3300003647: Compost microbial communities from Sao Paulo Zoo, Brazil - ZC4 day 78

Overview

Basic Information

• IMG/M Taxon OID: 3300003647
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0047180 | Gp0094562 | Ga0061050
• Sample Name: Compost microbial communities from Sao Paulo Zoo, Brazil - ZC4 day 78
• Sequencing Status: Permanent Draft
• Sequencing Center: University of Sao Paulo, Virginia Bioinformatics Institute
• Published?: Y
• Use Policy: Open

Dataset Contents

• Total Genome Size: 237413255
• Sequencing Scaffolds: 4
• Novel Protein Genes: 4
• Associated Families: 4

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
Not Available	1
All Organisms → cellular organisms → Bacteria → Acidobacteria	1
All Organisms → cellular organisms → Bacteria → Proteobacteria	1
All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Compost Microbial Communities From Sao Paulo Zoo, Brazil
• Type: Engineered
• Taxonomy: Engineered → Solid Waste → Zoo Waste → Composting → Unclassified → Compost → Compost Microbial Communities From Sao Paulo Zoo, Brazil

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Free-living → Non-saline → Soil (non-saline)

Location Information

• Location: Sao Paulo Zoo, Brazil
• Coordinates
  • Lat. (^o): -23.651072
  • Long. (^o): -46.620675
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001417	Metagenome / Metatranscriptome	699	Y
F012882	Metagenome / Metatranscriptome	276	Y
F020718	Metagenome / Metatranscriptome	222	Y
F098955	Metagenome / Metatranscriptome	103	Y

Associated Scaffolds

Scaffold	Taxonomy	Length
metazooDRAFT_1402029	Not Available	503
metazooDRAFT_1404142	All Organisms → cellular organisms → Bacteria → Acidobacteria	507
metazooDRAFT_1493189	All Organisms → cellular organisms → Bacteria → Proteobacteria	864
metazooDRAFT_1507205	All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium	1145

Sequences

Scaffold ID	Protein ID	Family	Sequence
metazooDRAFT_1402029	metazooDRAFT_14020291	F012882	QDSLDALRKATETSYFKAPDAVWVKLVIPTAPKGVGRDEFGPLESQTSIVVRR*
metazooDRAFT_1404142	metazooDRAFT_14041421	F020718	MHESEIIPLRGEAVTLWRLARDREQLHCFLVEPPFGFWLGVERAGELVFSQTYHELDTALQQAEGLKSPLLVAGWTEVEDH*
metazooDRAFT_1493189	metazooDRAFT_14931891	F001417	ARAATLAGRPCEVQIVAMDGAQASAIHQALVSVQDAVTQMTFSSCDKDDVLELIERVENELHSPHPNLALMCTFLNSIARSLRAQPEAREACLAIEEAIEKAGMPSTWQSGI*
metazooDRAFT_1507205	metazooDRAFT_15072051	F098955	GGRGAGVGDAATRALPSSGVDMDSSAIPVFLAGPFPVLHTARVLHDEQEVELDVALLIGGMPTMLAATRFPLDETWERIQRALSSGDARLAVAGVPHEAQSITGAPEIYPSAYVGLECANGERLVLAHIKGPDRQQEAEGYARSVISAILEGRTPAELGELIED*