3300003553: Ammonia-oxidizing marine microbial communities from Monterey Bay, California, USA - Metatranscriptome CAN11_18_M0_10 (Metagenome Metatranscriptome)

Overview

Basic Information

• IMG/M Taxon OID: 3300003553
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0099541 | Gp0089011 | Ga0008454
• Sample Name: Ammonia-oxidizing marine microbial communities from Monterey Bay, California, USA - Metatranscriptome CAN11_18_M0_10 (Metagenome Metatranscriptome)
• Sequencing Status: Permanent Draft
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 20154891
• Sequencing Scaffolds: 11
• Novel Protein Genes: 14
• Associated Families: 12

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
Not Available	6
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	1
All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae	1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → Patiriisocius → Patiriisocius marinus	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Bacilli → Lactobacillales → Lactobacillaceae → Lacticaseibacillus → Lacticaseibacillus paracasei	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Marine Archaeal Communities From Monterey Bay, Ca, That Are Ammonia-Oxidizing
• Type: Environmental
• Taxonomy: Environmental → Aquatic → Marine → Oceanic → Unclassified → Seawater → Marine Archaeal Communities From Monterey Bay, Ca, That Are Ammonia-Oxidizing

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): marine biome → intertidal zone → sea water
• Earth Microbiome Project Ontology (EMPO): Free-living → Saline → Water (saline)

Location Information

• Location: Monterey Bay, California, USA
• Coordinates
  • Lat. (^o): 36.25
  • Long. (^o): -122.2099
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000075	Metagenome / Metatranscriptome	2622	Y
F000155	Metagenome / Metatranscriptome	1877	Y
F001293	Metagenome / Metatranscriptome	729	Y
F006548	Metatranscriptome	370	Y
F009426	Metagenome / Metatranscriptome	318	Y
F012678	Metagenome / Metatranscriptome	278	Y
F059360	Metagenome / Metatranscriptome	134	Y
F060579	Metatranscriptome	132	N
F078750	Metagenome / Metatranscriptome	116	N
F085780	Metagenome / Metatranscriptome	111	Y
F097458	Metagenome / Metatranscriptome	104	Y
F101265	Metagenome / Metatranscriptome	102	N

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0008454J51686_100758	Not Available	1153
Ga0008454J51686_101042	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	1110
Ga0008454J51686_101344	Not Available	545
Ga0008454J51686_102318	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae	770
Ga0008454J51686_103232	Not Available	533
Ga0008454J51686_105422	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → Patiriisocius → Patiriisocius marinus	1033
Ga0008454J51686_109747	Not Available	1031
Ga0008454J51686_111656	Not Available	1263
Ga0008454J51686_115344	Not Available	523
Ga0008454J51686_124297	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria	590
Ga0008454J51686_130863	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Bacilli → Lactobacillales → Lactobacillaceae → Lacticaseibacillus → Lacticaseibacillus paracasei	602

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0008454J51686_100758	Ga0008454J51686_1007582	F097458	HRSYKLPPIFLSLTFAALLPRRDIYALAFTLKLNLKHIISIDSWYKLLGSPILFDTYTLVVQRQNY*
Ga0008454J51686_100779	Ga0008454J51686_1007791	F000075	FTMKFALALVATVAANRYENMNEDELLVNLSSTLSSALDSEARGDGDAAVAKTAAIKNIQKSLTARILKRLDDGQPLVEVARKMKAIEGMQPQINDMERRLGIMQSVEPVLENAIKTLQKVVDVRGMGKK*
Ga0008454J51686_101042	Ga0008454J51686_1010422	F059360	MTIFKEVLVPANLVPAAAVIREGQALSVITGRTESVDCNISYMLKFKA*
Ga0008454J51686_101344	Ga0008454J51686_1013441	F101265	GNKISGLKLATDLRLKRTYHCRITDVGEDYDLRIIISKSIGVYIVKTTSSEIVEAN*
Ga0008454J51686_102318	Ga0008454J51686_1023182	F001293	MIRNSLICKLINVQPSMKENNEKKIKNEDEISKLTKAPPKDTAALDKRSVLAKVNSQGSGT*
Ga0008454J51686_103232	Ga0008454J51686_1032321	F009426	IKSQAKMEIKLAATKVNKNLKLLPNMTISEILYTIIFFMTTSPCVISAGAARETLFEGKADYCMIECE*
Ga0008454J51686_103579	Ga0008454J51686_1035791	F000155	EMKFTLALIAAVAATKYDHMTEDELLVSLSNTLSSALESEARGDGDAAVAKTAAIKNIQKSLTARILKRLDDGQPLVEVARKMKAIEGMQP*
Ga0008454J51686_104792	Ga0008454J51686_1047921	F060579	LEPNRNLTFAMLGLLAAVASFNAPTTMVGQSAVSSVARTDVSMSTKYTVAAGIAKKKNPKTGDSSNLKGYTVGSRAPDMAKNSGTTKAEQSIFDKMFGKAPTTDVKGAQRKTKRI*
Ga0008454J51686_105422	Ga0008454J51686_1054221	F078750	LFIMKNLLLLLIFISLFSCSPEETTQANNTEQNYTTTLSSFVLNDYLATPAIDVPLGTLFYQNVPYGPDQRQVIDIFLPPSASGFSVTQQDVVDYRDMILNIHDGDFKSGDKSAAYYADNEISAYLSNNIAFVSMNYRFLNTSEQNNKGVTTSFKDAENVFNFIRTHTNKLKINSNKIFIIGNGFAGSSITQYLLSQPFYGFKVKGISMNDPLSSLDFLDFNDTFSDFDFDLYSFVSEQDEQMIMELYGGIQFNQLESEDIIIKNRETASFTSAYDNFTGRVRISAIDYNVPYQTLENIKHLIRHQLHSIEIYNKATLQGLHVDAQILHLHMQNDQSELDFIL
Ga0008454J51686_109747	Ga0008454J51686_1097472	F097458	LRRSYKLPPISLSFAFAALLPRRGIYALAGTPKIDFQHAMPIDSRYELLGSPILVDTRTLVVRSQGSR*
Ga0008454J51686_111656	Ga0008454J51686_1116562	F085780	MRSKLKSLKIVQVLPNGCVHFDHLVYLKTYTRYNFSKKSLFFSLLDKKKLFFENSNFFYKKYRNQ
Ga0008454J51686_115344	Ga0008454J51686_1153441	F009426	KLKNANFSTATKVNKNVKLLLNMTFSEILYTIIFFMTTSPCVISAGAARETLFEGKADYCMIVCE*
Ga0008454J51686_124297	Ga0008454J51686_1242973	F012678	MLNQHSLEEIGDIYNLLEDIQKEYEEGIKPILIKNSPSRFKNPHTVPKLKKIQINRGLGLAA
Ga0008454J51686_130863	Ga0008454J51686_1308631	F006548	FRPTIAVACLSLGASINLEARSNNFLAASSETDQRDGFDLNLEVSAEVRETLQGLAMELLSANPVEGMASVRDGMKVVSGKMDLKSAVKAIDHKNLPADVQALVKTASSTTKADFDETSMAKARIALNDLVEKAWVELDDKIIECKEYQEMNRATFDQVVTDISRLVEQITDLERVETESLEGIAKMEMEIKSVEAELSK