3300002861: Peat soil microbial communities from Weissenstadt, Germany - Metatranscriptome 43 (Metagenome Metatranscriptome, Counting Only)

Overview

Basic Information

• IMG/M Taxon OID: 3300002861
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0053071 | Gp0061196 | Ga0006842
• Sample Name: Peat soil microbial communities from Weissenstadt, Germany - Metatranscriptome 43 (Metagenome Metatranscriptome, Counting Only)
• Sequencing Status: Permanent Draft
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 2831572
• Sequencing Scaffolds: 43
• Novel Protein Genes: 48
• Associated Families: 41

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
Not Available	33
All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia → Isosphaerales → Isosphaeraceae → Aquisphaera → Aquisphaera giovannonii	3
All Organisms → cellular organisms → Bacteria	2
All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia → Isosphaerales → Isosphaeraceae → Aquisphaera	3
All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Opitutae → Opitutales → Opitutaceae → Lacunisphaera → Lacunisphaera limnophila	2

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Peatlands Soil Microbial Communities From Germany And Austria, That Are Sulfate Reducing
• Type: Environmental
• Taxonomy: Environmental → Terrestrial → Soil → Unclassified → Unclassified → Peatlands Soil → Peatlands Soil Microbial Communities From Germany And Austria, That Are Sulfate Reducing

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): terrestrial biome → peatland → peat soil
• Earth Microbiome Project Ontology (EMPO): Free-living → Non-saline → Soil (non-saline)

Location Information

• Location: Germany: Weissenstadt
• Coordinates
  • Lat. (^o): 50.13
  • Long. (^o): 11.88
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000203	Metagenome / Metatranscriptome	1619	Y
F000344	Metagenome / Metatranscriptome	1257	Y
F000734	Metagenome / Metatranscriptome	915	Y
F000800	Metagenome / Metatranscriptome	886	Y
F001953	Metagenome / Metatranscriptome	612	Y
F003505	Metagenome / Metatranscriptome	482	Y
F004372	Metagenome / Metatranscriptome	441	Y
F005410	Metagenome / Metatranscriptome	401	Y
F007311	Metagenome / Metatranscriptome	353	Y
F007465	Metagenome / Metatranscriptome	350	Y

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0006842J43188_100044	Not Available	594
Ga0006842J43188_100047	Not Available	512
Ga0006842J43188_100070	Not Available	841
Ga0006842J43188_100076	Not Available	820
Ga0006842J43188_100078	Not Available	589
Ga0006842J43188_100106	Not Available	748
Ga0006842J43188_100113	Not Available	597
Ga0006842J43188_100205	Not Available	545
Ga0006842J43188_100211	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia → Isosphaerales → Isosphaeraceae → Aquisphaera → Aquisphaera giovannonii	821
Ga0006842J43188_100354	Not Available	587

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0006842J43188_100044	Ga0006842J43188_1000442	F007695	VKRRDPWHRANAPPKAVADPELDGEDAKKRSHRRVFIWFASRWRNHQPKRAEKPHSKSSGRKALDGPATRPKTPLAVENGVGKLAAPARVAPNASPGKREWRTPIPH
Ga0006842J43188_100047	Ga0006842J43188_1000471	F098815	GSK*PIEQLALPTGMRGQSLACSVAEALPSCSPQRPLARHGSVRQSSLALLPARSHRLGTAFRSPATTVLFREPPWRGQRSWPIPSALVLNLSSSPFGLELPPSAAFFTPPGAFRAQNPLPSSKPRTLKRPSNFRSPSGLSSLRIEALGQRLSLRSLPLCPARFPFAPRK
Ga0006842J43188_100049	Ga0006842J43188_1000491	F100491	VPSDRLAACSPTGMHGQNVASGIGET*APCSPPLVLANRGSVRRCVSAVHPGRSPFLDATFRSTAPRTGLATDPRNCVNVPGLHLRNDPQI*SDPFGATLPPPFSLFVTSRGAIYARNPLPDPTSGLIARIRTSAPLRDLSIPRDQSPQPGFEL*NLPLQVARSSFAPRSAVTILVITQRYGSSFQIRYFLPGSLSFE
Ga0006842J43188_100070	Ga0006842J43188_1000701	F011719	FSRSLKELRWAAAVNRLKPSVSKIIPGDWGMAGSGWLAQPLLSRIVRSGGGGRIHQFLWRRSRAVSKREKGTER*GAMRSRSESSQVARAGFELGRIAVTQRVSGCYCASARAGGSGGLRKEVSHKKDAERRDKVSARTGKDTWPRQGP*KPSEKSAMLKTIPLTCGRKAT*ELRGETRGTGPTRC*
Ga0006842J43188_100076	Ga0006842J43188_1000762	F032561	SGVSILTISQYSRCCILRLPQRPTLQLSLAVASSWLHRLENPRLSSAVLHSGSTGGQLPGSDRRCIDQLDRLRTSGLRRLFRSSDRPVAIPFDSRRTILPPARPMINLRLASTPSFGSAGSTSGFRRLLLLPPGWLRLRFSPAVSPSGFTGCESFNFR*
Ga0006842J43188_100078	Ga0006842J43188_1000781	F005410	FQVTYPTIQLPSGMHGRSCAIRVNVRLGPLLPATEFRPSRINAPDRASRLTPDRNPPLGTTFRSLETTARYRATFPRSKLLAYPFGSTLRSRRTRSITPLLHAVRLAPNSANSTRATRCPVPSKRPRLFSNSPLPLGVFTPLPIKAFKLTTSREAHRIETPDLPRSPLRPVFNSSAADQCSGLVTSRSAYCLTNLL
Ga0006842J43188_100093	Ga0006842J43188_1000931	F070926	VPSDPLNSSLSSRHARPEHGMRENCGAFSSAPRIGFWPMRINAREMTRSFSARSSDLGTAFYSPAATVPFRRPPRQDRRSWPIPSIQLRTLPQARSVWNSLPLPHSAVRGRSALPTRCPIPDSKFPDVHRLPLPFGIFQSLRIKALCRRQSLGKLTLADSPIFLRSPTAQLSLIVLAAGSSFRIRYRPPGSLLSEPLGTSSPES
Ga0006842J43188_100106	Ga0006842J43188_1001063	F029356	MTTLILNPRGKDGGRRPARVAGRGEVKTRKLDRLPGESPGTEVRKTKAEAKAVHLLEWSL
Ga0006842J43188_100113	Ga0006842J43188_1001131	F074507	MELVKARAVVGERKAVTSGGPVPKRSKGCGAQRGIDPGPGENRQWGVRLRCARCFGMQCSEPSMPAVDKAGNQVTWN
Ga0006842J43188_100177	Ga0006842J43188_1001772	F000203	WGMGVRQALFPMPTLGAPLSEAVSFPTPFSTASGVFGLVAGPSNAFRR*
Ga0006842J43188_100205	Ga0006842J43188_1002052	F074507	MESVKAGAVVGERKAVTSGGPVLKRSKGCGVQQGVDPGPGENGHWGAKLRCVRRFGMRCSVPSMPVVNKAGNQVTWN
Ga0006842J43188_100211	Ga0006842J43188_1002111	F059236	PRQVSFGKEEETRTLKPFVETLRVRIPPGKAGPAARSESCVVVGRPILRSVDSEVKGRVIEPRKYKTPGAFVVDTGGGRVRQLTHGPLSLPDPAGVEEHGQ*
Ga0006842J43188_100354	Ga0006842J43188_1003541	F059150	RFEEQRAERKRSEPGTLIRSRNYSNRAGGGERRAIGRIREVSLSVSGRVDTLIRKGAKGPEGEWRSGADRDCGTEVE*
Ga0006842J43188_100362	Ga0006842J43188_1003621	F009513	MFDMILENYRKATESTMKLQQDVLRNWTMQWPQMFGAQTFGLPFLGGPASGSAMPGAAWLEQLRDAQKKWGETVTDMLNKHRESLDVQYKAGIRTIEEAFKVGEAKDPQQFRRLTEELWKHSFECLKTVAESQTRDVQAAMEKFYEVASKSATGLKV*
Ga0006842J43188_100362	Ga0006842J43188_1003623	F007465	MPSTESKTKPSSSEATDPSTMMASFWTQWLEQSSRGTQALLEAMQTVGDPQQIQRRWLDAVSQSLDDFMRTPTFLELLGNNLKTITDLKGMQDQVIQDTARHFGLPLAADITGLFERLHSTEQNILNRLQAIEERLKAIETKH*
Ga0006842J43188_100389	Ga0006842J43188_1003891	F010404	MQPFTLLQRRSALRQIPAAGSTLLAYIFETALEFQLARSASRSRPRLAFFRLTGLDHCESPVANFLS*
Ga0006842J43188_100456	Ga0006842J43188_1004561	F076696	SRRPSGSARSPAVMPGRNAAGMPLADSFSCSPPQLLFCVGLTLQSASADRHTRSLCLATAFRSPPRLRPFGRLHEGSMFPACRFGSLPNPASGPFGSPLPASLRFCLAYAGPIHAAFPLPDADLDFPDRYSASAPLQDVSRRFNASASASLEGSPLPATRFPFAPRCRLRFTIARFGSSFPVRLRLLGLLFLL
Ga0006842J43188_100477	Ga0006842J43188_1004772	F003505	MSSDKSSEGRSSAADPARDFLEFWTNYFEQTAIQTRILLEGMQGGKSLDHKSLDQLHTQGLESLTQCLDGFMRTPAFLEVLKQSLKRMIDLKQMQDQMSQSVAQQTGLPLAADVTGVFERVHSAEQTILKQLAKLDDRLKAIEKTLNSGPAEKNPKRKRATTKEDIGDDAPNDPAD*
Ga0006842J43188_100479	Ga0006842J43188_1004791	F074509	LITHSTAGCCILRLPQRLTSSFRWRHILWLRRLENLRLAPTALQSGSTGGQLSRLGSAFHRSARPVANLRFASAVARFRSTGGDPSDLRRTILPPARPATNFRLAPGVDPSARLVSSLRLSPAAVATCQLALTAAATSSLRLLSPVCHTGGEPPTRIGCSSSSFTGFDSPDLRRMFLPPAGPLMHPLLQPNLASAAEPPMSIPYPPVRAPSGSASLTTSDLRRLLQCLARPAIPLR
Ga0006842J43188_100505	Ga0006842J43188_1005051	F004372	MILTDSATSHRVPGPVLSRDGDRFAAWLADLTWAKLFPEGRDLYYDGECPDKFTEAIREEFGFDPSADPLWGKWVEGDHGEPGFISYGFHCPAKHIDAIYAMHGSHRFPGRVLILCR*
Ga0006842J43188_100557	Ga0006842J43188_1005571	F082272	VKPEAQAAEGSLDAPEDTKADASRKLFSWKIREDARAGGNGILIDGFAGDARFS*
Ga0006842J43188_100650	Ga0006842J43188_1006501	F044936	RRTVSLAGSSGSGAVIRRAVIRDYFNAAGSRRKIGLLAKASFSGWNRVERYEPEGSRGPEGEWKPEDNGRVHESDLATGLAC*
Ga0006842J43188_100702	Ga0006842J43188_1007021	F016371	MSFSLRTTILATGCILAIGTSAAQAQMPRVFYYSAPGNYATTQGTVNIPAAGYYYNVPLYTVPAPVNPAPAQGSPYSYSSFYYPRGGASTEGGGAYEGGDERPSGAYVSGDNEDSPDW*
Ga0006842J43188_100726	Ga0006842J43188_1007261	F001953	MKKLGLLLLPILAITLMLGGNAFAQPAPGDGSYYFVTYYSNANTSGAPDGTLRIINDGDQATASPEGVENGTLWAAIYVFDDSQEMQTCCACVITSDGLLSESVNKELVNLNINITGRGEVQRGTIKVISSSNGNEFSPAPLTGLRGWMTHIQATTNGIPTTPGGPDGSKGPWFVTETALADSNLSGTELANLGETCSFGRTLGSGYGFCLCTPEDYDF*
Ga0006842J43188_100757	Ga0006842J43188_1007571	F010528	MFEQIFDEYRRAVDSSFKMQQEMYRQWMNGWPVKWPDVTKAVDRGVVKDQICSYQKKWSQTLAETMEKHREALNQQYKSGIDTIASTFRMTEARTPEEYWRLTQEFWRKSIDFYKTTFEAQSKYVEGLAQMWLEMVTRGKV*
Ga0006842J43188_100758	Ga0006842J43188_1007582	F000344	MRPKHLHAAESGVGKHTARESERVQACAAGKEHVTNAHPH
Ga0006842J43188_100804	Ga0006842J43188_1008041	F076696	VVMPGRNAAGMSVANSLSCSPPQRLGCVALTLQSASANCHTRSLCLATAFRSPPRLRPFGRLHEGSVFPACRFDSYPNPAPRPFGSPLPASLRFCIACAGPIHAAFPLPDADLDFPDRSSAFAPLWDSSLRFNAPADTNHGGSPSPATRFPFAPRCQLRFTFARFGSSFPVRFRLLGLLFLL
Ga0006842J43188_100808	Ga0006842J43188_1008081	F042779	MTTICVSQETIASLENLDKPLDFCDESGRLLGSFIPEMAMQELRPIAEAEGDLRAVEEQLGPEMGVYGFETDLE*
Ga0006842J43188_100823	Ga0006842J43188_1008231	F088037	FQVTHLTAALHPGMPG*RHRKQNRWAFCFSAPRFACFSRNESVPQSATCVAVLFGADISKGLSLAPGGFLLPSCRWKVNAPGYFLQRPAEASIKPVRLTASPLSSVCPVLGGIIAISPLPDFVPAFLAATRSPLPSGDFYVPLRIAAFDSACRSKAHLFELPDFPSLPAGHSLLNDQPPDHRSRIATSHQVRLFRE
Ga0006842J43188_100858	Ga0006842J43188_1008581	F009513	MFDMILENYRKATESTMKLQQDVLRTWTMQLPQMFGAQTFGVPFMGGPASTGGPASGSVMPGAAWLGQLSDIQKKWGETVTDMLNKHRESLDAQYKAGIRTIEEAFKVGEAKDPEQFRRLTEELWKHSLECLKTVAEAQTRDVQAAMQKFYEVASKSASGLKV*
Ga0006842J43188_100947	Ga0006842J43188_1009471	F031390	MPLASSDWAAVNGPQDNSSSDEQLVGLARASQEASLQHDRQWIASLGRKWQNHHGQDLRLRYDTGKTLNDRLRPPTVRLPRGEGIMTLLVDETGLSESSLNRMRWFAYRFPSFEEFKASQLGVDSWEKVCVTLVGISQKEKAAEAAANGSAIKSSAPSKGISGILRSLKVVAQAMPKEQVPVDEDVIDDLETGLRKFRRALQKCTGLTVTISIA*
Ga0006842J43188_100967	Ga0006842J43188_1009672	F000734	MERSIRGGHAATAGPVKTFREVGGVTNDAADLWMKGNLRVKRRDPWHWANAPSKAAADPALSGGDAERKS*
Ga0006842J43188_101042	Ga0006842J43188_1010421	F000800	MEVFLESEEQMGRNKQKGRGKRQRPAGPPAPSPAVVADQTGRLLAEREREWLERLTTNPASFAAVELEVHEQTRRQADLYVAGLLAKASEQPETTPHVDKVIAEAEVPLRPVEKKDAPW*
Ga0006842J43188_101055	Ga0006842J43188_1010551	F021059	APVAETAQVLENFVPLYMKGIEVIAELQKKSLEIAAQQNTEWVAAGKKAVVRFIPAAQVNPVFDLAAQAFDTVLEGQKDAIDLMLEQNQTVAGFAKEGIESVANLTNGLTALFQKSVEYSVTMQKKALELAAEQNKSAYDTVTRQFGFSGSPVETFQRSLDALMETQKKVLDIAAKPLKTVA*
Ga0006842J43188_101067	Ga0006842J43188_1010671	F010528	MFEQIFDEYRKAVDSSFKMQQELYRQWMNGWPVKPPDVEKAVDRGAFQDQIRAHQKKWSQTLAECMEKHRESLNKQYKSGIDAIASAYRTTEAQTPEEYWRLTQEFWRKSIDSYKTTFEAQSKYVEGLAQMWLEMIT
Ga0006842J43188_101178	Ga0006842J43188_1011781	F082272	VKPEAQAAEGSLDAPEDAKADASRKLLSWKIPEDARAGGNGILIDGFAGDARFG*
Ga0006842J43188_101302	Ga0006842J43188_1013021	F009513	ATESTMKLQQDVLRNWTMQWPQMFGAQTLGLPFMGGPASGSAMPGAAWLEQLSNAQKKWGETVTDMLNKHRESLDAQYKAGIRTIEEAFKVGEAKDPQQFRRLTEELWKHSFECLKTVAEAQTRDVQAAMQKFYEVASKSTSGLKV*
Ga0006842J43188_101311	Ga0006842J43188_1013111	F016476	MGFCSLQHIRNPRSTFREPSQPAKFRLQGLATLLTVCSLESRAGFVSHRRRSWDSPFGGVLSLQASAAFRPGRTHVPLAQRYFRRRSVRPARRASVSGFKPVGTALRPCGGLTRQSPAPPLGFAPLGFTCEDLAPDSSGTPLTCLASPDDYSPSRPTPQSVDQPSPCLARPVPKHRPAEATLVGFLHLPVPDHLSSPVPGLWNSPFVASCITADSPTIFGHRKNPAEAVQDRPWVPSIAT
Ga0006842J43188_101410	Ga0006842J43188_1014101	F008605	PGFNVTIFSIDWERPTVNRAWEFGNPEGWNFIPGFFANHISGSARNGYVNFENVGAEIDLGAYNNGTLADWLGDEPSAVFASSISTTGLFQNQFENNVTAIGGGFPINNIAGNMFDANFTWFGSEVRRQGDIGGIQGANGPTSGGSPFLAVPSYGSFHNVNGLFNWPHQLEPTAFKPGEYDFG
Ga0006842J43188_101636	Ga0006842J43188_1016362	F007311	VPSCWPARFALAPVTDYSVIDAWRPRLRADCSALGFPRPALDTDLTRRPTLNALRLPRIAPRLTPCAHADRGSLRVTDCSVIQHFGELRPACGLLRPRCMAFRALLGLLLARRLPLRAAHGLLRARRLALHAGLRIAPYSDISRPGAGPRIAPCPAPEFRTGLRLL*
Ga0006842J43188_102547	Ga0006842J43188_1025471	F103993	MSSQTPAPSRASSQLVTGLKSPGVLGLHATPVSVASQSARCVAASNVFG
Ga0006842J43188_102692	Ga0006842J43188_1026921	F020652	SK*PVDSSFSGRHARPEHGIRIRL*RKPFAPRNRFYPATDQCSGARPLFPDPVETRSSMRPFALRQRRSIFRSATATGSTLPTCIFDAIPKSPPGPFGSALPPSVRLFVAARGTIHARNPLPSPISEFLVCDQAFTPLQDLSIPRAHSAQLDSRRRSLPLRVARFSFAPRCARNNHLFTSASDHRSGPATSRQ
Ga0006842J43188_102697	Ga0006842J43188_1026972	F076695	AGRRTPMSGKRGEAPELPLRTWLEIARLQRQLLAIFEEAGPKISDGVDRARVWALREELIGILGRELNLKRKLSLSSLDQQRLGPQQANRGTP*
Ga0006842J43188_102724	Ga0006842J43188_1027241	F020134	MTPARGAGDIAYPAVARLKGMVAPAAAVLSPVARIIPAAL
Ga0006842J43188_102761	Ga0006842J43188_1027611	F031390	MPSILTEVAAQIEPHDDASVDQQAVGLARASEEARFQHDREWVAGLGRRWKHHQGQDLRLRFDTGKTLNDRLGPPTSRLPRGEGVMALLAEETGLSESSLNRMRWFGYRFSTFDVFRASQPDVTSWEQVCLLLVELSQKEKSDEAARSNSAAQETEPSKEVQTLLRVLKGVAKAVPQKQIPVDEDVFDDIEAGLRKFRRALKKCTG
Ga0006842J43188_103115	Ga0006842J43188_1031151	F062514	WRERSEANCLTSGCKSRRRRSPCGAVVISGSLRGDSWAGSPDVQAPGGQVGLEPPWSGQHRGQAIRRAVAKANGLNAEMGPRTKLIQAEYWRCQEFLPSTRWPVPMRKDGAVPVSDLPAEVEGGNPGEPSSKSSEGLESRQEDP*
Ga0006842J43188_103784	Ga0006842J43188_1037842	F026773	LKLALLTLLLVALVAIPAMAQTVYDNGPINGNTDAWTINFGFTVSDTFNVVNSGTTVTGASFGMWLFAGDTLTSAELSITSGEAGGTSYFDQTVNFTTGGCTSNQYGYNICQE
Ga0006842J43188_104594	Ga0006842J43188_1045941	F094237	MVQILGFSGNSTDRPHASTVEILSVVGPIAGSGTLEAVKAQHV*