3300003701: Marine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - MetaT SI072_150m_A (Metagenome Metatranscriptome)

Overview

Basic Information

• IMG/M Taxon OID: 3300003701
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0046785 | Gp0055325 | Ga0005233
• Sample Name: Marine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - MetaT SI072_150m_A (Metagenome Metatranscriptome)
• Sequencing Status: Permanent Draft
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Published?: Y
• Use Policy: Open

Dataset Contents

• Total Genome Size: 58024383
• Sequencing Scaffolds: 20
• Novel Protein Genes: 29
• Associated Families: 20

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → Viruses → Predicted Viral	2
Not Available	10
All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora → Intramacronucleata → Spirotrichea → Oligotrichia → Strombidiidae → Strombidium → Strombidium inclinatum	2
All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora → Intramacronucleata → Spirotrichea → Oligotrichia → Strombidiidae → Strombidium → Strombidium rassoulzadegani	2
All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora → Intramacronucleata → Spirotrichea → Stichotrichia → Sporadotrichida → Oxytrichidae	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae → Streptomyces → Streptomyces thermolilacinus	1
All Organisms → cellular organisms → Eukaryota → Sar	1
All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora → Intramacronucleata → Spirotrichea → Oligotrichia → Strombidiidae → Strombidium	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Marine Microbial Communities From Expanding Oxygen Minimum Zones In The Northeastern Subarctic Pacific Ocean
• Type: Environmental
• Taxonomy: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From Expanding Oxygen Minimum Zones In The Northeastern Subarctic Pacific Ocean

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): marine biome → coastal inlet → sea water
• Earth Microbiome Project Ontology (EMPO): Free-living → Saline → Water (saline)

Location Information

• Location: British Columbia, Canada
• Coordinates
  • Lat. (^o): 48.7299
  • Long. (^o): -123.5699
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000055	Metagenome / Metatranscriptome	3096	Y
F000075	Metagenome / Metatranscriptome	2622	Y
F000155	Metagenome / Metatranscriptome	1877	Y
F000787	Metagenome / Metatranscriptome	891	Y
F001219	Metagenome / Metatranscriptome	744	Y
F001478	Metagenome / Metatranscriptome	687	Y
F007606	Metagenome / Metatranscriptome	348	Y
F009426	Metagenome / Metatranscriptome	318	Y
F012720	Metagenome / Metatranscriptome	278	Y
F015154	Metagenome / Metatranscriptome	257	Y

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0005233J53080_1006561	All Organisms → Viruses → Predicted Viral	2721
Ga0005233J53080_1006956	All Organisms → Viruses → Predicted Viral	1335
Ga0005233J53080_1007078	Not Available	522
Ga0005233J53080_1010083	Not Available	970
Ga0005233J53080_1014612	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora → Intramacronucleata → Spirotrichea → Oligotrichia → Strombidiidae → Strombidium → Strombidium inclinatum	2643
Ga0005233J53080_1015395	Not Available	1193
Ga0005233J53080_1022365	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora → Intramacronucleata → Spirotrichea → Oligotrichia → Strombidiidae → Strombidium → Strombidium rassoulzadegani	503
Ga0005233J53080_1024658	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora → Intramacronucleata → Spirotrichea → Oligotrichia → Strombidiidae → Strombidium → Strombidium inclinatum	513
Ga0005233J53080_1028257	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora → Intramacronucleata → Spirotrichea → Oligotrichia → Strombidiidae → Strombidium → Strombidium rassoulzadegani	793
Ga0005233J53080_1031023	Not Available	613

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0005233J53080_1002667	Ga0005233J53080_10026671	F000155	LTTMKFTALIAVAAASKYDQMNEDELLVSLESTLSSAQRSEARGDGDAAVAKTAAIKNIQKALTARILKRLDDGQPLVEVARKMKAIEGMQP*
Ga0005233J53080_1002838	Ga0005233J53080_10028381	F000155	INKLFYTAMKFLAFAAVVAANRYDNMTEDDLLVNLESTLSSALSSEARGDGDAAVAKTAAIKNIQKALTARILKRLDDGQPLVEVARKMKAIEGMQP*
Ga0005233J53080_1003506	Ga0005233J53080_10035061	F000075	KNFTFLQMKFAACLIATVAANRYESMNEDDLLVNLESTLSSALSSEARGDADAAVAKTAAIKNIQKALTARILKRLDDGQPLVEVARKMKAIEGMQPQINDMERRLGIMQSVEPVLENAIKTLQKVVDVRGMGKK*
Ga0005233J53080_1004050	Ga0005233J53080_10040501	F000155	INLKMKFAAALIATVSANTYDFMGEDDLLSQLESTLSSAQMSEARGDADAAVAKTAAIKNIQKALTARILKRLDDGQPLVEVARKMKAIEGMQP*
Ga0005233J53080_1004263	Ga0005233J53080_10042631	F000155	FTLLVAAVAANQFDNMNEDELLVNLESTLSSALSSEARGDGDAAVAKTAAIKNIQKALTARILKRLDDGQPLVEVARKMKAIEGMQP*
Ga0005233J53080_1004839	Ga0005233J53080_10048391	F000155	EMKFCALIAAVAANQYDSMNEDELLVSLESTLSSAQRSEARGDGDAAVAKTAAIKNIQKALTARILKRLDDGQPLVEVARKMKAIEGMQP*
Ga0005233J53080_1006561	Ga0005233J53080_10065612	F102126	MGKKGKDIQRGQDAKRLVEDPLYKEAFEDTKNHLNEMLLQTKISEETERDRIYITIKSLGLVDEHIRSVLTTGKLAEGQDEFY*
Ga0005233J53080_1006956	Ga0005233J53080_10069561	F001478	MDVQGNVDGENKNIQVFNKHGKLNQQWDVVYTDEWKGEPGKGELNEDFGLYVERPFYIVSQMAAHRYLDLINNRNFVIKTPNGRNTQIWYFHQQSLTIRTKLNNQSWDIKSAGKTNEMQIWSTNSGWFQVFKYADEHFLNF*
Ga0005233J53080_1006956	Ga0005233J53080_10069562	F001478	MDVHGGQDDESRNVIVWNRHKGLNQQWDIVYADEYPEEPKKGEMNEFFGLYVERPFYIVSKLGQHRYLDLLNNRNMVIKTQNGRKTQMWWFDQKSLTIRTKLNNQSFDIKSAGKTNE
Ga0005233J53080_1007078	Ga0005233J53080_10070781	F096688	EIVFYAIDRMSLKDKEGEFMRIIKGLAVVGYASIMLLVLTGGRSANEAEFNAGHQACDAQFNMDAMQAFEMDPSEPFVQCHVAVNEAYPAAWNNWRRQNARTRGIEAAGAGKRGRSC*
Ga0005233J53080_1010083	Ga0005233J53080_10100831	F001478	ELRAISTCNSRWWNLFRYKENAFVTNDKGKVMDVAGGQDSESRNVIMYKRHGKINQQWDIVYADEYPEEPKKGEMNEFFGLYVERPFYIVSKLGEHRYLDLLNNRNMVIKTQNGRNTQMWWFDQKSYTIRTKLNN*
Ga0005233J53080_1014612	Ga0005233J53080_10146122	F012720	LATKAKTQDEFDKYSQNVDVPIDEIKAITLKVAPTFTRDQVESVTLKSFRKVVGYDTFNSILKGDRSEKKDVSDHYNVTVSMMIKRIPEEAAAAPARDPYGNGKTLAESLDKGFPYDDGDTSPDNMTPNWKDRKSQSATNVGKLNGENVTKEALVNLIRDSDSPIT*
Ga0005233J53080_1015395	Ga0005233J53080_10153952	F088935	MSSIGGLDVAFGARMQVVRTNVMCLALAGTGLANVTTVPKYILNTYKEALKGTVIEPDFLYIYELAQINASGLATTAAVANNLFNLDNSGDGTADVTALEVGGVLRDIRQTPLGTNSAFADTTATNAAFSSAYTLHNYYDINGNLALESVLSLSAFAL
Ga0005233J53080_1018603	Ga0005233J53080_10186031	F000055	MKFALIALLAVVSVNAIKIVGKDDPPPTAADTPTSGYFGADEDDVMNNIYNHYAVPVTNAAGQATGQKVLYKDGAQKASAEVLLVTKQVSEAKMEAYMGEFFPRTWAKFDINNSGEIDITESHTFMRSLMGRLNQFVLAPGSLTDISV*
Ga0005233J53080_1022365	Ga0005233J53080_10223651	F000787	VLAALIAAVSAGTPPTVGLGHGFVPANREDYDNAKELWKGDFAKYRAAHPHDQDCSISESDNWKGAQQCSQSWECRGARLCERGGWCSGYDGCEGTPLPDQAPGLLPDC*
Ga0005233J53080_1024658	Ga0005233J53080_10246581	F016006	ERYRVEEKNPDGHGTGIWKLPKYSSPQWAHDVIHRMHVMDDDKVDPYIAANIENFWKKYDNNGTGEIYESEGETFMRAVLGPNNRFRLAEGALSDMQSSAQIHVN*
Ga0005233J53080_1028257	Ga0005233J53080_10282571	F042367	MDQFSRKFNKQNYVNAVEIAGKLGAPLPKVHSWELLDRAFSFPRIRRYQFVQENLDMLEHFEDNMNTNISNSVNVANFMKVGKTVVTNLANKYSNGEFVDPGLYDPRSEDDYAGMNA*
Ga0005233J53080_1031023	Ga0005233J53080_10310232	F001478	MDVSGGKDVENQNIIVWNKHGGINQQWDVVYTDEWKGEPGKGELNEDFGLYVERPFYIVSQLPAGRYLDLIANRNMVIKTANGRNTQVWYFHQQSLTIKTKLNNQSWDIQGSGTSQNFQIWST
Ga0005233J53080_1033165	Ga0005233J53080_10331651	F077771	EKFKNIDYLNDFHKEYVDESLSELNERLHFEIIDGEAEAYDDETGEEIYKSIFRMELKDEGYGKKNYVSYEKYSPMLLLFDWLQNVIPANRYLNNWGGTAHIYSDQDWSSFESFMINSDGVLKESMLTTNSAYDKEIKPGKNVEFLYPDVKGEIK*
Ga0005233J53080_1035323	Ga0005233J53080_10353231	F031514	QDFGLYVERDFYIISEMNSHRYLDVIDNRNMVVKTRNGRKSQIWWFDQKSLSIRTRLNNQSFDMKNSGKSNDMQIYSTNSKWF*
Ga0005233J53080_1036064	Ga0005233J53080_10360642	F068904	LQDNMAGLGMGADDELVLAVNRLKSLQKLYLFEQKGGENYLG*
Ga0005233J53080_1036503	Ga0005233J53080_10365031	F063325	VLDRLFWESTIVMLKLFANGMSSWATGESSEWNNCFMCKDVIHVIDCFLQIQTFASASSLICRLEMSSQIVNSALADLVGSDGYLEYLTITNL
Ga0005233J53080_1040738	Ga0005233J53080_10407381	F001478	MWRLDNGFFVNEHGKVLDVQGGSDTENRYVLAWNKHGKINQQWDIIYADEWPQEPKKGEFSPEFGLYVERPFYIISQLPANRYLDLINNRNMVIKTQNSRNTQVWYFDQKSKTIKTKLNNQSWDIQSAGKTNNMQIWSTNSGWF*
Ga0005233J53080_1043796	Ga0005233J53080_10437961	F031514	EEPVKGELNKEFGLYVERDFFIVSQLDSHRYLEVIDNRKIVIKTPNGRNTQKWYFHQLSKTIRTRLNNQSFDIASSGKTNNLQIWSTNSGWW*
Ga0005233J53080_1046038	Ga0005233J53080_10460381	F015154	VTGQSSYYLMASSGAETELAARVVGRAQYPDEGNNDAYPIVEVWLNTHRDRYVTATASTA
Ga0005233J53080_1048141	Ga0005233J53080_10481411	F001219	VTFKFINPISKEIDDRAEFINYTLRKSTILLTFGYEKLSDCVLLLSEEITELNRQTKLTRNYCNSNFEKEVNLVQQENSKLLSKLKGDLAIKSAFLFSNISNDLNSLTDKFFEKKFQSAS
Ga0005233J53080_1049158	Ga0005233J53080_10491581	F009426	LEIKLIEQSTSTTAKVNKDVKLSSAMVTGETSYSIILFMTTSACVISAGAARETLFEGKADYCMIVCE*
Ga0005233J53080_1053004	Ga0005233J53080_10530041	F072409	MKYAAEEKTEDGAPSGNFFLNEASTRALASEVLGSHKGLKGGDLKEYLNTYFPRTWAHYDVNKTGFIGVEVAPQFMRFVASDQTLQF*
Ga0005233J53080_1055744	Ga0005233J53080_10557442	F007606	MIRRKNKSLTFILIGIIISLSGCAKNVVDKNNDLGGGDKSTLPVTLTSLIEHAEYCKTIYDSGGDQKDEVAFEVKQLNGISVIVIRGTSNESNIQSDIDVRLVEDELLGIYLHK