLAPDAPDPSSNLHSPLGSFEPCRIKAFDPIPGQEVHLLSAPDCPLLPAIDSILLVPMTDHRSRLAKRSAACCS
Ga0008087_100877	Ga0008087_1008771	F001975	EKMPSTTQQELQDQFLSIVRKSQEIALDAIKSMVDTVQTITPKIPAVDVPFADRLPKPQDVVASGYDFAEKLLSSQRKFADEVVKATAPLLPGNGDSK*
Ga0008087_101160	Ga0008087_1011601	F001975	QKKMPSTTQQELQDQFLSIVSKSQEIALDAIKSIVDTAATITPKIPTVDLPFVDRLPKPQDVVASGYDFAEKLLSSQRTFADEVVKATAPLLPGNSDTK*
Ga0008087_101525	Ga0008087_1015251	F060086	AGQEDPFELDSNLLLSSGRHGEDRKRQYLDDHETPLLDDLADLLYLALPCLV*
Ga0008087_101681	Ga0008087_1016811	F082737	VPSDPRRQLAPQPACQV*ACHIQHAGRLFRLAPRPRCFSGCASLLGATPASLPVRSQNLEAAFHSPTTTSLLPDDRGGVRVPALPLRLCDTVSVSPVRSDLHPRPVSRTSWDFCNQNPLLPDPAPLLPAALNRRYPSGFLAPPDQSTRSRWPTGNLPTATPDFPSLPAGGLIRYQPADHRSSFATLLSARCSV
Ga0008087_101859	Ga0008087_1018591	F026580	VSFELEPIAVTQRVLGCYCASARANNSGGLYQEVSQTKDAERRDKLSIRTGEDTRSRQDP
Ga0008087_102035	Ga0008087_1020351	F033328	NRGRRKTNARMSPKASWIIPGDWGKVEPGWLTQPLLRYDRKVETAEA*
Ga0008087_102063	Ga0008087_1020631	F001233	LRWPVAVEILPRILSRIIPGDWGKDESGWLVHPLINRIARSGSGGRIHQFLWRRSRAVSNAKRNCAIRSD*
Ga0008087_102138	Ga0008087_1021381	F000396	VPSDLISRPNSPPACIGTKLCSRKRRMPSLWLPAAFFRKPRIKASRLTCQLFQPEPVSRSGLSLSRNDCLSPSHHSEVKAPDLLLRYRTVRLPSPFGYRLPHAFRFAPARAESQSITRCPTPVRHYQFFLGSPLPFRVFRTPPDQSVQPDSKPENSPAKRPRLPFTPQRQLYFISFDTGSPLQTR*
Ga0008087_102352	Ga0008087_1023521	F022151	LDNRPNGTERVRNIDPLLVLLKTAGSGERGAIGRFDSVSLSAGIWIDALIGRGLKALNGSEGSKNGRGREEGTGQRV*
Ga0008087_102682	Ga0008087_1026821	F056191	LCEARVRHVLTAEMSETFPSGGSMHASVKLEGIDGRAPQERVEHVA
Ga0008087_103017	Ga0008087_1030171	F056191	MKVYEARVRHELTVEIFKSLSSWGSMHASVKLEGIDGRAPQERVEHVA*
Ga0008087_103071	Ga0008087_1030711	F005880	QVTVWQLALRPACTVRTWHPKRKKREPFAPRRWRWPTADQCAGARLLSIPVEVCFSMRPFALQHRGLASRPIPVTASTFPVYIFETIRKSDPARSAPHSHTRSVF**PCGHDPRTNPVAKSDLRTHGSLSDFGSPPGSLEPSGSKPSTRLRTTKLTLASRPIFLHSPQRDNRFICHSALRIIVPDPLLPARL
Ga0008087_103103	Ga0008087_1031031	F029031	GTANLVSGSEPGTLIRWQTYKTERWRGAKGNRAEHKGELLKR*
Ga0008087_103633	Ga0008087_1036331	F053640	TAGIIPGDRGKAGDNWCRPPLHVAKADERHISPVPLAGVVSGQSTHESGTEPQGAIRNRVERSQAHGAFRPVRRRSYPRGLWLLLRRPERSHVSRRDDPAKRPGSPHERGAQRRRDGGE*
Ga0008087_103882	Ga0008087_1038821	F049522	SLLGRSLLMTRHTADHLLAKTCRPTRAGLRLLRSCWALVCHRRAVLSAGSTVECIPRKGEPVAQGPCPFGPSLSTRFGWSVLTTVQKHVRVPTHSDLAHRHPQSGSASACLAPLASPMPLGVRQQHEGGAVSHAP*
Ga0008087_105200	Ga0008087_1052001	F044324	RMVGLAGEAAQAEEPKAGKLEREDHLGIDGLAGDGDTLWIIAAGHTQHRREKIVNGAGGNDIGEVIRAEPEGAGTHEGTRTVVGGNTTAVVADPGSDESFEVDASSAGARGNSGRTAAPTARKHRIVMSDRG*
Ga0008087_105515	Ga0008087_1055151	F026580	RVVSKREKGTERRGAIRNRSKPNQVTRAGFESGWIAVTQRVNGCYCASARESDSGGPREGVSQRKNAERRNKVSARPGKDTRSRQDP*
Ga0008087_108249	Ga0008087_1082491	F056191	LCEARVRHVLTAEMFETIPSGGSMHASVKLEGIDGRAPQERV
Ga0008087_108360	Ga0008087_1083602	F002340	LIMKTILSALVALSVIAGVAGTASAFDAKSFYEQVDRNHN*
Ga0008087_108360	Ga0008087_1083603	F002340	LIMKTILSALVALSVIAGVAGTASALDAKTFYEQVDRDHN*

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