Sample 3300003701

Basic Information
IMG/M Taxon OID	3300003701 Open in IMG/M
GOLD Reference (Study \| Sequencing Project \| Analysis Project)	Gs0046785 \| Gp0055325 \| Ga0005233
Sample Name	Marine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - MetaT SI072_150m_A (Metagenome Metatranscriptome)
Sequencing Status	Permanent Draft
Sequencing Center	DOE Joint Genome Institute (JGI)
Published?	Y
Use Policy	Open

Basic Information

IMG/M Taxon OID

GOLD Reference
(Study | Sequencing Project | Analysis Project)

Sample Name

Marine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - MetaT SI072_150m_A (Metagenome Metatranscriptome)

Sequencing Status

Permanent Draft

Sequencing Center

DOE Joint Genome Institute (JGI)

Published?

Use Policy

Open

Dataset Contents
Total Genome Size	58024383
Sequencing Scaffolds	20
Novel Protein Genes	29
Associated Families	20

Dataset Contents

Total Genome Size

58024383

Sequencing Scaffolds

Novel Protein Genes

Associated Families

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → Viruses → Predicted Viral	2
Not Available	10
All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora → Intramacronucleata → Spirotrichea → Oligotrichia → Strombidiidae → Strombidium → Strombidium inclinatum	2
All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora → Intramacronucleata → Spirotrichea → Oligotrichia → Strombidiidae → Strombidium → Strombidium rassoulzadegani	2
All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora → Intramacronucleata → Spirotrichea → Stichotrichia → Sporadotrichida → Oxytrichidae	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae → Streptomyces → Streptomyces thermolilacinus	1
All Organisms → cellular organisms → Eukaryota → Sar	1
All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora → Intramacronucleata → Spirotrichea → Oligotrichia → Strombidiidae → Strombidium	1

Dataset Phylogeny

Taxonomy Groups

Number of Scaffolds

All Organisms → Viruses → Predicted Viral

Not Available

All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora → Intramacronucleata → Spirotrichea → Oligotrichia → Strombidiidae → Strombidium → Strombidium inclinatum

All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora → Intramacronucleata → Spirotrichea → Oligotrichia → Strombidiidae → Strombidium → Strombidium rassoulzadegani

All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora → Intramacronucleata → Spirotrichea → Stichotrichia → Sporadotrichida → Oxytrichidae

All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae → Streptomyces → Streptomyces thermolilacinus

All Organisms → cellular organisms → Eukaryota → Sar

All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora → Intramacronucleata → Spirotrichea → Oligotrichia → Strombidiidae → Strombidium

Ecosystem Assignment (GOLD)
Name	Marine Microbial Communities From Expanding Oxygen Minimum Zones In The Northeastern Subarctic Pacific Ocean
Type	Environmental
Taxonomy	Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From Expanding Oxygen Minimum Zones In The Northeastern Subarctic Pacific Ocean

Ecosystem Assignment (GOLD)

Name

Marine Microbial Communities From Expanding Oxygen Minimum Zones In The Northeastern Subarctic Pacific Ocean

Type

Environmental

Taxonomy

Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From Expanding Oxygen Minimum Zones In The Northeastern Subarctic Pacific Ocean

Alternative Ecosystem Assignments
Environment Ontology (ENVO)	marine biome → coastal inlet → sea water
Earth Microbiome Project Ontology (EMPO)	Free-living → Saline → Water (saline)

Alternative Ecosystem Assignments

Environment Ontology (ENVO)

marine biome → coastal inlet → sea water

Earth Microbiome Project Ontology (EMPO)

Free-living → Saline → Water (saline)

Location Information
Location	British Columbia, Canada
Coordinates	Lat. (^o)	48.7299	Long. (^o)	-123.5699	Alt. (m)	N/A	Depth (m)	N/A
Location on Map

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Location Information

Location

British Columbia, Canada

Coordinates

Lat. (^o)

48.7299

Long. (^o)

-123.5699

Alt. (m)

N/A

Depth (m)

N/A

Location on Map

Zoom:

Family	Category	Number of Sequences	3D Structure?
F000055	Metagenome / Metatranscriptome	3096	Y
F000075	Metagenome / Metatranscriptome	2622	Y
F000155	Metagenome / Metatranscriptome	1877	Y
F000787	Metagenome / Metatranscriptome	891	Y
F001219	Metagenome / Metatranscriptome	744	Y
F001478	Metagenome / Metatranscriptome	687	Y
F007606	Metagenome / Metatranscriptome	348	Y
F009426	Metagenome / Metatranscriptome	318	Y
F012720	Metagenome / Metatranscriptome	278	Y
F015154	Metagenome / Metatranscriptome	257	Y
F016006	Metagenome / Metatranscriptome	250	Y
F031514	Metagenome / Metatranscriptome	182	Y
F042367	Metagenome / Metatranscriptome	158	Y
F063325	Metatranscriptome	129	N
F068904	Metagenome / Metatranscriptome	124	Y
F072409	Metagenome / Metatranscriptome	121	Y
F077771	Metagenome / Metatranscriptome	117	N
F088935	Metagenome / Metatranscriptome	109	N
F096688	Metagenome / Metatranscriptome	104	N
F102126	Metagenome / Metatranscriptome	102	N

Family

Scaffold	Taxonomy	Length	IMG/M Link
Ga0005233J53080_1006561	All Organisms → Viruses → Predicted Viral	2721	Open in IMG/M
Ga0005233J53080_1006956	All Organisms → Viruses → Predicted Viral	1335	Open in IMG/M
Ga0005233J53080_1007078	Not Available	522	Open in IMG/M
Ga0005233J53080_1010083	Not Available	970	Open in IMG/M
Ga0005233J53080_1014612	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora → Intramacronucleata → Spirotrichea → Oligotrichia → Strombidiidae → Strombidium → Strombidium inclinatum	2643	Open in IMG/M
Ga0005233J53080_1015395	Not Available	1193	Open in IMG/M
Ga0005233J53080_1022365	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora → Intramacronucleata → Spirotrichea → Oligotrichia → Strombidiidae → Strombidium → Strombidium rassoulzadegani	503	Open in IMG/M
Ga0005233J53080_1024658	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora → Intramacronucleata → Spirotrichea → Oligotrichia → Strombidiidae → Strombidium → Strombidium inclinatum	513	Open in IMG/M
Ga0005233J53080_1028257	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora → Intramacronucleata → Spirotrichea → Oligotrichia → Strombidiidae → Strombidium → Strombidium rassoulzadegani	793	Open in IMG/M
Ga0005233J53080_1031023	Not Available	613	Open in IMG/M
Ga0005233J53080_1033165	Not Available	641	Open in IMG/M
Ga0005233J53080_1035323	Not Available	715	Open in IMG/M
Ga0005233J53080_1036503	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora → Intramacronucleata → Spirotrichea → Stichotrichia → Sporadotrichida → Oxytrichidae	787	Open in IMG/M
Ga0005233J53080_1040738	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae → Streptomyces → Streptomyces thermolilacinus	634	Open in IMG/M
Ga0005233J53080_1043796	Not Available	511	Open in IMG/M
Ga0005233J53080_1046038	Not Available	641	Open in IMG/M
Ga0005233J53080_1048141	All Organisms → cellular organisms → Eukaryota → Sar	556	Open in IMG/M
Ga0005233J53080_1049158	Not Available	538	Open in IMG/M
Ga0005233J53080_1053004	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora → Intramacronucleata → Spirotrichea → Oligotrichia → Strombidiidae → Strombidium	557	Open in IMG/M
Ga0005233J53080_1055744	Not Available	669	Open in IMG/M

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0005233J53080_1002667	Ga0005233J53080_10026671	F000155	LTTMKFTALIAVAAASKYDQMNEDELLVSLESTLSSAQRSEARGDGDAAVAKTAAIKNIQKALTARILKRLDDGQPLVEVARKMKAIEGMQP*
Ga0005233J53080_1002838	Ga0005233J53080_10028381	F000155	INKLFYTAMKFLAFAAVVAANRYDNMTEDDLLVNLESTLSSALSSEARGDGDAAVAKTAAIKNIQKALTARILKRLDDGQPLVEVARKMKAIEGMQP*
Ga0005233J53080_1003506	Ga0005233J53080_10035061	F000075	KNFTFLQMKFAACLIATVAANRYESMNEDDLLVNLESTLSSALSSEARGDADAAVAKTAAIKNIQKALTARILKRLDDGQPLVEVARKMKAIEGMQPQINDMERRLGIMQSVEPVLENAIKTLQKVVDVRGMGKK*
Ga0005233J53080_1004050	Ga0005233J53080_10040501	F000155	INLKMKFAAALIATVSANTYDFMGEDDLLSQLESTLSSAQMSEARGDADAAVAKTAAIKNIQKALTARILKRLDDGQPLVEVARKMKAIEGMQP*
Ga0005233J53080_1004263	Ga0005233J53080_10042631	F000155	FTLLVAAVAANQFDNMNEDELLVNLESTLSSALSSEARGDGDAAVAKTAAIKNIQKALTARILKRLDDGQPLVEVARKMKAIEGMQP*
Ga0005233J53080_1004839	Ga0005233J53080_10048391	F000155	EMKFCALIAAVAANQYDSMNEDELLVSLESTLSSAQRSEARGDGDAAVAKTAAIKNIQKALTARILKRLDDGQPLVEVARKMKAIEGMQP*
Ga0005233J53080_1006561	Ga0005233J53080_10065612	F102126	MGKKGKDIQRGQDAKRLVEDPLYKEAFEDTKNHLNEMLLQTKISEETERDRIYITIKSLGLVDEHIRSVLTTGKLAEGQDEFY*
Ga0005233J53080_1006956	Ga0005233J53080_10069561	F001478	MDVQGNVDGENKNIQVFNKHGKLNQQWDVVYTDEWKGEPGKGELNEDFGLYVERPFYIVSQMAAHRYLDLINNRNFVIKTPNGRNTQIWYFHQQSLTIRTKLNNQSWDIKSAGKTNEMQIWSTNSGWFQVFKYADEHFLNF*
Ga0005233J53080_1006956	Ga0005233J53080_10069562	F001478	MDVHGGQDDESRNVIVWNRHKGLNQQWDIVYADEYPEEPKKGEMNEFFGLYVERPFYIVSKLGQHRYLDLLNNRNMVIKTQNGRKTQMWWFDQKSLTIRTKLNNQSFDIKSAGKTNE
Ga0005233J53080_1007078	Ga0005233J53080_10070781	F096688	EIVFYAIDRMSLKDKEGEFMRIIKGLAVVGYASIMLLVLTGGRSANEAEFNAGHQACDAQFNMDAMQAFEMDPSEPFVQCHVAVNEAYPAAWNNWRRQNARTRGIEAAGAGKRGRSC*
Ga0005233J53080_1010083	Ga0005233J53080_10100831	F001478	ELRAISTCNSRWWNLFRYKENAFVTNDKGKVMDVAGGQDSESRNVIMYKRHGKINQQWDIVYADEYPEEPKKGEMNEFFGLYVERPFYIVSKLGEHRYLDLLNNRNMVIKTQNGRNTQMWWFDQKSYTIRTKLNN*
Ga0005233J53080_1014612	Ga0005233J53080_10146122	F012720	LATKAKTQDEFDKYSQNVDVPIDEIKAITLKVAPTFTRDQVESVTLKSFRKVVGYDTFNSILKGDRSEKKDVSDHYNVTVSMMIKRIPEEAAAAPARDPYGNGKTLAESLDKGFPYDDGDTSPDNMTPNWKDRKSQSATNVGKLNGENVTKEALVNLIRDSDSPIT*
Ga0005233J53080_1015395	Ga0005233J53080_10153952	F088935	MSSIGGLDVAFGARMQVVRTNVMCLALAGTGLANVTTVPKYILNTYKEALKGTVIEPDFLYIYELAQINASGLATTAAVANNLFNLDNSGDGTADVTALEVGGVLRDIRQTPLGTNSAFADTTATNAAFSSAYTLHNYYDINGNLALESVLSLSAFAL
Ga0005233J53080_1018603	Ga0005233J53080_10186031	F000055	MKFALIALLAVVSVNAIKIVGKDDPPPTAADTPTSGYFGADEDDVMNNIYNHYAVPVTNAAGQATGQKVLYKDGAQKASAEVLLVTKQVSEAKMEAYMGEFFPRTWAKFDINNSGEIDITESHTFMRSLMGRLNQFVLAPGSLTDISV*
Ga0005233J53080_1022365	Ga0005233J53080_10223651	F000787	VLAALIAAVSAGTPPTVGLGHGFVPANREDYDNAKELWKGDFAKYRAAHPHDQDCSISESDNWKGAQQCSQSWECRGARLCERGGWCSGYDGCEGTPLPDQAPGLLPDC*
Ga0005233J53080_1024658	Ga0005233J53080_10246581	F016006	ERYRVEEKNPDGHGTGIWKLPKYSSPQWAHDVIHRMHVMDDDKVDPYIAANIENFWKKYDNNGTGEIYESEGETFMRAVLGPNNRFRLAEGALSDMQSSAQIHVN*
Ga0005233J53080_1028257	Ga0005233J53080_10282571	F042367	MDQFSRKFNKQNYVNAVEIAGKLGAPLPKVHSWELLDRAFSFPRIRRYQFVQENLDMLEHFEDNMNTNISNSVNVANFMKVGKTVVTNLANKYSNGEFVDPGLYDPRSEDDYAGMNA*
Ga0005233J53080_1031023	Ga0005233J53080_10310232	F001478	MDVSGGKDVENQNIIVWNKHGGINQQWDVVYTDEWKGEPGKGELNEDFGLYVERPFYIVSQLPAGRYLDLIANRNMVIKTANGRNTQVWYFHQQSLTIKTKLNNQSWDIQGSGTSQNFQIWST
Ga0005233J53080_1033165	Ga0005233J53080_10331651	F077771	EKFKNIDYLNDFHKEYVDESLSELNERLHFEIIDGEAEAYDDETGEEIYKSIFRMELKDEGYGKKNYVSYEKYSPMLLLFDWLQNVIPANRYLNNWGGTAHIYSDQDWSSFESFMINSDGVLKESMLTTNSAYDKEIKPGKNVEFLYPDVKGEIK*
Ga0005233J53080_1035323	Ga0005233J53080_10353231	F031514	QDFGLYVERDFYIISEMNSHRYLDVIDNRNMVVKTRNGRKSQIWWFDQKSLSIRTRLNNQSFDMKNSGKSNDMQIYSTNSKWF*
Ga0005233J53080_1036064	Ga0005233J53080_10360642	F068904	LQDNMAGLGMGADDELVLAVNRLKSLQKLYLFEQKGGENYLG*
Ga0005233J53080_1036503	Ga0005233J53080_10365031	F063325	VLDRLFWESTIVMLKLFANGMSSWATGESSEWNNCFMCKDVIHVIDCFLQIQTFASASSLICRLEMSSQIVNSALADLVGSDGYLEYLTITNL
Ga0005233J53080_1040738	Ga0005233J53080_10407381	F001478	MWRLDNGFFVNEHGKVLDVQGGSDTENRYVLAWNKHGKINQQWDIIYADEWPQEPKKGEFSPEFGLYVERPFYIISQLPANRYLDLINNRNMVIKTQNSRNTQVWYFDQKSKTIKTKLNNQSWDIQSAGKTNNMQIWSTNSGWF*
Ga0005233J53080_1043796	Ga0005233J53080_10437961	F031514	EEPVKGELNKEFGLYVERDFFIVSQLDSHRYLEVIDNRKIVIKTPNGRNTQKWYFHQLSKTIRTRLNNQSFDIASSGKTNNLQIWSTNSGWW*
Ga0005233J53080_1046038	Ga0005233J53080_10460381	F015154	VTGQSSYYLMASSGAETELAARVVGRAQYPDEGNNDAYPIVEVWLNTHRDRYVTATASTA
Ga0005233J53080_1048141	Ga0005233J53080_10481411	F001219	VTFKFINPISKEIDDRAEFINYTLRKSTILLTFGYEKLSDCVLLLSEEITELNRQTKLTRNYCNSNFEKEVNLVQQENSKLLSKLKGDLAIKSAFLFSNISNDLNSLTDKFFEKKFQSAS
Ga0005233J53080_1049158	Ga0005233J53080_10491581	F009426	LEIKLIEQSTSTTAKVNKDVKLSSAMVTGETSYSIILFMTTSACVISAGAARETLFEGKADYCMIVCE*
Ga0005233J53080_1053004	Ga0005233J53080_10530041	F072409	MKYAAEEKTEDGAPSGNFFLNEASTRALASEVLGSHKGLKGGDLKEYLNTYFPRTWAHYDVNKTGFIGVEVAPQFMRFVASDQTLQF*
Ga0005233J53080_1055744	Ga0005233J53080_10557442	F007606	MIRRKNKSLTFILIGIIISLSGCAKNVVDKNNDLGGGDKSTLPVTLTSLIEHAEYCKTIYDSGGDQKDEVAFEVKQLNGISVIVIRGTSNESNIQSDIDVRLVEDELLGIYLHK

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

3300003701: Marine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - MetaT SI072_150m_A (Metagenome Metatranscriptome)

Overview

Ecosystem and Geography

Associated Families

Associated Scaffolds

Sequences