3300002885: Marine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - MetaT SI075_100m_B (Metagenome Metatranscriptome)

Overview

Basic Information

• IMG/M Taxon OID: 3300002885
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0046785 | Gp0054864 | Ga0005267
• Sample Name: Marine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - MetaT SI075_100m_B (Metagenome Metatranscriptome)
• Sequencing Status: Permanent Draft
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Published?: Y
• Use Policy: Open

Dataset Contents

• Total Genome Size: 48975819
• Sequencing Scaffolds: 20
• Novel Protein Genes: 22
• Associated Families: 20

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
Not Available	13
All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrosopumilales	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Methylococcales → Methylococcaceae → unclassified Methylococcaceae → Methylococcaceae bacterium	1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium	2
All Organisms → Viruses → unclassified viruses → Circular genetic element sp.	1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → unclassified Flavobacteriales → Flavobacteriales bacterium	1
All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Prymnesiales → Prymnesiaceae → Haptolina → Haptolina ericina	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Marine Microbial Communities From Expanding Oxygen Minimum Zones In The Northeastern Subarctic Pacific Ocean
• Type: Environmental
• Taxonomy: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From Expanding Oxygen Minimum Zones In The Northeastern Subarctic Pacific Ocean

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): marine biome → coastal inlet → sea water
• Earth Microbiome Project Ontology (EMPO): Free-living → Saline → Water (saline)

Location Information

• Location: British Columbia, Canada
• Coordinates
  • Lat. (^o): 48.7299
  • Long. (^o): -123.5699
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F005848	Metagenome / Metatranscriptome	388	Y
F006550	Metagenome / Metatranscriptome	370	N
F012639	Metagenome / Metatranscriptome	279	Y
F015413	Metagenome / Metatranscriptome	255	Y
F015441	Metagenome / Metatranscriptome	254	Y
F021318	Metagenome / Metatranscriptome	219	Y
F042625	Metagenome / Metatranscriptome	158	Y
F045800	Metagenome / Metatranscriptome	152	Y
F058538	Metagenome / Metatranscriptome	135	N
F061863	Metagenome / Metatranscriptome	131	Y
F066454	Metagenome / Metatranscriptome	126	N
F070560	Metagenome / Metatranscriptome	123	N
F077771	Metagenome / Metatranscriptome	117	N
F081198	Metagenome / Metatranscriptome	114	N
F083743	Metagenome / Metatranscriptome	112	N
F091394	Metagenome / Metatranscriptome	107	N
F098669	Metagenome / Metatranscriptome	103	N
F099485	Metagenome / Metatranscriptome	103	Y
F100304	Metagenome / Metatranscriptome	102	Y
F101265	Metagenome / Metatranscriptome	102	N

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0005267J43198_1000039	Not Available	515
Ga0005267J43198_1001635	Not Available	540
Ga0005267J43198_1001893	All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrosopumilales	821
Ga0005267J43198_1002175	Not Available	1301
Ga0005267J43198_1003661	Not Available	1698
Ga0005267J43198_1003984	Not Available	1044
Ga0005267J43198_1005754	Not Available	1028
Ga0005267J43198_1005755	Not Available	1675
Ga0005267J43198_1007560	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Methylococcales → Methylococcaceae → unclassified Methylococcaceae → Methylococcaceae bacterium	803
Ga0005267J43198_1008526	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium	942
Ga0005267J43198_1010438	All Organisms → Viruses → unclassified viruses → Circular genetic element sp.	750
Ga0005267J43198_1010758	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → unclassified Flavobacteriales → Flavobacteriales bacterium	784
Ga0005267J43198_1010787	Not Available	1254
Ga0005267J43198_1010892	Not Available	561
Ga0005267J43198_1015666	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium	547
Ga0005267J43198_1017958	Not Available	1119
Ga0005267J43198_1020714	Not Available	572
Ga0005267J43198_1025272	Not Available	994
Ga0005267J43198_1026011	Not Available	737
Ga0005267J43198_1052426	All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Prymnesiales → Prymnesiaceae → Haptolina → Haptolina ericina	618

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0005267J43198_1000039	Ga0005267J43198_10000391	F098669	METATRGRKQKWRLKEAEGLGRKWRIEETERRELHESDQGLDSGHGLNPGRKVRRIDQAMEGSPEIVPAKIRKKPC
Ga0005267J43198_1001635	Ga0005267J43198_10016351	F101265	GGNEISGLKLAIVLRLKRNYHCRSTDVGEDYDLRVIFSKSIGGYIVKTSSSEIVETN*
Ga0005267J43198_1001893	Ga0005267J43198_10018931	F099485	QIIRNWQHSPSKTQVASTPVKAVSKSLQQSQTFTHEDLMGLSWMLSEEGD*
Ga0005267J43198_1002175	Ga0005267J43198_10021753	F070560	MIMTNQTQQFKQLVSSAKPEAQIPKAESMVTVSSLMTTADHAQFSKGLSSIFVDVPHHLSGESQIFSVRPQQMVPRSAVIQRDESSQLVGISAVSGG*
Ga0005267J43198_1003661	Ga0005267J43198_10036613	F021318	MAKVFNTKKADYNGMQLWLNPVDKTVYATEGAPTHSFAEANGYAIYDFSKHFTNQKNAKDDFGNGAYSHDAFVDSEFKSLAEDYVSDVKAGGRQRQAALRSNTNAAVDIVNVWETVLGKQDRTYAGKNLAKEIAVPNLLISIDTATKFSGMTQLDEGQLGQLKELSYTRSNFEANKYGLKFVIHEEARLKNVHNVLQDSIQVAANKVEQRQ
Ga0005267J43198_1003984	Ga0005267J43198_10039843	F042625	MTSKEERDQLWKDLKASWAVLKRDSGADEVAKGKAKEKINEIQDALKLDKTDWNQPRSGPPGSHLTKAGASPNPSNNALVEKILGTVLDMKRELNEDLVKINQKLTTLEGKVSEGMC
Ga0005267J43198_1005754	Ga0005267J43198_10057541	F006550	YNGMQLWLNPVDKTVYASPSAPTYGFTESGAYPIYDYKAHQSGMKTAKDTFGNDSYVHDAFVDAEFKALAEDYVSDVKAGGRQRMAALRSNTNSAVDIVNVWETVLGKQDRTYAGKNLAKEIAVPNLLISIDTATKFSGMTQLDEGQLSQLKELTYTRQNFEASKYGLKFVIHEEARLKNVHNVLQDSIQVASNKVEQRQSFDVVSLADSSLTAKAAAGAWDTFVSSTDRSTANPLLDLGTSQLLIEGSGVGGKLNRIGMHPLDFAKYMGNTFIRGVASTSPSEVSFEPGTRELPGFPGAGLVLDNAIRQGDVYCVDTEKEPTIALFQGPQRIGSAHDEETG
Ga0005267J43198_1005755	Ga0005267J43198_10057553	F021318	MAKVFNTKKADYNGMQLWLNPVDKTVYASPSAPTYGFTESGAYPIYDYKAHQSGMKTAKDTFGNDSYVHDAFVDAEFKALAEDYVSDVKAGGRQRMAALRSNTNSAVDIVNVWETVLGKQDRTYAGKNLAKEIAVPNLLISIDTATKFSGMTQLDEGQLSQLKELTYTRQNFEASKYGLKFVIHEEARLKNVHNVLQDSI
Ga0005267J43198_1007560	Ga0005267J43198_10075602	F058538	NRRRLHDILNWVNQKYHLEYEVVQKNRDVFYVIFHDLNIKQTVAIQKQIKGIAQPEHFDMH*
Ga0005267J43198_1008526	Ga0005267J43198_10085262	F015413	MESHDLEKQVESLLATPQFEQPQFEQLIPKGILGKDMLIGSAGTALSVQVGNIVGKFLPLGQLPVGTSSILAGILLQKFGGSNSMLKKLSEGIIQGGIATAMTPFTSGLIPSFNQEVKEVAQELNPLVKGVMW*
Ga0005267J43198_1008526	Ga0005267J43198_10085263	F012639	MSSNNSGLVLNCTAQYAAAAPVATVLSVTMQTSPTVTGVTELQVPLTENWIATDVYILAAAGAGSATVVAPVITMDKNRGRTLVQTPPLNAMLITSNTRPRFSPQPIGFEGGSIIRMFATSTVLNG
Ga0005267J43198_1010438	Ga0005267J43198_10104382	F005848	MALPVQRTYTGTVAALNAPVFMQDNQTLQNNFLTLTPNVLQDVVMNPDLAATQLYTFTLVKNGNATSVRAFSSAISPTTAGRVPIGPVSMSSGSYQWQVTQTAGAVASPTILARYASPL
Ga0005267J43198_1010758	Ga0005267J43198_10107582	F066454	MSIRFDVLILINSGVTDRSEIVERLGINIRSVSNSIRFLIKEGWVEYSRESISVVGGDSFRITQVGIDKIKASTVDEYRQSPKRKIPDYEVMRSHLGVGDNVSRSELINLWNELTDYYLPYEGDKEFTGRRGLSSL*
Ga0005267J43198_1010787	Ga0005267J43198_10107871	F081198	MTNETSKIEEKVKVTIETDGEVEVGKAEANTEVAPVVEAPAPATAAPETTSEKVAERIEKSNADTLKAVIETVSDAWKPKSEVAESTSDAGHVEEAFTDDQATEFMDKLFESGYNKLVLEKEGWIQTHTSQKQSGNGEVQEAVSTSGTIPGVKTASNISIQLGAKTAIPIRQYGQFQAVPVGQNTARFYRITVPDAGAITESPTTDITASTHTLTSIDVTCSIRGWRQTVEKAELEDYPASFLNAIRETARLESIRDEHKLILQDLASTARDFGGVTTAPYHIGGSDGAATSNPTEEDADGELDEDGLTFSKRYLEELGQDTSPGNLIAFISPRAFEALISSTSLSEYTQIGNASVTRLGQMERLYGIDIIVTNELLSANNASRNLVCVKGKAWGLASQRKMEIEFQKNI
Ga0005267J43198_1010892	Ga0005267J43198_10108921	F061863	PLKIDTNLLIQTSIAACLVIFGVVTKNSFEQLGFPNHPIGKPLGMGMFIMGWIYIAYIFSINKPNKLAFILPSIGIVIAVMMMKQYMVKKQTPPMVFPVIFALSWIILGLNAGNHLSGNQKYLGLFASFLVLLSMMQILPYQRTHNIVDGPGQPLFVIAWGILIMLNSNR*
Ga0005267J43198_1015666	Ga0005267J43198_10156662	F012639	MSANNSGIVLTCSAAFAAAAPVATVISGTMQTSPTVTAVTELQVPLTENWIATDMYILAAAGAGTPTVINPVISLDKNRGRQLVQTVPLSAMLITNNTRPRFSPNPIGFEGGSIIRTFAT
Ga0005267J43198_1017958	Ga0005267J43198_10179581	F083743	TEMIATSEKRWGDVKNTCDAEKKDVNDWINNPVVNVEKMTKRRLAAEKKLLAALMSRVEGLRNFIARIKLTRKRLRKHIIAVNALFKLKFDENMANVGAATQVLADIGHLKLAPYNPKLNKIKQFKSFSEDTTSLIQLTTKALKGKTNCADKDECSGATKLAFQAYRKGLELNKAMGVNFEKERKVLGGMRDAIRQLLDKKIAKLNKLLAQIERIKGAMADDDYDAAKKSLGEHLKILARSCAGMGAFEKQLKQKTTKLLGAMDNKGELPAKAPEVKADATGTEQH*
Ga0005267J43198_1020714	Ga0005267J43198_10207141	F045800	LNRTPVEDCLEVKEYLDEMIEYYRYTSSPVLAERRKTYKDIKIALFGEDVDDGDTGTKSTRAWFY*
Ga0005267J43198_1023946	Ga0005267J43198_10239461	F100304	IYHIMKSVIAFGLVAAASGISLTPDNWDEAVAGKTVLVKFQAPW*
Ga0005267J43198_1025272	Ga0005267J43198_10252722	F015441	MSYVYNIMEAVDTIGLQYKSIKLPYELINIILEYDGRIKYKYKQPNSIDYHKYVNIIHKNDSRYETIKPVIVKKIYIMKYELTTSPNDSSFYFQFTFDNQPMVVLCYDYNSYNNQFEICYTDMKGSGHVLGSDQTRHICI*
Ga0005267J43198_1026011	Ga0005267J43198_10260111	F077771	KNKMYYTYYFQGMVFEKEVIEKDPKKAFLSYSEKFKNIDYLNGFHKEYVDESLSELNERLHFEIIDGEAEAYDDETGEEIYKSIFRMELKDEGYGKKNYVSYEKYSPMLLLFDWLQNVIPANRYLNNWGGTAHIYSDQDWSSFESFMINSDGVLKESMLTTNSAYDKEIKPGKNVEFLYPDVKGEIK*
Ga0005267J43198_1052426	Ga0005267J43198_10524261	F091394	DIKDHDYRQAGGDLQQVMDQLSQWTQKHACTSDFCYIVVGAFQFLGDIKGSVKQCESDFEGGWGDFKGAVDEFADSHHSIFHWKHNKDAIRAGVKKIGDGMHLVAKGVSDCHVEEFADLLAKLAIKLGIVPEVGWIEEILHILIDGVKIENEIGDACDDYGNKNWVGFGYNVVRLVKTLL