3300003714: Marine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - ESP_59LU_5_RNA (Metagenome Metatranscriptome)

Overview

Basic Information

• IMG/M Taxon OID: 3300003714
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0046785 | Gp0088391 | Ga0008272
• Sample Name: Marine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - ESP_59LU_5_RNA (Metagenome Metatranscriptome)
• Sequencing Status: Permanent Draft
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 8238042
• Sequencing Scaffolds: 13
• Novel Protein Genes: 15
• Associated Families: 12

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora → Intramacronucleata → Spirotrichea → Stichotrichia → Urostylida → Pseudourostylidae → Pseudourostyla → Pseudourostyla cristata	3
Not Available	2
All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora → Intramacronucleata → Spirotrichea → Oligotrichia → Strombidiidae → Strombidium	4
All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora → Intramacronucleata → Spirotrichea → Oligotrichia → Strombidiidae → Strombidium → Strombidium inclinatum	2
All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora → Intramacronucleata → Spirotrichea → Hypotrichia → Euplotida → Euplotidae	1
All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora → Intramacronucleata → Spirotrichea → Oligotrichia → Strombidiidae → Strombidium → Strombidium rassoulzadegani	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Marine Microbial Communities From Expanding Oxygen Minimum Zones In The Northeastern Subarctic Pacific Ocean
• Type: Environmental
• Taxonomy: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From Expanding Oxygen Minimum Zones In The Northeastern Subarctic Pacific Ocean

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): marine biome → coastal inlet → sea water
• Earth Microbiome Project Ontology (EMPO): Free-living → Saline → Water (saline)

Location Information

• Location: Saanich Inlet, British Columbia, Canada
• Coordinates
  • Lat. (^o): 48.6
  • Long. (^o): -123.5
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000155	Metagenome / Metatranscriptome	1877	Y
F000237	Metagenome / Metatranscriptome	1498	Y
F001099	Metagenome / Metatranscriptome	778	Y
F001583	Metagenome / Metatranscriptome	668	Y
F002870	Metagenome / Metatranscriptome	524	Y
F003081	Metagenome / Metatranscriptome	508	Y
F027881	Metagenome / Metatranscriptome	193	Y
F028311	Metagenome / Metatranscriptome	192	Y
F030104	Metagenome / Metatranscriptome	186	Y
F039672	Metagenome / Metatranscriptome	163	N
F056191	Metagenome / Metatranscriptome	138	Y
F080907	Metagenome / Metatranscriptome	114	Y

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0008272_100193	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora → Intramacronucleata → Spirotrichea → Stichotrichia → Urostylida → Pseudourostylidae → Pseudourostyla → Pseudourostyla cristata	1394
Ga0008272_100800	Not Available	972
Ga0008272_102246	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora → Intramacronucleata → Spirotrichea → Oligotrichia → Strombidiidae → Strombidium	604
Ga0008272_102313	Not Available	507
Ga0008272_102530	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora → Intramacronucleata → Spirotrichea → Oligotrichia → Strombidiidae → Strombidium	683
Ga0008272_104282	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora → Intramacronucleata → Spirotrichea → Oligotrichia → Strombidiidae → Strombidium → Strombidium inclinatum	689
Ga0008272_104944	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora → Intramacronucleata → Spirotrichea → Hypotrichia → Euplotida → Euplotidae	933
Ga0008272_106214	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora → Intramacronucleata → Spirotrichea → Oligotrichia → Strombidiidae → Strombidium	1215
Ga0008272_106436	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora → Intramacronucleata → Spirotrichea → Oligotrichia → Strombidiidae → Strombidium → Strombidium rassoulzadegani	627
Ga0008272_108878	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora → Intramacronucleata → Spirotrichea → Stichotrichia → Urostylida → Pseudourostylidae → Pseudourostyla → Pseudourostyla cristata	542
Ga0008272_108884	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora → Intramacronucleata → Spirotrichea → Stichotrichia → Urostylida → Pseudourostylidae → Pseudourostyla → Pseudourostyla cristata	890
Ga0008272_109013	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora → Intramacronucleata → Spirotrichea → Oligotrichia → Strombidiidae → Strombidium → Strombidium inclinatum	699
Ga0008272_111693	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora → Intramacronucleata → Spirotrichea → Oligotrichia → Strombidiidae → Strombidium	561

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0008272_100193	Ga0008272_1001932	F003081	MFNDTRFGAEVFYMHVRGVDTLMVLSYMHILKKIYLKNYVTSESDG*
Ga0008272_100800	Ga0008272_1008001	F027881	KFFVMSLTVARSERVRGVLTHASFTRIKFNLSSARVSNAL*
Ga0008272_102246	Ga0008272_1022461	F001099	KFTASIFAIAAVSAVKLGDDDWFAARENGTGPLDKKYERVPPEHFAAGTDDLFMRSMIMNYALEGKDKDGAPTGVFVMNEAQTKAAAAEVLASHKGIKGGELSSYMETYFPRTWAHYDVNKTGFIGVEAVPMFMRFLASDQTLNLQ*
Ga0008272_102313	Ga0008272_1023131	F056191	LCEARVRHALTAEMFKTLPSWGSMHASVKLEGIDGRAPQERVEHVA
Ga0008272_102530	Ga0008272_1025301	F002870	NKFAKMTLAAMAVEAASVESAQSLVQQALLNVESGSAAAMHLENAMSAMSETKFTDAEILSRNSQNVNVPIDEKRALTLKVSPTYTLDSVNSVTLKSFRKIVGYDTFESIRKKTRGESKDTSDYYNVTVSMMIQRKPVEAAAAPTADPYAPNGAATLASTLDKGFPYDD*
Ga0008272_102574	Ga0008272_1025741	F000155	FAVAALATAQAAKFDSMTEDELLAQLSTHLESAMKSETMGDSDAAVAKTAAIKNIQKALTARILKRLDDGQPLVEVARKMKAIEGMQP*
Ga0008272_104282	Ga0008272_1042821	F039672	MAPDLTSIRVGQRLPECSAEIVLSTLLFEEVELLKGLQSVDGKDKSIVGGHTETRHVVLNLDVVEDHSGDVVGVLLSHGLVGVGLNLGGDSVSVSEDGGGDLGAEGSGVVVSLLLGVGDSEREVLGDLVEVTLDGGEELSLWVLLNLSGFGSSRLVSSDVLIGNGISSDIWESS
Ga0008272_104944	Ga0008272_1049441	F028311	AVKKKSEKRIKKEAYWTRLQVVAQKYNNVLFVDADNVSSKQIAKDQS*
Ga0008272_106214	Ga0008272_1062142	F030104	MSREIRVQLEAVLQTILFILLYWTMAIMAFDDDQEEVIEFMDTSFFNFFSLIIFYLCLKHSIHYFAFLEASVVEGRTVGFIAKQFFRDFLNTFSLILRFYTLLFRMNVYDNLDDFFDSYYIFVGDFDDDEYLNELFLSIHGTLLFTLDNHDDRSFLLEDENDFSNDFFYTYFVV*
Ga0008272_106436	Ga0008272_1064362	F080907	MCAPASNMLFATGMNGDEDLGEDITMKGNKFHFNQNLVQSKFATGMNGDEDLGEDITMKGNKFHFNQNLAQFATGMNGDEDLGEDITMKGNKFHFNQNLVQSKFATGMNGDEDLGEDITMKGNKFHFNQNLAQFATGMNGDEDLGEDITMKGNKFHFN
Ga0008272_106876	Ga0008272_1068761	F000237	ESDG*LLGGYAFL*FQYIIALGISLSASHLSDLTLTIIANIF*SLFNNIYKTYYIIFTNKHLNTDQLTRLMILHYFTP*YYLYLIQLHVLFCHES*DTDSGETTYEDKSGSYVS*FYDCFLKEIQDG*Y*VLFVFVYFFLHHFNGSTVNFFFFER*NIAELDEIRFYGVAPH*YFRPLMGILILAPTHYEGLM*FAVFFGLLAGLPIFYNFYNTFSDYVSTIPMQNSILQTSAFIVFMMSMYCAASMLPCGRYYYDPEGGYVGNP*VKFS*QYMFVYLG*ILHHLDLFDHYIFQFSQTFN
Ga0008272_108878	Ga0008272_1088781	F001583	LLNFTYKTYYILFTNKHLNTDQLTRLMMFHYFTP*YYLYLIQMHVMFCHES*DTDSGENVIEDKSGTYVS*FYDAFLKEIQDAWY*TQFVFLYFAMHHFAPSTVNYHFFER*NISELEEIRFYGVAPH*YFRPLMGLLTIAPTHYEGLA*LVS*FLLLASLPMINHFYNIHNHYIPVIPM
Ga0008272_108884	Ga0008272_1088841	F001583	PGLVVELREEMFNDTRFGAEVFYMHVRGVDTLMVLSYMHILKKIFLKNYITSESDG*MLGGYAFFWFHYIIILGISLSASHLSDLTLTIIANVF*SLFNNIYKTYYIIFTNKHLNVDQLTRLMILHYFTP*YYLYLVKLHVLFCHES*DTDSGENTYEDKSGSYVS*FYDAFLKEIQDA*Y*TLYVFVYFFLHHFNGATVNYFFFER*NIAELDEIRFYGVAPH*YFRPLMGILVISPTHYEGLM*MGLFFILLAFLPIFYNFYNVYHEYVSTIPMQNSLLQTSFFIVFMMSLYCT
Ga0008272_109013	Ga0008272_1090131	F039672	MSLKSKVGTRTFTSKRVVRRLPECSAEVVLSTLLFEEIELLEGLQSVDSEDKRIVGGHTKTVHEFLELDVIEDHSGDVVGVHFSHRLVGLGLNLSGDTVGVSEDSSSDLGAEGSGVVVSLGLGVGDSEREILGDLIKVGLDGGEELSLWVLLNLSSLSSGGLVGSDVLVGNGISSNIWESRNVLNRVWVMVVSLDG
Ga0008272_111693	Ga0008272_1116931	F002870	ALLNVEAGSAAAMHLENAMSAMTQTGFTDAEVLEQHSQKVNVPIDEKRALTLKVSPTYTLDSVNSVTLKSFRKIVGYDTFESIRKKSRGESKDTSDYYNVTVSMMIQRKPVEAAAAPAADPYAPNGAASLASTLDKGFPYDD*