3300003549: Ammonia-oxidizing marine microbial communities from Monterey Bay, California, USA - Metatranscriptome CAN11_08_M0_20 (Metagenome Metatranscriptome)

Overview

Basic Information

• IMG/M Taxon OID: 3300003549
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0099541 | Gp0089009 | Ga0008452
• Sample Name: Ammonia-oxidizing marine microbial communities from Monterey Bay, California, USA - Metatranscriptome CAN11_08_M0_20 (Metagenome Metatranscriptome)
• Sequencing Status: Permanent Draft
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 10680225
• Sequencing Scaffolds: 10
• Novel Protein Genes: 11
• Associated Families: 11

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
Not Available	5
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	1
All Organisms → cellular organisms → Bacteria	2
All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Bacillariophyta → Mediophyceae → Biddulphiophycidae → Biddulphiales → Biddulphiaceae → Biddulphia → Biddulphia tridens	1
All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Bacillariophyta → Coscinodiscophyceae → Thalassiosirophycidae → Thalassiosirales	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Marine Archaeal Communities From Monterey Bay, Ca, That Are Ammonia-Oxidizing
• Type: Environmental
• Taxonomy: Environmental → Aquatic → Marine → Oceanic → Unclassified → Seawater → Marine Archaeal Communities From Monterey Bay, Ca, That Are Ammonia-Oxidizing

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): marine biome → intertidal zone → sea water
• Earth Microbiome Project Ontology (EMPO): Free-living → Saline → Water (saline)

Location Information

• Location: Monterey Bay, California, USA
• Coordinates
  • Lat. (^o): 36.25
  • Long. (^o): -122.2099
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001488	Metagenome / Metatranscriptome	686	Y
F015413	Metagenome / Metatranscriptome	255	Y
F019484	Metagenome / Metatranscriptome	229	Y
F019658	Metagenome / Metatranscriptome	228	Y
F027998	Metagenome / Metatranscriptome	193	Y
F046638	Metagenome / Metatranscriptome	151	Y
F059360	Metagenome / Metatranscriptome	134	Y
F085780	Metagenome / Metatranscriptome	111	Y
F093912	Metagenome / Metatranscriptome	106	Y
F098669	Metagenome / Metatranscriptome	103	N

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0008452J51689_100029	Not Available	509
Ga0008452J51689_100386	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	1182
Ga0008452J51689_100497	Not Available	1768
Ga0008452J51689_102556	Not Available	550
Ga0008452J51689_104658	Not Available	1322
Ga0008452J51689_106407	Not Available	615
Ga0008452J51689_106882	All Organisms → cellular organisms → Bacteria	1588
Ga0008452J51689_106933	All Organisms → cellular organisms → Bacteria	611
Ga0008452J51689_111759	All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Bacillariophyta → Mediophyceae → Biddulphiophycidae → Biddulphiales → Biddulphiaceae → Biddulphia → Biddulphia tridens	854
Ga0008452J51689_111917	All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Bacillariophyta → Coscinodiscophyceae → Thalassiosirophycidae → Thalassiosirales	751

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0008452J51689_100029	Ga0008452J51689_1000292	F098669	METATRGRKQKWRLKEAEGLGRKRRIGEAEGREPHESDQGLDSGPGLNPGRKVRRIDQAMEGSPEIVPAKIRKKP
Ga0008452J51689_100386	Ga0008452J51689_1003862	F059360	MTLFKEVLVPANLVPAAAVIREGQALSVITGRTESVDCNISYMLKFKA*
Ga0008452J51689_100497	Ga0008452J51689_1004972	F019484	PNTMYSFFYFLTILGGSLKKIAKKITTNVPISKKVYTNASII*
Ga0008452J51689_102556	Ga0008452J51689_1025561	F101265	GGNKISGLKLATDLRLKRTYHCRITDVGQDYDLRIIISKSIGVYIVKTTS*
Ga0008452J51689_104658	Ga0008452J51689_1046582	F085780	MRSKLKSLKIVQVLPNGCVHFDHLVYLKTYTRYNFSKKSLFFSLLDKKKLFFENSNFFYKKYR
Ga0008452J51689_106407	Ga0008452J51689_1064071	F015413	LESTELEKQVNDLLNTKFEQPEFEQLLPKGLLGKDMLIGSAGTALAVQMGNIVGKFLPIGQLPSGTSSILAGVLMQKFLGKNGNLKKLSEGIIQGGIATAMTPFVSGLIPAQFQQVEKQVETATEPINPTMQGVMW*
Ga0008452J51689_106882	Ga0008452J51689_1068823	F019658	MKASKIKNQNYKLFKYNLLKLQIYSNQYTFTLNKFSNSMLEQIEAYLKQVLKIIFEYHV*QFKILFIGFPVICKMKQMKLIHFTNHNFIPEKS*VSGVFRNRLSILTYLNLIQSQSFSKSLKLLLTIKTKPHLVVVFNQKVEHSTINEFYKAGIPILSFN*NSFDRFKIAYQTLGNFNFIERNIKLTFFFLFYSLLKKTPLTKRL
Ga0008452J51689_106933	Ga0008452J51689_1069333	F027998	DELTNTRAAEIGITTITTANITLLKNALNEGVILITDLTF*
Ga0008452J51689_111759	Ga0008452J51689_1117591	F001488	VSLFLQEHLNHTLKPIKKQNVKEKLNMARLELTLNFPKNFEIKTFNVKSEKKLSPLAKLILQSVQFKHFYYVRDDIFYLLKSNPIERDFLLQALYSIVISLQNNLSINFFDMWIYEIYINKVSINNKFMNQKFQNLESGEYITIKLAYGNNVSQEKK*
Ga0008452J51689_111917	Ga0008452J51689_1119171	F046638	LMIKTLKNSIFKNLVVLIHGPIILLNNPNKKLTFKELESINPFISLLGFRLNNKIYSRKQIKNLKKMSYIENISIFHNSIKTFTKLPY*
Ga0008452J51689_111917	Ga0008452J51689_1119174	F093912	FFYSAGMFSLQKRQKTRQPKAIITILRALLSKSKSFKIKPVAVHFNNLFFNHQSYIFKKLKQKVFIKLVTSYSYRPHNGCRLKKKKRIKIRTRTRKL*