3300003455: Marine sediment microbial communities from Douglas Channel, Canada, that are oil-degrading - Sample S16-KH04A

Overview

Basic Information

• IMG/M Taxon OID: 3300003455
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0111425 | Gp0104229 | Ga0059314
• Sample Name: Marine sediment microbial communities from Douglas Channel, Canada, that are oil-degrading - Sample S16-KH04A
• Sequencing Status: Permanent Draft
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 50593188
• Sequencing Scaffolds: 5
• Novel Protein Genes: 6
• Associated Families: 6

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
Not Available	4
All Organisms → cellular organisms → Bacteria → Nitrospirae → Nitrospira → Nitrospirales → unclassified Nitrospirales → Nitrospirales bacterium	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Marine Sediment Microbial Communities From Douglas Channel, Canada, That Are Oil-Degrading
• Type: Environmental
• Taxonomy: Environmental → Aquatic → Marine → Neritic Zone → Unclassified → Marine Sediment → Marine Sediment Microbial Communities From Douglas Channel, Canada, That Are Oil-Degrading

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): marine biome → marine neritic zone → marine sediment
• Earth Microbiome Project Ontology (EMPO): Free-living → Saline → Sediment (saline)

Location Information

• Location: Douglas Channel, British Columbia, Canada
• Coordinates
  • Lat. (^o): 53.6667
  • Long. (^o): -129.1333
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000352	Metagenome / Metatranscriptome	1247	Y
F011397	Metagenome / Metatranscriptome	291	Y
F055778	Metagenome / Metatranscriptome	138	Y
F063162	Metagenome / Metatranscriptome	130	Y
F094911	Metagenome	105	Y
F105215	Metagenome / Metatranscriptome	100	Y

Associated Scaffolds

Scaffold	Taxonomy	Length
KH04A_1081757	Not Available	506
KH04A_1227178	Not Available	526
KH04A_1265764	Not Available	507
KH04A_1278928	Not Available	526
KH04A_1382986	All Organisms → cellular organisms → Bacteria → Nitrospirae → Nitrospira → Nitrospirales → unclassified Nitrospirales → Nitrospirales bacterium	518

Sequences

Scaffold ID	Protein ID	Family	Sequence
KH04A_1078809	KH04A_10788092	F063162	MTPFRMTGYSTWNDIMKNAKITDIQDPMLDMEISKWEFEEIYRDIVDELQGNDECEESYIDYYFAKNPMKSYVLSFKSDKERNAFYDIGLKKKSVLS
KH04A_1081757	KH04A_10817572	F000352	MRNIKLTESDCIFVHAVLIMYAQQTPGMDADDKTEIREVAAKFR*
KH04A_1227178	KH04A_12271781	F011397	VKDFDLLKRTYPTSQKDRYCDGYKYILENTTPRERRRWKIEKKKLQRVIKSGEKYIYQVAKETGEFKYMSMSFSNYAIIRKHIFGMDDE*
KH04A_1265764	KH04A_12657642	F055778	MFSNVDLPEPELPTINTISPCLIEKDTLSSALTLLSPSP*
KH04A_1278928	KH04A_12789281	F094911	CKTSEFFEKSPLSAAKKHPDFQVTSCHHFDTTNINFAYIESE*
KH04A_1382986	KH04A_13829862	F105215	MYIKTGPKNIEGSSRTLLFHQDPDIRLDAAIQLGGDTAGVSEQRLALEALTTALQDPCSTVQEAVLQSLMRMSGKNG*