Sample 3300003653

3300003653: Subglacial freshwater microbial communities from Lake Whillans, Antarctica - 0.2 micron filter

Overview

Basic Information
IMG/M Taxon OID	3300003653 Open in IMG/M
GOLD Reference (Study \| Sequencing Project \| Analysis Project)	Gs0112339 \| Gp0107768 \| Ga0062109
Sample Name	Subglacial freshwater microbial communities from Lake Whillans, Antarctica - 0.2 micron filter
Sequencing Status	Permanent Draft
Sequencing Center
Published?	N
Use Policy	Open

Dataset Contents
Total Genome Size	17307177
Sequencing Scaffolds	36
Novel Protein Genes	43
Associated Families	43

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	8
Not Available	10
All Organisms → cellular organisms → Bacteria	2
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	4
All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Nitrosomonadales → Methylophilaceae → unclassified Methylophilaceae → Methylophilaceae bacterium	1
All Organisms → Viruses → Predicted Viral	4
All Organisms → Viruses	1
All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrosopumilales → Nitrosopumilaceae → unclassified Nitrosopumilaceae → Nitrosopumilaceae archaeon	1
All Organisms → cellular organisms → Bacteria → Proteobacteria	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1
All Organisms → Viruses → unclassified bacterial viruses → environmental samples → uncultured marine phage	3

Ecosystem and Geography

Ecosystem Assignment (GOLD)
Name	Subglacial Freshwater Microbial Communities From Lake Whillans, Antarctica
Type	Environmental
Taxonomy	Environmental → Aquatic → Freshwater → Ice → Glacial Lake → Subglacial Freshwater → Subglacial Freshwater Microbial Communities From Lake Whillans, Antarctica

Alternative Ecosystem Assignments
Environment Ontology (ENVO)	freshwater lake biome → subglacial lake → lake water
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Water (non-saline)

Location Information
Location	West Antarctica
Coordinates	Lat. (^o)	-84.24	Long. (^o)	-153.694	Alt. (m)	N/A	Depth (m)	800
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F000311	Metagenome / Metatranscriptome	1326	Y
F000376	Metagenome / Metatranscriptome	1216	Y
F000473	Metagenome / Metatranscriptome	1097	Y
F000671	Metagenome / Metatranscriptome	945	Y
F000808	Metagenome / Metatranscriptome	882	Y
F001043	Metagenome / Metatranscriptome	794	Y
F001106	Metagenome / Metatranscriptome	776	Y
F001235	Metagenome / Metatranscriptome	741	Y
F002489	Metagenome / Metatranscriptome	554	Y
F002501	Metagenome / Metatranscriptome	553	Y

Showing 1 to 10 of 43 entries

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
SLW02_100280	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	10977	Open in IMG/M
SLW02_100498	Not Available	5331	Open in IMG/M
SLW02_100629	All Organisms → cellular organisms → Bacteria	4425	Open in IMG/M
SLW02_100744	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	3154	Open in IMG/M
SLW02_100818	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	2981	Open in IMG/M
SLW02_100827	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Nitrosomonadales → Methylophilaceae → unclassified Methylophilaceae → Methylophilaceae bacterium	4003	Open in IMG/M
SLW02_101057	All Organisms → Viruses → Predicted Viral	3594	Open in IMG/M
SLW02_101077	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	3309	Open in IMG/M
SLW02_101196	All Organisms → Viruses → Predicted Viral	3133	Open in IMG/M
SLW02_101595	All Organisms → Viruses	1914	Open in IMG/M

Showing 1 to 10 of 36 entries

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Sequences

Scaffold ID	Protein ID	Family	Sequence
SLW02_100280	SLW02_10028019	F033436	MISQYWKDQIPAKPLSIQVKDQVGVNYDLSNYTTIEVNMVGSKNEDVDLTGSSISRTNANIGLIKFIWPTNRSLFTRTGDYVLQLKLSGTDKLDFTSTHTMRVRKLGKGIRD*
SLW02_100280	SLW02_1002807	F007364	MGYSTFTEDQITEFIEMAQEMGIGPSMRALGYPKSYHTARKWHEQRHVAMPTSNTLAQMSKQLDIFYGDKEKVLAAQAVIDRTVEALYQDDLTSDDINKLSNALHKAIQTINLIEGKSTNINENRSKDGSDLAIMDILNEAKMRSSSIKESLRVVQN*
SLW02_100498	SLW02_1004981	F000671	MEKILCYSCNKSKNKLETKKSSLLNINLFICETCSIAKLEPRWVVILAGRTNGSDYVKEVILKKRYLGADITASELLV*
SLW02_100629	SLW02_1006293	F049580	VSTKRAVDPRDPRGGLRGLDVPVIPGSEPPDPERAAADERRGLFGVKLIVGGLVGSAILFTILGIIAQRLGT*
SLW02_100744	SLW02_1007442	F011299	MMSRKDFKATADILKYASDKMHPALFSKIVNDFAVMFAKDNPRFDVVKFHEASNFKPLLKAVK*
SLW02_100744	SLW02_1007448	F085262	MNSLNTILADWYPDGNFTEDELWYAIAESEGVDPCEIMDGDITDYL*
SLW02_100818	SLW02_1008185	F003408	MPEIINTLKAMQKKEYESRKFSASLKGVDLEEAKKEGPTFEDIRLKALGINASKDDVVSLQGSLAGEAGFGIGAGLGYSKE*
SLW02_100827	SLW02_1008277	F000473	MTNSDHFKYGVNEWTGEPNKPVFYSNEMSKRVRDIKRPVHNLQMDIVQYPEFLAIRLYEDNFIQFDGIKKEMVIDYVSKVKRLIESYGVRCEMEGRPSERILRSN*
SLW02_101057	SLW02_1010575	F001043	MFPSMKQLDIQGDKMSDYKEGFDDGVKFAREEMIDKLREIDINDIDSWLLDRLADMIEGGKL*
SLW02_101057	SLW02_1010576	F000311	MYFELQAKTPKSFHHAVWEADLIGLDPKVLSEALLTFNIGTGSIEKVSNLRDKHNLTEIYVSEYETTGYTGR*
SLW02_101077	SLW02_1010774	F074419	MAGKKNFEVDQNTTFTFIVEYKDNNGDPITDLVSAKLHVRDTAGGSK
SLW02_101196	SLW02_1011966	F027826	MAKPWQSRQEMLVDLALESAISDPETIRQIRPVTPIQMSPERYGYSKRESGIIDVLSLQRNAPSNRSWVSGAPVMFRNGFIDDSFEGSSRYSMQSLWS*
SLW02_101595	SLW02_1015952	F004305	MDTYMKDVKQEQGEAVRQHHRNAAGAWITGSALKEKATATQPLANSDHGNFQANKGIQKSNA*
SLW02_101749	SLW02_1017494	F055682	MYDINDLPSLKRHWLLRTSNIPRRFIGLEPSDIVERTGEFSLEISTWVDDVLGSHVIKQVGKIGTNGVGLLLDGGPGIGKTTHAVVAAMEVIRRLPDDTEECRKLLGMSSSDFGMQSRPVHYITYPEFLSKKKSSFDADPEEKKQTMYEIDGMHGRSRLDHLNVRILVIDDLGK
SLW02_101935	SLW02_1019353	F004727	MKVKIEYHDHDSLTVEEIVKYAEANYGKAARIEITPESGLAYDHIYFGLQQLITHEQLSLIYDTNSYQQDIKQLRSDVLYKITEILDQVIIDNEARVG*
SLW02_102060	SLW02_1020602	F000376	MSYQEKAKECKCCGKHIPLPTVLKEYNGICVCPTTFSNIAEYKRIWLSFGSRPSGNIRKHFSDYVQQIVEQSIGE*
SLW02_102071	SLW02_1020712	F099846	FSGFRLYSAKAGLLADVGASNNSGLGGTIEGGLIAAAIKPTVQEVTLKPKTLQYVFEASEVLEQLVDNSRDDNFGSLAQQRVYASDQFKERVNLMLTKIPVDVAATDVLQRLDLESLDRIVSSKAEYDFEAHVNVAALYTPWTSANGTGINRAGATTWDSYVTSPSGTIGTADVLTDSVLRSALANVRIAAGKEPTVMIGGQDTYSEVQSIYMNAYRIQNTADLRTEFSVSVNGVESFTGTGAGLHISTIYGLPFIPSKDTPTSAEGSVGDLFILNTSADKNSPSKPLIGLQILKPIVYYEAGKRQQGYPFINEAFTDRAMYNMLAETGCTNFKVHAKIRDIASGI*
SLW02_102354	SLW02_1023542	F047682	MRSQTVIYIRWKLTGRIEHFINLGKLFSRYGNNEIGVSRGSLDRKNLYDGFKNDTVEIIKSYVK*
SLW02_102690	SLW02_1026903	F009741	MTNSVDGRYDRTKPWSTFRSPVLPDQVAKKYSYQGPWATNMERLTQQALMIMTIPGADIQAMVRPPLPQIRLFPDRFGYGFRGQPGIADVVTIDRQYHEPRISWFSGSPAGYSGAARNDLGGI*
SLW02_103067	SLW02_1030672	F010448	FDKALNFINETYYRKNLTIKIERKIGDIDKLAANKLWLISNNYGISLELAGFENQGWTEVLLDMAFEKLERRIVNPFNYWQLYESPQDLVETLPYRANLKGVIDIAGRVAMYGSAGIEINNL*
SLW02_103111	SLW02_1031112	F002501	MYCRKCNGRVFVDRVFSQKLHMELFCIMCGFRVMANKETSKFGKWLSQKEEANQKYYGIFS*
SLW02_103122	SLW02_1031223	F014154	MDDTPDIFKIKTMGKVNIVTEDRRKTVSPFNSAKHFKGANLPALCNQCVYRSIEEGGNGKCPKYEKDAVCAIRADFVKLLNNLDTRNPEDVK
SLW02_103233	SLW02_1032332	F002997	MSITRFENIVVNNLAFGKSAFGEQSTTQTAWFTTRARVANVSNSLQISEKYRLYQNLIHFTLNYTPHTKKIFDSQDLYSITWRDNDWRITDIRESDDRMNVVILGYRNDPVTAV*
SLW02_103260	SLW02_1032601	F058138	GVGTARFYLAAAGYGGDKAIFGYGYVNTSLTNLVSNTGVVSADVTGVGTARHAPAAAGYGTDKAIFGYGYTTVVVSMTNLVSNTGVVSADVTGVGTARINIAAAAFGDKAIFGYGWTNATASMTNLVSNTGVVSADVTGVGTARYYLAAASYG*
SLW02_103335	SLW02_1033351	F019092	TKRSIMTIPILGQKKQNNEEMFRLLYCLVCGTLEELPPYDGPLEQDVLLTIACETHVFPSGEPHKGKLFVIPIRAWAHTDSRKEMIRQIRGGGSKGIAEIDDKFYESRSNFMEDAMTCYGQHNKPKDGCVDWHIKQKMLVPNTAKERKEEGMERYADSPGPKTYLCDFCPVAIGVATRKQKLMGMK*
SLW02_103733	SLW02_1037332	F001235	MPTKLNVDKGGLDIGNKLWAKHQKNEYTRVNNYKEAICLNCLKKDVAGATVAMICGDCAGVRGRETLLAVISTKFYGMCLFCGKYKFHLEEINARFCMPCHRKIADVCKDYNKKGGMYGNDPYWLKIKKRNGKDWRQMYSDGWSVKNN*
SLW02_104031	SLW02_1040312	F018874	MTDDDHSQMMIERMQMFEEAIQRAEAGVATEDDWNMIRWECGVARRPTVTLETISIRSEP
SLW02_104093	SLW02_1040932	F012098	MPKVHSIGPAHFVQITNFPFKWGKKIIVRGWTQEIEPPFRTSDPLIVRLPYYKALVFGRWTGTKTEEEALNGALQRRDLTYEDFTEEAGWTPAPDSDRKESLEDIDSRLDSVDGALDVHDWQTDDRMAKKSE*
SLW02_104093	SLW02_1040933	F084140	MEHSMYTIGKLMTEWQRSQNSDSLLDEVELGAEAFLAIAKELRSRR*
SLW02_104496	SLW02_1044962	F067449	MIGKRFNFEDVFFRDLTVCVLDTMEGQINWVNRFSSGDVYVKVPFYYSLTGDERFLLDSFTDDIVSENRFIELNTDMIPRGHLTMTNFTVRSDEFCNPNVWLKMVVEDDVEIRKVLSKVRAIP
SLW02_104744	SLW02_1047442	F087902	MVELNHDVKDVSADVLVKGNHGVIVAVHVTKVGASGDKIELRNGTSTSDTLEFTVFGESIQNVQDINRRFESGIYADVTGTTARYLIVYK*
SLW02_104958	SLW02_1049582	F001106	MSFDTLKVAELKTIATDFAVDTEGLKNKKDIIAAMAEEGVTYSVYSKTIADMKDVDEDEKLEIIPRFNPKDLGENAMLVRMTRDNMRYDVKGHTFTKSHPFVGMSEEEAQSIFDTEEGFRLATPKEVQDFYH*
SLW02_105284	SLW02_1052841	F020512	GGQIEGVDFSPQPFQMGRSLLNRVIGLLGSYVDVSTMAQ*
SLW02_105453	SLW02_1054531	F018172	NNGLAIDLSGASAKLQVRDTAGGSKVAYTLTSDGGGIVIDDVLGKLTCKATPTHTNKLFFPKSSYDLMLTDSNLNKTKLLEGFITLSRSVTI*
SLW02_105477	SLW02_1054773	F000808	MEYLYSLTTSYDGELVNTLRVSDLLKIVEAWTKCVDFGDAKEYATYNLSDPSGKMYTKTFYRNGKVEVR*
SLW02_105504	SLW02_1055042	F008806	MSFVLDEDEALRNLLKDMVVTDQKSVTEEGPTRTVGVWFGQPDQEIRNQSYPFITIDMIDIAEDFTRAMRGKVKPAYLTNPSTIGEDTEFDGDLHGWDIDYPIPVNIDYQITSYSRQPRHDRQILATLLHTKLPFRFATLVTGPNTVYGTNRRLDVLDVSKRDVTEQGKRLFVNAITVRISSEIVSTTFNKLYKAQEINVTG
SLW02_106164	SLW02_1061641	F030442	DHIPGFSANWNSSPGGAAGNYPMDRDMDDKRYSGIIGPKISSKTVAVGTIEISSALRRTEIEDIKANTGMDIVQKMESILVNELSQTISKQIVAKIFEMGSLNATTAPKSSAYPTLTIFDLDTVYADGGLGGETTHAVQRKLITKIAHASNYLATEGRIGPAQYLITNGGLAAALQDIAGYTLNPVNSKMNSQGQLYPVGTIGDISIYVDPFMKYNDNRIVVGRKNNPDQPGIIFVPYLMAQSISIISEATFAPRMLLRSRYAVTEVGWYP
SLW02_106434	SLW02_1064342	F035758	EQQKGILSVELPSTLGRNLSYHGYVSTFAAIPSMIRKITQA*
SLW02_106771	SLW02_1067711	F015975	MDFKLAGDTEIGHMHQFDHLTLLAAGSLKVTVDGVITEFKAPHMIYIHADKHHELVALEDNTIAYCIHALRGEAGAGDILDPSMIPLGVNPATFPNTFIKYTDQMEG*
SLW02_107237	SLW02_1072372	F002489	MENKDLEKSTNLEDNLPMVTYIMLHRVYDMLTLIAQSMCEEEKVLKMVQYHEQGYLLGPSPSYKPGEENAQE*
SLW02_107783	SLW02_1077831	F008248	MKNLKLELFNFKKNLSLDQEEISRIVEAHMNSCNDLSEKTIIVSLNERLKPYTYDGGVKSLLENLDNDMKNYELLYELKNLYGVLNTKNQGELYRQPINVLLQTINLETDQDRMSKILNELAIYDWVPEIKLFVYNLTKSPEQRSNLLSGGKGESIFSIVEQVEQGHIALVRDSWFLLSENTIEKTLLESHVKDEESLRMLRTLETAMKYSYVTEDRVNFRISE
SLW02_108104	SLW02_1081041	F025224	MRDVVWLPGGLFDNINKFANSLGYENAGIALQLSMVSWQSPEDRDLFIEAITGDDVQGSDEKTYPTNKFGR*
SLW02_108110	SLW02_1081103	F082174	MSETKKFGPYKGSKANGGRPIYVYKKKVGGKWVTTSKNKARADYESKHGKLSKDTDVDHR

Showing 1 to 43 of 43 entries

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

3300003653: Subglacial freshwater microbial communities from Lake Whillans, Antarctica - 0.2 micron filter

Overview

Ecosystem and Geography

Associated Families

Associated Scaffolds

Sequences