3300003645: Estuarine microbial communities from the Sarno estuary, Gulf of Naples, Italy - Sample Station 1

Overview

Basic Information

• IMG/M Taxon OID: 3300003645
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0145067 | Gp0106760 | Ga0061054
• Sample Name: Estuarine microbial communities from the Sarno estuary, Gulf of Naples, Italy - Sample Station 1
• Sequencing Status: Permanent Draft
• Published?: Y
• Use Policy: Open

Dataset Contents

• Total Genome Size: 109383973
• Sequencing Scaffolds: 44
• Novel Protein Genes: 47
• Associated Families: 46

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → Viruses	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales → Pelagibacteraceae → Candidatus Pelagibacter → Candidatus Pelagibacter ubique	1
All Organisms → cellular organisms → Bacteria → environmental samples → uncultured bacterium BAC13K9BAC	1
All Organisms → cellular organisms → Bacteria	5
Not Available	20
All Organisms → Viruses → Predicted Viral	1
All Organisms → Viruses → unclassified viruses → Virus sp.	2
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales → Pelagibacteraceae → Candidatus Pelagibacter → unclassified Candidatus Pelagibacter → Candidatus Pelagibacter sp. TMED203	1
All Organisms → Viruses → unclassified viruses → unclassified DNA viruses → unclassified dsDNA viruses → Prokaryotic dsDNA virus sp.	3
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	2
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales → Pelagibacteraceae → Candidatus Pelagibacter	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales → Pelagibacteraceae	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium MarineAlpha5_Bin12	1
All Organisms → cellular organisms → Archaea → Euryarchaeota → unclassified Euryarchaeota → Euryarchaeota archaeon	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Cellvibrionales → Porticoccaceae → unclassified Porticoccaceae → Porticoccaceae bacterium	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Estuary Microbial Community From Gulf Of Naples, Italy
• Type: Environmental
• Taxonomy: Environmental → Aquatic → Marine → Neritic Zone → Unclassified → Estuarine → Estuary Microbial Community From Gulf Of Naples, Italy

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): estuarine biome → estuary → estuarine water
• Earth Microbiome Project Ontology (EMPO): Free-living → Saline → Water (saline)

Location Information

• Location: Gulf of Naples
• Coordinates
  • Lat. (^o): 40.7245
  • Long. (^o): 14.3775
  • Alt. (m): N/A
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000754	Metagenome / Metatranscriptome	906	Y
F001756	Metagenome / Metatranscriptome	641	Y
F002188	Metagenome / Metatranscriptome	585	Y
F002192	Metagenome / Metatranscriptome	585	Y
F003637	Metagenome / Metatranscriptome	476	Y
F005130	Metagenome / Metatranscriptome	411	Y
F005882	Metagenome / Metatranscriptome	387	Y
F006685	Metagenome	367	N
F017320	Metagenome / Metatranscriptome	241	N
F018290	Metagenome / Metatranscriptome	236	N
F020899	Metagenome	221	N
F021211	Metagenome / Metatranscriptome	220	Y
F021544	Metagenome / Metatranscriptome	218	Y
F022000	Metagenome / Metatranscriptome	216	Y
F023136	Metagenome / Metatranscriptome	211	Y
F024116	Metagenome / Metatranscriptome	207	Y
F025718	Metagenome	200	Y
F028038	Metagenome / Metatranscriptome	193	Y
F029471	Metagenome / Metatranscriptome	188	N
F031878	Metagenome / Metatranscriptome	181	Y
F033463	Metagenome / Metatranscriptome	177	N
F034541	Metagenome / Metatranscriptome	174	N
F035775	Metagenome / Metatranscriptome	171	Y
F036279	Metagenome / Metatranscriptome	170	N
F039819	Metagenome / Metatranscriptome	163	Y
F040644	Metagenome / Metatranscriptome	161	Y
F042010	Metagenome / Metatranscriptome	159	N
F044950	Metagenome / Metatranscriptome	153	Y
F051454	Metagenome	144	Y
F054890	Metagenome / Metatranscriptome	139	Y
F054892	Metagenome / Metatranscriptome	139	N
F055643	Metagenome / Metatranscriptome	138	N
F057388	Metagenome / Metatranscriptome	136	N
F058929	Metagenome / Metatranscriptome	134	N
F060815	Metagenome	132	N
F062276	Metagenome	131	N
F063454	Metagenome / Metatranscriptome	129	Y
F064092	Metagenome / Metatranscriptome	129	N
F071273	Metagenome / Metatranscriptome	122	N
F077329	Metagenome / Metatranscriptome	117	Y
F079298	Metagenome / Metatranscriptome	116	Y
F081896	Metagenome / Metatranscriptome	114	Y
F084269	Metagenome / Metatranscriptome	112	N
F084343	Metagenome / Metatranscriptome	112	Y
F100002	Metagenome / Metatranscriptome	103	N
F101092	Metagenome / Metatranscriptome	102	Y

Associated Scaffolds

Scaffold	Taxonomy	Length
NAP1_1001051	All Organisms → Viruses	2339
NAP1_1001889	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales → Pelagibacteraceae → Candidatus Pelagibacter → Candidatus Pelagibacter ubique	1918
NAP1_1001950	All Organisms → cellular organisms → Bacteria → environmental samples → uncultured bacterium BAC13K9BAC	1894
NAP1_1002813	All Organisms → cellular organisms → Bacteria	1667
NAP1_1002919	All Organisms → cellular organisms → Bacteria	1646
NAP1_1003625	Not Available	1521
NAP1_1005639	All Organisms → Viruses → Predicted Viral	1289
NAP1_1006066	Not Available	1256
NAP1_1012370	All Organisms → Viruses → unclassified viruses → Virus sp.	965
NAP1_1015008	All Organisms → cellular organisms → Bacteria	896
NAP1_1015850	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	878
NAP1_1015986	Not Available	875
NAP1_1016092	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales → Pelagibacteraceae → Candidatus Pelagibacter → unclassified Candidatus Pelagibacter → Candidatus Pelagibacter sp. TMED203	873
NAP1_1016361	All Organisms → Viruses → unclassified viruses → unclassified DNA viruses → unclassified dsDNA viruses → Prokaryotic dsDNA virus sp.	868
NAP1_1018757	Not Available	824
NAP1_1019196	All Organisms → Viruses → unclassified viruses → unclassified DNA viruses → unclassified dsDNA viruses → Prokaryotic dsDNA virus sp.	818
NAP1_1021599	All Organisms → cellular organisms → Bacteria	781
NAP1_1022222	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	773
NAP1_1025087	Not Available	738
NAP1_1025123	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales → Pelagibacteraceae → Candidatus Pelagibacter	737
NAP1_1025393	All Organisms → cellular organisms → Bacteria	734
NAP1_1026427	All Organisms → Viruses → unclassified viruses → Virus sp.	723
NAP1_1029012	Not Available	697
NAP1_1030925	Not Available	680
NAP1_1032430	Not Available	668
NAP1_1032606	Not Available	666
NAP1_1033249	Not Available	661
NAP1_1036959	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	634
NAP1_1042843	Not Available	597
NAP1_1045432	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales → Pelagibacteraceae	584
NAP1_1045799	All Organisms → Viruses → unclassified viruses → unclassified DNA viruses → unclassified dsDNA viruses → Prokaryotic dsDNA virus sp.	582
NAP1_1049898	Not Available	562
NAP1_1051032	Not Available	556
NAP1_1051387	Not Available	555
NAP1_1053019	Not Available	547
NAP1_1054790	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	540
NAP1_1055446	Not Available	538
NAP1_1055861	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium MarineAlpha5_Bin12	536
NAP1_1058428	Not Available	526
NAP1_1059858	All Organisms → cellular organisms → Archaea → Euryarchaeota → unclassified Euryarchaeota → Euryarchaeota archaeon	521
NAP1_1060568	Not Available	519
NAP1_1062825	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Cellvibrionales → Porticoccaceae → unclassified Porticoccaceae → Porticoccaceae bacterium	511
NAP1_1064474	Not Available	506
NAP1_1064696	Not Available	505

Sequences

Scaffold ID	Protein ID	Family	Sequence
NAP1_1001051	NAP1_10010511	F000754	SYEAKTNLQFTVNNAEFSRDALVSEKVTGEAFGWNGTGYVMNDMLTSGSVRNRPIITFTNTGSATADIDVAVFIGSQ*
NAP1_1001889	NAP1_10018892	F017320	MIMILKIVPNPGFCLINIHKKSTDTLIKKVAVPIDKLVVFDIPSARTDHGEFPVVDKIKRPSPNPKIARPKIKKKDVDNFGLKLKELSELQDTIGIFLIFRNIF*
NAP1_1001950	NAP1_10019501	F079298	LHSYTTINISNPDDNNGFEHLHAELCGTKYSDSISHTQKISDLLDKINTAIISEMAVDCVCCESLDITSLDLFNLTSNNFLLSKVSLTIDKNFYAPNVKTLIPYTKQVR
NAP1_1002813	NAP1_10028133	F033463	VLISTVYWLALYNGVLFLNLFVFVVLSIVYVYYCKWVNANYEHMFSKESVDEKLKDMNGFSRRIITGIWVSHFAFFFFGGISLGVSVPFIIYFNL*
NAP1_1002919	NAP1_10029193	F055643	MTTKELIELINSTQDGEIWLYDSKLRDHLATVEQALEEDLIHFIRADVGNSTTEFIRVSI*QNLITQLDYYYDYIRHTRTNRYGYIPRT*
NAP1_1003625	NAP1_10036251	F044950	AYRDQKDRPLYTEDVVDWFFQNELHYLKKFEGKPYAPEIIDIKNKKIYIKWYGKSCNQIIYANKPWPVPDWQQQIKDIILDQYNEGVYKLTMYPHCHYVDNNNQMKAIDWYGCVPVESPYIAEKWMQGIIHETAQFRLEETGAAVDSVLNLETMYKRSLSTHVKWGEENMNYIYREIFGEKHG*
NAP1_1005639	NAP1_10056392	F006685	MTEEKKTKGKAWRMREWGRAQYRNRQAKLRMDGESSKTEASKRMLRVMAPKLGKKVDDFMDTFGGSTEHTTPLFLTFVLDMCPYQIASLALQTFLDNLQFNLPVGRMAYKIGKAFENQARWDKALDTMHPSKLDLLAMDDRSKAMKLKQFYDYEDERFTLWDSKCKAGLGAWLLEEIRIETGLWVVDFATGRQKGHKAERIVRATNEFTDWVSRFDSWKETTRVFKMALPEEPVDWYGLVGGGYSVKHMPPQKLFTGKPVANFKPYESSYQHAMSALNKLQKTAWQINKDVLAITLKCWENKRVIGNIPNFGEIDEQPRYTGDCPHEFRAWKLKQKDIRTANESNSSKRYQT
NAP1_1006066	NAP1_10060661	F036279	MKGTRHSLKTLFIIFSFVGLQACSVPFANGVTGQDIIKIANAGKNIKNITKEGATEELITETKNVLRSIQNGGK
NAP1_1006066	NAP1_10060663	F034541	MKAVEAMTWEELESALTEYQVNGNGGGMRGKDIQILHSIEDEMSWRREQGYTDLLPREIEIELLEQGKIRERYL*
NAP1_1012370	NAP1_10123701	F005882	TGDLATTKKTIQTLNNRINGMHSPKIAEQELMMQLLQNQGQKQNGKIVGG*
NAP1_1015008	NAP1_10150082	F084269	MFRLKNKKQRKNSFIVLRAISRINKYEMNENDLYGAYNSLLNQQRSQSLTS*
NAP1_1015850	NAP1_10158501	F058929	HYIVKKNEIVTIYSVFLLDSLSTTSNISVAEHKVGVTADTQTSSKRLIK*
NAP1_1015986	NAP1_10159861	F077329	MIDRTMWFLYNRLGDSGRQAPSIDSISEMFFNYWKIMNAININTQTLSAIDIYNGLSNCYDNLAKSTARNLYEDGEVAANADYRVSYYEQNHDIYDVYANCVNLNEVLLEGADPEFDDTDSFREALDEVAYEDMEYEIESETFTLNEDTIEWYKTVHPSDDKIVNYMYDTGESLEWDDIQNFLYDKLNTIQNANADMHQSQIRKFMLDRLANQNINIIDCLEQTENGMKEVDPNTGELQD
NAP1_1016092	NAP1_10160922	F060815	MRDKIKKINELCRKDGIYKNDKGQSTVSLWSKIKYFRQVFGDELGIDTSVMEYEDYYICKCKIVAYDPERVLATGHHKQFKKRNATYIQGALPMSESFAISRALSFFGILDNDITSLEEYRSLNIPCTKEVKGAANGSTNKGVDQIINEFKKCRNIYEYRQVRKYNDPYIEHALTKHPSTYKAIMNVVENVEDKLNKQENI*
NAP1_1016361	NAP1_10163612	F003637	MAKVIAEKVQEQVQVDSPNMVEIKHTRTMQDASGNDVEVVDYTDVKSVDEAISQCEAHKTNLEAQLTECEAELAEYIAIRDAE*
NAP1_1018757	NAP1_10187572	F081896	LDRELLYEQSLQYYTDQNKIKKLKMEYKEYSFSNEIHSLSSMPELAIEEIIKINKRITDKTWGVILESEKVQDLNVYIAQMNKVQINSRKSNFFVVTDSHDIMLRLNDVFNWMNKIFYIVPNTYDLNIEKEYRPSINFHCLKHLEKHISTPGSSYSDMLKSIGGIQVTVPNSKRVFSFNCKRLVPQG*
NAP1_1019196	NAP1_10191962	F028038	LANLDFYNKEIENIQQQLIDKLDNLVIGLGRVTDTELMQIAKQIDFFAEMETLGFTKLMNRVGKTFDDEIARVFAELSKRELGQVSAASIDALRELKNFEMTYLTNGVRQYSDQLKTAMLRGIITGESNIQIMNNINTTFGVGTYISSSETSFLINDAFSRFSNASRAKAYEQFPEVRFQYIGPSDNKTRDVCQRALQEPPLTREEINALGYIDFTNRGG
NAP1_1021599	NAP1_10215994	F054892	MSKEIKQDEFKIVLEDGKEVNFDDLQDEQKIMVNQIRDLDMQLSRLNFQAQQLQAAKNHF
NAP1_1022222	NAP1_10222221	F040644	LKAVSQYTTLASGSETSVQFRGVAVELIDVPTSVTASGKVVQFSGISSGVDVHCTFKKKFGDVTNEASTLADIGLETEYEPIIMAGVAAQMIAGRDIPSATTEYITDAIQANVYQVGSSTNIRNALLQYQQVLIAQARKDLRARYPEPVSLNSVVYPSA*
NAP1_1025087	NAP1_10250871	F100002	MGDEPRSTPNGDLWGFWLEFDDGTKGVANGKSKAPRWAEVGATVEATDSTYKTPKGHTKWKISIPREIPKDSDGVTGYQSKDGTQTFYKKANYSNNGGGGSDKGREIAIQACINQASQVAAQDPTFKSSGYNEQFKYIVYSIAKDLLEVRDAIQEGRELAHEDAEAF*
NAP1_1025123	NAP1_10251233	F023136	MNVIDRKAIIRKDKNTIPNDFKLDFKFKICLVEIIRDAKIQN*VRKIIGRTKSGVTAKNLIKPGA*A
NAP1_1025393	NAP1_10253931	F057388	LNIFAGHQQMAVGSSSDFSSGTYFGVSKNIGFLFLNSPLNFGFQFSERGGSSIDLNDFLLDGNSSTDNSRLDVLMRHSYFDIFVNANVSLGNISFYLGPMVGINLSSQVSNVDDIILPAIYDFNPSDLEARQFDMGMNYGLTFHVNRFIGISLETYQGLSDKNEQEFTNYGLKLSIGL*
NAP1_1026427	NAP1_10264271	F002192	MYHLLLYCTFFIAILALFFGLYACGRVAKVQTAVKDLDWDAVANMTGDLATTKRTIQTLNNRINGMHSPKLQDQELMLQLLQQQGQQKNGKMVGG*
NAP1_1029012	NAP1_10290122	F001756	VIDNASRILELKRPRKKLCPKLEKNVNMKPNIITFKLKLLNILKNYEL*
NAP1_1030925	NAP1_10309252	F071273	VHNTIMQRATILAAGAVYDTGTKQDFILEGDFPGSDYVSEDGTVTGTFAQALVEDIINLGTVDSINFASGTVAATVKTTLKFA*
NAP1_1032430	NAP1_10324303	F063454	TIGGTMKQLELDLKIKGTSSFDDVPTLKQLMDRKKKRPKHLSHLSDKHYQLLKELHRGRI
NAP1_1032606	NAP1_10326062	F039819	MTINEKLSKINTTIEEIKKITDNLSNNNALELKIEEMTKEISKLKKGIGERIDELDQKLGEEDA*
NAP1_1033249	NAP1_10332491	F101092	MSKKKPNIITPFNDRERFKNLVQEVIEDTSIFSHVPDSISLSGVFFTLILSNKKFVFEDIKVDVDSDYVDVFLQGI
NAP1_1033249	NAP1_10332492	F002188	MAIKDLQKILKQVHEPDEYRLVPHNLNHQTYFIWKLENAKMKDLETFLRPYRKEHARFDIFINGQYILEKDYIKEQVNNDLHIKFLKSNFPYILEGDDDIKIEGDVDLV*
NAP1_1036959	NAP1_10369592	F051454	MTINEFRNKHYGRGGSTPPPPFTTYGGELGSTDAKGYSFVRDGSDVTGQFTNANESYALAA*
NAP1_1042843	NAP1_10428431	F064092	PKRVISMSSKKKILKEELSNKDLENIRLFIRYEVAQIMFDLYRKRKVWGA*
NAP1_1045432	NAP1_10454322	F018290	IERNGYQFTFTRLTPFLIQAELNGLAKISLHRHLGTMAYTVLNSDGSSQSNTVFQCDSVPRLL*
NAP1_1045799	NAP1_10457992	F021211	MAKEKNVDLRQEAETKMESLVEQHNTLVQEMQGANERLAEVKQMIVEHQGYMKGLDACKEDCEDK*
NAP1_1047047	NAP1_10470472	F031878	LEEAENIILGSKIYKIKPILHLKKYFLLGFGVEFILIFRQILISKYGKSSFKLFVDCGFDQSLAINMANKKINYLKLKSNSIILSKINNIAYKNTVLLNPSFNIVDCRNRKNINLKLKKLYSKEKK*
NAP1_1049898	NAP1_10498981	F024116	VNEDWKDYVSIIAFLVIVLGGLVLLGSCDSGWSVAGYEV*
NAP1_1051032	NAP1_10510322	F054890	MSREDAIRDMMDSMAKGNSNEVQTKFNSIMFDRASTAVNDYKQELAKSVFKNDDLQSMGLADGEERILEVDPAAQPEVVDTGDNNEDI*
NAP1_1051387	NAP1_10513871	F005130	VMAFNVQDFMSKNKFKLGKVTREVGDTPFKGGHNDIRKTNYEVKLTEDGKLDLYTHKKETK*
NAP1_1053019	NAP1_10530191	F020899	MKKYLILILLLLVAWQKDEIGIVEPEVIEYEMIFEESQSSVTDGQEYSFEISLEEEHQLILSKDGNVIAKESFLPTLGINTKTIYTKSLPIDLLKFELINPTGVIKTTFIQIY*
NAP1_1054790	NAP1_10547901	F022000	SNDSTWQLEVNAESGVGEESVQLSRVARYIVAKVVLKSANQITSPKFKAFKVRALARPELVVIQIPVNISDRVERPFRKPILVRNLGETIYQSLKDKEGNAVTLELYDPAEIVRGVVEKITYPIQSNPNVGSVTQYAILTVRGTRQQTFSQVTSGDIPGVKGFAIMRFG*
NAP1_1055446	NAP1_10554462	F035775	MARKVISVYVKPKRKSHPHSKNASVGQNKYKKPYKGQGR*
NAP1_1055861	NAP1_10558611	F018290	EVSVSREMMIERNGYQFTFTRLTPFLIQAELQGLAKISLHRHLGTMAYTTLNSDGSSQSNTVFQCDSVPRLL*
NAP1_1058428	NAP1_10584281	F029471	ADYSDNRLDSMHDVLDSVDVKAGVRALFDNVITPFAEHKDWTMLAEWNANSVIGCFQRHLEQCEASSDKTRDLMKNAIREDVGNEISMLNVDKLIFRRDAQDLNIKRAEMIVNELHLAYEVAFGKKFVPKAKASAKDVTKQAQMKEYNIARLKEAMKD*
NAP1_1059858	NAP1_10598581	F021544	MANFDLSKLMEGKNPQQVMLAETRELKGKWEQTGLLEGLG
NAP1_1060568	NAP1_10605681	F062276	MKNILCLKEIFKKREVSRDDVINVYDHIEDTITIRLLQGSNIDATQVALVSNVMSLAQSYNNKKFAIKLLEGALAEMQSDHFRETGNKLS*
NAP1_1062825	NAP1_10628252	F025718	MIKNDKKVNGFIAKVNIVDRKSGEVVAQNQILKCEHHDSIDALNRDLAKFGLPRKFEFIEWVA*
NAP1_1064474	NAP1_10644741	F042010	GENVVRAHGSIGNNERWKTPLGARLSRDDTVAKLKAFLG*
NAP1_1064696	NAP1_10646961	F084343	MTKEIDKKAIIKKDKNTIPNDLKFDLRFKTCFVEIISPAKIQN*VKKIIGIIKSGVTAKNLSKPGA*AKPTAVKTFLNGTLLCLSGNNFTPITNIKIAQINQVKIAVRPDIATAVLITVL