3300003718: Marine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - ESP_116LU_22_RNA (Metagenome Metatranscriptome)

Overview

Basic Information

• IMG/M Taxon OID: 3300003718
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0046785 | Gp0088396 | Ga0008277
• Sample Name: Marine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - ESP_116LU_22_RNA (Metagenome Metatranscriptome)
• Sequencing Status: Permanent Draft
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 18639623
• Sequencing Scaffolds: 11
• Novel Protein Genes: 13
• Associated Families: 13

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Eukaryota → Cryptophyceae	2
All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora → Intramacronucleata → Spirotrichea → Oligotrichia → Strombidiidae → Strombidium → Strombidium inclinatum	3
All Organisms → Viruses → unclassified viruses → unclassified DNA viruses → unclassified dsDNA viruses → Prokaryotic dsDNA virus sp.	1
Not Available	1
All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora → Intramacronucleata → Spirotrichea → Oligotrichia → Strombidiidae → Strombidium	1
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Acidimicrobiia → unclassified Acidimicrobiia → Acidimicrobiia bacterium	1
All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora → Intramacronucleata → Spirotrichea	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Marine Microbial Communities From Expanding Oxygen Minimum Zones In The Northeastern Subarctic Pacific Ocean
• Type: Environmental
• Taxonomy: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From Expanding Oxygen Minimum Zones In The Northeastern Subarctic Pacific Ocean

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): marine biome → coastal inlet → sea water
• Earth Microbiome Project Ontology (EMPO): Free-living → Saline → Water (saline)

Location Information

• Location: Saanich Inlet, British Columbia, Canada
• Coordinates
  • Lat. (^o): 48.6
  • Long. (^o): -123.5
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000155	Metagenome / Metatranscriptome	1877	Y
F001099	Metagenome / Metatranscriptome	778	Y
F002698	Metagenome / Metatranscriptome	536	Y
F009292	Metagenome / Metatranscriptome	320	Y
F011850	Metagenome / Metatranscriptome	286	Y
F024200	Metagenome / Metatranscriptome	207	Y
F039672	Metagenome / Metatranscriptome	163	N
F068876	Metagenome / Metatranscriptome	124	Y
F076148	Metagenome / Metatranscriptome	118	Y
F081370	Metagenome / Metatranscriptome	114	Y

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0008277_101797	All Organisms → cellular organisms → Eukaryota → Cryptophyceae	961
Ga0008277_102283	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora → Intramacronucleata → Spirotrichea → Oligotrichia → Strombidiidae → Strombidium → Strombidium inclinatum	749
Ga0008277_105478	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora → Intramacronucleata → Spirotrichea → Oligotrichia → Strombidiidae → Strombidium → Strombidium inclinatum	884
Ga0008277_107483	All Organisms → Viruses → unclassified viruses → unclassified DNA viruses → unclassified dsDNA viruses → Prokaryotic dsDNA virus sp.	1635
Ga0008277_110396	Not Available	673
Ga0008277_110705	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora → Intramacronucleata → Spirotrichea → Oligotrichia → Strombidiidae → Strombidium	576
Ga0008277_110842	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	837
Ga0008277_111705	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Acidimicrobiia → unclassified Acidimicrobiia → Acidimicrobiia bacterium	794
Ga0008277_112700	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora → Intramacronucleata → Spirotrichea	783
Ga0008277_122496	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora → Intramacronucleata → Spirotrichea → Oligotrichia → Strombidiidae → Strombidium → Strombidium inclinatum	628

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0008277_101797	Ga0008277_1017971	F011850	SMFKTSAVILAGLMGAEAFAPSGVAPTSSRLALRASTARKSGLVGPKMMDASSIADGVQLIAANGVANVPFVDEVTGEGLGFTSPLSHFESVIGLWVLFSLPVWSAAYKKVGGDTPDWFGVSQVTEEAPGIGAFPRYAPAYDGPSFSEGLTYVLSFLWKPPILIAWKPRADLDRAAMDPARETVVSSIYKGFGGALDKTAVYDEEDQLLILSDIETFPETELGRRREKIAEASGLYSGNPSFGKSLIEYSEETKKGKKDFGTVTISAAELAALRAEAAKKK*
Ga0008277_102283	Ga0008277_1022831	F039672	MAPDLTSKRVGQRLPECSAEVVLSTLLFEEIELLEGLQSVDSKDKSVVSSHTKTGHEVLNLDVVEDHSGDVVGVLLSHGLVGVGLNLGGDSVSVSEDGGGDLGAEGSGVVVSLLLGVGDSEREVLGDLVEVTLDGGEELSLWVLLNLSGFGSSRLVSSDVLIGNGISSDIWESSNVLNRVWVMVVSLDGS
Ga0008277_103006	Ga0008277_1030061	F000155	MKFAAIAVVATVSANTYDFMGEDELLAQLSTTLSSAQRSEARGDGDAAVAKTAAIKNIQKSLTARILKRLDDGQPLVEVARKMKAIEGMQP*
Ga0008277_105478	Ga0008277_1054781	F009292	LDQLLQLTLTSLPPRPIHSMPSDNPPMSQSMTVKAITLKVNPTYSQDVVESVTLKSFRKVVGYDTFNSILKGARDEKKDISDHYNVTLTVMVKRIPESTATHVNDAFAGGKSLKDVLDKGFPYDDGDNSIDDQTANWSKKNHKGQIQVGKLNGENVTKSALVNLIKDTDAPITQALVQLDSEKSDADGLFKLMDANVTRGNLKNLVTDKPAPITVALAQKSDADGLFKLMDANVTRGNLKNLVTDKPAPITVAL*
Ga0008277_106318	Ga0008277_1063181	F076148	KYTIALAALLGLASFQDVQAITLFNTAGQAIYMEDSESSSSSSSEAANVQLEGDDEEVDHSGEFFHAGQHEMLGGGGYDRVTPANFAADSDDIFMRSMIEQYALEQKTKEGNPSGKFWMNEATTRAAAREVLETHKGLKGAALDKYLNTYFAKAWGHFDVNRSGLVEVIKMPQFMRFLASDQYMSLQP*
Ga0008277_107483	Ga0008277_1074832	F104958	MAGFNVTALDNFNNELAGELLVKSVIAGSTTEFVTVKEGIKYKEPINLQEIDLVIQDGNTCVSTPSGSVSYTQRDITVCTRTSYDGLCLKDLDTKYIGLLGPQGSYPETYAFVEEYASQLVANFQKKNDQFIWTATTEAGDCSVGLNTLLASGSGATFVSQSAPDSSNIGNQIDEQLETLAVDVQDRDDLTTFLSVANFRKYIVWLRTQNNFFFDPSAVENRGSLLSMKHPYANLTVVGTVGLQGSNRIVTGPARQIVVGTDLISDLDNFQLWYDINGDQLKHRIVTKLGVQVAYPEFWVTNNL*
Ga0008277_110396	Ga0008277_1103961	F101139	KKLKIMLNLNNKKELILEVLNSYENLTIEQLESLINNTNLNGVSFVSVKGYSSEKSNNTEVANQVINIGASYKNMLKKDTNIYANFDLSSVDVDAFNYDTINTNGLTLNEYKKAVKDSLEIALNELSQPKKKKVSNDIYFNNALAFNTNTRKLSLLGQTINKTIEKKGTFKVVKSAPKTIAKKLIERKAKGKTQTLRRFAIDNLVGSVKVSGEVVEIG*
Ga0008277_110705	Ga0008277_1107051	F001099	AVSAVKLGDDDWFAARENGTGPLDKKYERVPPEHFAAGTDDLFMRSMIMNYALEGKDKDGAPTGVFVMNEAQTKAAAAEVLASHKGIKGGELSSYMETYFPRTWAHYDVNKTGFIGVEAVPMFMRFLASDQTLNLQ*
Ga0008277_110842	Ga0008277_1108421	F068876	NKQTEGLVAIKIFVKAGEGQARIMAIADILDVSLQNKKLTNGTELGTSYLNVEGLDPSNKALYSARYLIPFKLYGE*
Ga0008277_111705	Ga0008277_1117051	F002698	QIDRIDQHALTEFINRVKLIDSFIYMKIKEGQIQSTVYLPQRDAVKHHSIQADTIFQVSEWPDTDKEMKIAFFEGNKVIEAIKHFEHDAIKGEFEFIENDEEFVASTLRIFNDELEITLSCSEPSLGFKDLSADQRDAIFARSDSKFDFTLDTHSIGKVKNLFSLDKDETFGINSDVQGINVNGKSFNVVLTPDTSGNGNVTVYKKYLNLLDKEEQTVYVSDSKVVFESNDSHTLLTISTCQTA*
Ga0008277_112700	Ga0008277_1127001	F081370	MDNSLSVVPLLEEITSILLMAWMNLGEVDHLLVELSLLETLVYEEIILLMHGSVASLASSLENLESSSESGGVVGVPGDLGWPVRVTVMHTNGVDLLFITLDTVRGTNVVSEKPSFGFTVSGEEWVRGQGLDNRSSQSADFSLLFIER
Ga0008277_122496	Ga0008277_1224961	F024200	TIIALIGAVAASQVEYAPIADETLVQTSQEAPCVYLDETVGELEYQMEMFSRTLDPRHWTNVQNIHSALVKKGTKNLPKLQVNTWGLYDKAFSFPRIRRYNFVCENMDMLEHFQDNLNTNISNTIHMENFLRVANTVHTNLLTKYHDGEFVDPALYDPKDEENK*
Ga0008277_125018	Ga0008277_1250181	F097384	IRKHNYQTQVRLFTSLDDATVRAVLWDQSVHCLVWPPLVRYPGLSETAKTDLRAYAAAGNNVVFLGNYVAVQFMNDVFGFQLTDDYQNGPYYRNDRNVRNTPFQYLPSRVEQASIETYAVKSRSLPPGGKSMIDTLGATVAFVVRYDLGTVCYIGYNYNTPFHADQWTRVLHSAIDM*