Metagenome / Metatranscriptome Family F103993

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Overview

Basic Information
Family ID	F103993
Family Type	Metagenome / Metatranscriptome
Number of Sequences	101
Average Sequence Length	48 residues
Representative Sequence	VPSRTPAPSQASFQVVTGLKLPGVLGLHATPVAVASQSARCVAASNVV
Number of Associated Samples	85
Number of Associated Scaffolds	101

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Unclassified
% of genes with valid RBS motifs	100.00 %
% of genes near scaffold ends (potentially truncated)	99.01 %
% of genes from short scaffolds (< 2000 bps)	73.27 %
Associated GOLD sequencing projects	83
AlphaFold2 3D model prediction	No

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Unclassified (99.010 % of family members)
NCBI Taxonomy ID	N/A
Taxonomy	N/A

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil (36.634 % of family members)
Environment Ontology (ENVO)	Unclassified (25.743 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (68.317 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Fibrous	Signal Peptide:	Yes	Secondary Structure distribution:	α-helix: 0.00% β-sheet: 18.75% Coil/Unstructured: 81.25%
Feature Viewer

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Phylogeny

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	99.01 %
All Organisms	root	All Organisms	0.99 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	99.01 %
cellular organisms	root	All Organisms → cellular organisms	0.99 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	99.01 %
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	0.99 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	99.01 %
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	0.99 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	99.01 %
unclassified Acidobacteria	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria	0.99 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	99.01 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	0.99 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300000339\|actLayA2DRAFT_102839	Not Available	2663	Open in IMG/M
3300001808\|JGI20218J20341_1002052	Not Available	606	Open in IMG/M
3300002861\|Ga0006842J43188_102547	Not Available	1093	Open in IMG/M
3300002875\|Ga0006800J43185_101381	Not Available	2925	Open in IMG/M
3300003293\|Ga0006843J48913_102595	Not Available	2917	Open in IMG/M
3300003297\|Ga0006818J48916_102877	Not Available	2931	Open in IMG/M
3300004468\|Ga0068977_1003181	Not Available	2876	Open in IMG/M
3300004470\|Ga0068967_1001338	Not Available	2689	Open in IMG/M
3300004554\|Ga0068959_1001295	Not Available	2903	Open in IMG/M
3300004604\|Ga0068943_1001821	Not Available	2889	Open in IMG/M
3300010854\|Ga0126360_1089220	Not Available	2012	Open in IMG/M
3300010864\|Ga0126357_1249601	Not Available	1006	Open in IMG/M
3300010876\|Ga0126361_11292717	Not Available	517	Open in IMG/M
3300011021\|Ga0138529_130960	Not Available	1194	Open in IMG/M
3300011029\|Ga0138551_141969	Not Available	2902	Open in IMG/M
3300011041\|Ga0138591_159495	Not Available	2411	Open in IMG/M
3300011058\|Ga0138541_1043861	Not Available	2937	Open in IMG/M
3300011061\|Ga0138534_1060257	Not Available	848	Open in IMG/M
3300011076\|Ga0138574_1144945	Not Available	2991	Open in IMG/M
3300011108\|Ga0138601_111754	Not Available	845	Open in IMG/M
3300011110\|Ga0138578_1232340	Not Available	754	Open in IMG/M
3300016700\|Ga0181513_1218775	Not Available	1138	Open in IMG/M
3300016701\|Ga0181509_1094754	Not Available	1089	Open in IMG/M
3300016702\|Ga0181511_1023385	Not Available	3023	Open in IMG/M
3300016705\|Ga0181507_1187248	Not Available	2932	Open in IMG/M
3300019155\|Ga0184568_110072	Not Available	1509	Open in IMG/M
3300019157\|Ga0184573_111609	Not Available	1342	Open in IMG/M
3300019162\|Ga0184597_129745	Not Available	3520	Open in IMG/M
3300019173\|Ga0184575_120251	Not Available	523	Open in IMG/M
3300019180\|Ga0184578_111711	Not Available	1054	Open in IMG/M
3300019181\|Ga0184594_124808	Not Available	3519	Open in IMG/M
3300019189\|Ga0184585_102182	Not Available	1781	Open in IMG/M
3300019241\|Ga0187793_1150516	Not Available	1292	Open in IMG/M
3300019251\|Ga0187795_1148332	Not Available	724	Open in IMG/M
3300019264\|Ga0187796_1364960	Not Available	819	Open in IMG/M
3300019273\|Ga0187794_1521376	Not Available	2909	Open in IMG/M
3300019275\|Ga0187798_1039253	Not Available	2914	Open in IMG/M
3300019284\|Ga0187797_1006841	Not Available	647	Open in IMG/M
3300022498\|Ga0242644_1000180	Not Available	2951	Open in IMG/M
3300022498\|Ga0242644_1012744	Not Available	775	Open in IMG/M
3300022499\|Ga0242641_1000072	Not Available	3501	Open in IMG/M
3300022499\|Ga0242641_1004364	Not Available	1075	Open in IMG/M
3300022500\|Ga0242643_101236	Not Available	1354	Open in IMG/M
3300022501\|Ga0242645_1001246	Not Available	1484	Open in IMG/M
3300022502\|Ga0242646_1016133	Not Available	672	Open in IMG/M
3300022505\|Ga0242647_1006209	Not Available	973	Open in IMG/M
3300022505\|Ga0242647_1022128	Not Available	644	Open in IMG/M
3300022508\|Ga0222728_1003996	Not Available	1659	Open in IMG/M
3300022512\|Ga0242676_1004394	Not Available	1086	Open in IMG/M
3300022512\|Ga0242676_1010677	Not Available	835	Open in IMG/M
3300022513\|Ga0242667_1036438	Not Available	581	Open in IMG/M
3300022522\|Ga0242659_1072703	Not Available	643	Open in IMG/M
3300022527\|Ga0242664_1000331	Not Available	3519	Open in IMG/M
3300022527\|Ga0242664_1071406	Not Available	671	Open in IMG/M
3300022528\|Ga0242669_1001581	Not Available	2131	Open in IMG/M
3300022530\|Ga0242658_1093564	Not Available	710	Open in IMG/M
3300022532\|Ga0242655_10001391	Not Available	3377	Open in IMG/M
3300022708\|Ga0242670_1020953	Not Available	781	Open in IMG/M
3300022714\|Ga0242671_1058308	Not Available	658	Open in IMG/M
3300022715\|Ga0242678_1001827	Not Available	1730	Open in IMG/M
3300022715\|Ga0242678_1001856	Not Available	1721	Open in IMG/M
3300022715\|Ga0242678_1041333	Not Available	641	Open in IMG/M
3300022715\|Ga0242678_1061375	Not Available	565	Open in IMG/M
3300022716\|Ga0242673_1002854	Not Available	1782	Open in IMG/M
3300022717\|Ga0242661_1000449	Not Available	3526	Open in IMG/M
3300022717\|Ga0242661_1105198	Not Available	594	Open in IMG/M
3300022721\|Ga0242666_1059950	Not Available	819	Open in IMG/M
3300022721\|Ga0242666_1164517	Not Available	550	Open in IMG/M
3300022724\|Ga0242665_10106074	Not Available	840	Open in IMG/M
3300023654\|Ga0247535_103880	Not Available	516	Open in IMG/M
3300023675\|Ga0247533_100257	Not Available	1631	Open in IMG/M
3300030762\|Ga0265775_104908	Not Available	760	Open in IMG/M
3300030805\|Ga0265756_110700	Not Available	592	Open in IMG/M
3300030806\|Ga0265731_100332	Not Available	1148	Open in IMG/M
3300030806\|Ga0265731_100648	Not Available	942	Open in IMG/M
3300030806\|Ga0265731_101539	Not Available	728	Open in IMG/M
3300030806\|Ga0265731_103761	Not Available	551	Open in IMG/M
3300030811\|Ga0265735_100402	Not Available	1326	Open in IMG/M
3300030815\|Ga0265746_1006808	Not Available	1210	Open in IMG/M
3300030832\|Ga0265752_101588	Not Available	887	Open in IMG/M
3300030834\|Ga0265738_102026	Not Available	765	Open in IMG/M
3300030835\|Ga0265725_100548	Not Available	958	Open in IMG/M
3300030863\|Ga0265766_1006933	Not Available	752	Open in IMG/M
3300030863\|Ga0265766_1016113	Not Available	583	Open in IMG/M
3300030873\|Ga0265751_106305	Not Available	698	Open in IMG/M
3300030875\|Ga0265727_100405	Not Available	1083	Open in IMG/M
3300030888\|Ga0265769_119804	Not Available	528	Open in IMG/M
3300030913\|Ga0265759_100286	Not Available	1648	Open in IMG/M
3300030913\|Ga0265759_100464	Not Available	1389	Open in IMG/M
3300030913\|Ga0265759_111250	Not Available	514	Open in IMG/M
3300030941\|Ga0265737_100039	Not Available	3503	Open in IMG/M
3300030963\|Ga0265768_108697	Not Available	633	Open in IMG/M
3300030982\|Ga0265748_103958	Not Available	671	Open in IMG/M
3300031010\|Ga0265771_1008610	Not Available	718	Open in IMG/M
3300031041\|Ga0265755_100630	Not Available	1516	Open in IMG/M
3300031042\|Ga0265749_104041	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	548	Open in IMG/M
3300031043\|Ga0265779_104217	Not Available	759	Open in IMG/M
3300031231\|Ga0170824_127585820	Not Available	3520	Open in IMG/M
3300031866\|Ga0316049_119348	Not Available	545	Open in IMG/M
3300031872\|Ga0316033_104727	Not Available	767	Open in IMG/M
3300032515\|Ga0348332_10477705	Not Available	576	Open in IMG/M

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	100.00%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	95.05%
Aquatic	Environmental → Aquatic	4.95%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	94.06%
Freshwater	Environmental → Aquatic → Freshwater	4.95%
Plant Litter	Environmental → Terrestrial → Plant Litter	0.99%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	88.12%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	5.94%
Wetlands	Environmental → Aquatic → Freshwater → Wetlands	4.95%
Unclassified	Environmental → Terrestrial → Plant Litter → Unclassified	0.99%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	55.45%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	31.68%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	5.94%
Bog	Environmental → Aquatic → Freshwater → Wetlands → Bog	3.96%
Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment	0.99%
Permafrost	Environmental → Terrestrial → Soil → Unclassified → Permafrost	0.99%
Unclassified	Environmental → Terrestrial → Plant Litter → Unclassified → Unclassified	0.99%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	36.63%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	30.69%
Peatlands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Peatlands Soil	15.84%
Peatland	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Peatland	5.94%
Peatland	Environmental → Aquatic → Freshwater → Wetlands → Bog → Peatland	3.96%
Boreal Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Boreal Forest Soil	2.97%
Wetland	Environmental → Aquatic → Freshwater → Wetlands → Sediment → Wetland	0.99%
Soil	Environmental → Terrestrial → Soil → Unclassified → Permafrost → Soil	0.99%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Forest Soil	0.99%
Plant Litter	Environmental → Terrestrial → Plant Litter → Unclassified → Unclassified → Plant Litter	0.99%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300000339	Permafrost microbial communities from permafrost in Bonanza Creek, Alaska - Active layer cDNA A2 Metatranscriptome	Environmental	Open in IMG/M
3300001808	Wetland microbial communities from Twitchell Island in the Sacramento Delta, sample from surface sediment Feb2011 Site L1 Bulk Metatranscriptome (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300002861	Peat soil microbial communities from Weissenstadt, Germany - Metatranscriptome 43 (Metagenome Metatranscriptome, Counting Only)	Environmental	Open in IMG/M
3300002875	Peat soil microbial communities from Weissenstadt, Germany - Metatranscriptome 1 (Metagenome Metatranscriptome, Counting Only)	Environmental	Open in IMG/M
3300003293	Peat soil microbial communities from Weissenstadt, Germany - Metatranscriptome 44 (Metagenome Metatranscriptome, Counting Only)	Environmental	Open in IMG/M
3300003297	Peat soil microbial communities from Weissenstadt, Germany - Metatranscriptome 19 (Metagenome Metatranscriptome, Counting Only)	Environmental	Open in IMG/M
3300004468	Peat soil microbial communities from Weissenstadt, Germany - Metatranscriptome 74 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300004470	Peat soil microbial communities from Weissenstadt, Germany - Metatranscriptome 59 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300004554	Peat soil microbial communities from Weissenstadt, Germany - Metatranscriptome 51 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300004604	Peat soil microbial communities from Weissenstadt, Germany - Metatranscriptome 31 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300010854	Boreal forest soil eukaryotic communities from Alaska, USA - W4-3 Metatranscriptome (Eukaryote Community Metatranscriptome)	Environmental	Open in IMG/M
3300010864	Boreal forest soil eukaryotic communities from Alaska, USA - W3-5 Metatranscriptome (Eukaryote Community Metatranscriptome)	Environmental	Open in IMG/M
3300010876	Boreal forest soil eukaryotic communities from Alaska, USA - W5-5 Metatranscriptome (Eukaryote Community Metatranscriptome)	Environmental	Open in IMG/M
3300011021	Peat soil microbial communities from Weissenstadt, Germany - Metatranscriptome 7 (Metagenome Metatranscriptome) (version 2)	Environmental	Open in IMG/M
3300011029	Peat soil microbial communities from Weissenstadt, Germany - Metatranscriptome 32 (Metagenome Metatranscriptome) (version 2)	Environmental	Open in IMG/M
3300011041	Peat soil microbial communities from Weissenstadt, Germany - Metatranscriptome 17 (Metagenome Metatranscriptome) (version 2)	Environmental	Open in IMG/M
3300011058	Peat soil microbial communities from Weissenstadt, Germany - Metatranscriptome 22 (Metagenome Metatranscriptome) (version 2)	Environmental	Open in IMG/M
3300011061	Peat soil microbial communities from Weissenstadt, Germany - Metatranscriptome 12 (Metagenome Metatranscriptome) (version 2)	Environmental	Open in IMG/M
3300011076	Peat soil microbial communities from Weissenstadt, Germany - Metatranscriptome 59 (Metagenome Metatranscriptome) (version 2)	Environmental	Open in IMG/M
3300011108	Peat soil microbial communities from Weissenstadt, Germany - Metatranscriptome 77 (Metagenome Metatranscriptome) (version 2)	Environmental	Open in IMG/M
3300011110	Peat soil microbial communities from Weissenstadt, Germany - Metatranscriptome 65 (Metagenome Metatranscriptome) (version 2)	Environmental	Open in IMG/M
3300016700	Metatranscriptome of peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin17_30_metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300016701	Metatranscriptome of peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin10_30_metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300016702	Metatranscriptome of peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin11_30_metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300016705	Metatranscriptome of peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin06_30_metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300019155	Spruce litter microbial communities from Bohemian Forest, Czech Republic ? CLI1 metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300019157	Spruce litter microbial communities from Bohemian Forest, Czech Republic ? CLU3 metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300019162	Spruce rhizosphere microbial communities from Bohemian Forest, Czech Republic ? CZU3 metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300019173	Spruce litter microbial communities from Bohemian Forest, Czech Republic ? CLE2 metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300019180	Spruce litter microbial communities from Bohemian Forest, Czech Republic ? CLA2 metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300019181	Spruce rhizosphere microbial communities from Bohemian Forest, Czech Republic ? CZI3 metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300019189	Soil microbial communities from Bohemian Forest, Czech Republic ? CSU3 metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300019241	Metatranscriptome of tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0116_SJ02_MP02_10_MT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300019251	Metatranscriptome of tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0116_SJ02_MP15_10_MT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300019264	Metatranscriptome of tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0116_SJ02_MP15_20_MT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300019273	Metatranscriptome of tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0116_SJ02_MP02_20_MT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300019275	Metatranscriptome of tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0216_BV02_MP05_20_MT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300019284	Metatranscriptome of tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0216_BV02_MP05_10_MT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300022498	Metatranscriptome of forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Native-BW-H-32-O (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300022499	Metatranscriptome of forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Native-BW-C-14-O (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300022500	Metatranscriptome of forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Native-BW-H-26-O (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300022501	Metatranscriptome of forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Native-BW-C-7-O (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300022502	Metatranscriptome of forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Native-BW-C-19-O (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300022505	Metatranscriptome of forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Native-BW-C-12-O (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300022508	Metatranscriptome of forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Native-BW-C-19-M (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300022512	Metatranscriptome of lab incubated forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-7-O (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300022513	Metatranscriptome of lab incubated forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-26-O (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300022522	Metatranscriptome of forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Native-BW-H-11-O (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300022527	Metatranscriptome of forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Native-BW-H-4-O (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300022528	Metatranscriptome of lab incubated forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-17-O (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300022530	Metatranscriptome of forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Native-BW-C-30-O (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300022532	Metatranscriptome of forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Native-BW-C-4-M (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300022708	Metatranscriptome of lab incubated forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-30-O (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300022714	Metatranscriptome of lab incubated forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-19-O (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300022715	Metatranscriptome of lab incubated forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-4-O (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300022716	Metatranscriptome of lab incubated forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-12-O (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300022717	Metatranscriptome of forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Native-BW-H-11-M (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300022721	Metatranscriptome of forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Native-BW-C-4-O (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300022724	Metatranscriptome of forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Native-BW-H-17-M (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300023654	Metatranscriptome of spruce litter microbial communities from Bohemian Forest, Czech Republic - CLU5 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300023675	Metatranscriptome of spruce litter microbial communities from Bohemian Forest, Czech Republic - CLI5 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300030762	Metatranscriptome of rhizosphere microbial communities from Maridalen valley, Oslo, Norway - NZA1 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300030805	Metatranscriptome of soil microbial communities from Maridalen valley, Oslo, Norway - NSA2 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300030806	Metatranscriptome of plant litter microbial communities from Maridalen valley, Oslo, Norway - NLE2 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300030811	Metatranscriptome of plant litter microbial communities from Maridalen valley, Oslo, Norway - NLA1 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300030815	Metatranscriptome of soil microbial communities from Maridalen valley, Oslo, Norway - NSU2 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300030832	Metatranscriptome of soil microbial communities from Maridalen valley, Oslo, Norway - NSE4 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300030834	Metatranscriptome of plant litter microbial communities from Maridalen valley, Oslo, Norway - NLA5 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300030835	Metatranscriptome of plant litter microbial communities from Maridalen valley, Oslo, Norway - NLU1 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300030863	Metatranscriptome of rhizosphere microbial communities from Maridalen valley, Oslo, Norway - NZU2 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300030873	Metatranscriptome of soil microbial communities from Maridalen valley, Oslo, Norway - NSE2 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300030875	Metatranscriptome of plant litter microbial communities from Maridalen valley, Oslo, Norway - NLU4 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300030888	Metatranscriptome of rhizosphere microbial communities from Maridalen valley, Oslo, Norway - NZU6 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300030913	Metatranscriptome of soil microbial communities from Maridalen valley, Oslo, Norway - NSA6 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300030941	Metatranscriptome of plant litter microbial communities from Maridalen valley, Oslo, Norway - NLA4 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300030963	Metatranscriptome of rhizosphere microbial communities from Maridalen valley, Oslo, Norway - NZU5 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300030982	Metatranscriptome of soil microbial communities from Maridalen valley, Oslo, Norway - NSU5 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300031010	Metatranscriptome of rhizosphere microbial communities from Maridalen valley, Oslo, Norway - NZE2 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300031041	Metatranscriptome of soil microbial communities from Maridalen valley, Oslo, Norway - NSA1 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300031042	Metatranscriptome of soil microbial communities from Maridalen valley, Oslo, Norway - NSU6 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300031043	Metatranscriptome of rhizosphere microbial communities from Maridalen valley, Oslo, Norway - NZA6 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300031231	Coassembly Site 11 (all samples) - Champenoux / Amance forest	Environmental	Open in IMG/M
3300031866	Metatranscriptome of soil microbial communities from Bohemian Forest, Czech Republic ? CSU5 (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300031872	Spruce litter microbial communities from Bohemian Forest, Czech Republic ? CLU2 metaT (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300032515	FICUS49499 Metatranscriptome Czech Republic combined assembly (additional data)	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
actLayA2DRAFT_1028391	3300000339	Soil	VPSRTPAPSQALFQIVTGLKLPGLLGLQATPVAIASQSARCVA
JGI20218J20341_10020521	3300001808	Wetland	MSSRTPAPSRASLQMMTGLKPPGVLGLHATPVAVASQSARCIAASSVVGVAAV
Ga0006842J43188_1025471	3300002861	Peatlands Soil	MSSQTPAPSRASSQLVTGLKSPGVLGLHATPVSVASQSARCVAASNVFG
Ga0006800J43185_1013811	3300002875	Peatlands Soil	MSSQTPAPSRASSQLVTGLKSPGVLGLHATPVSVASQSARCVAASNVFGV
Ga0006843J48913_1025951	3300003293	Peatlands Soil	MSSQTPAPSRASSQLVTGLKSPGVLGLHATPVSVASQSARCVAASNVFGVA
Ga0006818J48916_1028771	3300003297	Peatlands Soil	MSSQTPAPSRASSQLVTGLKSPGVLGLHATPVSVASQSARCVAASNVFGVAAVRG
Ga0068977_10031811	3300004468	Peatlands Soil	MSSQTPAPSRASSQLVTGLKSPGVLGLHATPVSVASQSARCV
Ga0068967_10013381	3300004470	Peatlands Soil	MSSQTPAPSRASSQLVTGLKSPGVLGLHATPVSVASQSAR
Ga0068959_10012954	3300004554	Peatlands Soil	MSSQTPAPSRASSQLVTGLKSPGVLGLHATPVSVASQSARCVA
Ga0068943_10018216	3300004604	Peatlands Soil	MSSQTPAPSRASSQLVTGLKSPGVLGLHATPVSVASQSARCVAAS
Ga0126360_10892201	3300010854	Boreal Forest Soil	VPSRTPAPSQASFQRITGLKPPGVLGLHATPVAVASQSARCVAASNVVSVA
Ga0126357_12496011	3300010864	Boreal Forest Soil	VPSRTPAPSQALFQVVTGLKLPGLLGLQATPVAVASQSARCVAASNVFGV
Ga0126361_112927172	3300010876	Boreal Forest Soil	VPSRTPAPSQALFQVVTGLKLPGLLGLQATPVAIASQSARCVAASNVVGV
Ga0138529_1309601	3300011021	Peatlands Soil	VSSRTPAPSQASFQRITGLKPPGVLGLHATPVAVASQSARCVVASTVVS
Ga0138551_1419691	3300011029	Peatlands Soil	MSSQTPTPSRTSSQLVTGLKSPGVLGLHATPVSVASQSARCVAASNVFG
Ga0138591_1594951	3300011041	Peatlands Soil	MSSQTPAPSRASSQLVTGLKSPGVLGLHATPVSVASQSARCVAASTVFGVA
Ga0138541_10438611	3300011058	Peatlands Soil	MSSQTPAPSRASSQLVTGLKSPGVLGLHATPVSVASQSARCVAASNVFGVER
Ga0138534_10602571	3300011061	Peatlands Soil	VSSRTPAPSQASFQRITGLKPPGVLGLHATPVSVASQSARCVAASNVFGV
Ga0138574_11449451	3300011076	Peatlands Soil	MSSQTPAPSRASSQLVTGLKSPGVLGLHATPVSVASQSARCVAASNVFGATLWLGWR*
Ga0138601_1117541	3300011108	Peatlands Soil	VSSRTPAPSQASFQRITGLKPPGVLGLHATPVSVASQSARCVAASNVF
Ga0138578_12323401	3300011110	Peatlands Soil	VSSRTPAPSQASFQRITGLKPPGVLGLHATPVSVASQSARCVAASNVFG
Ga0181513_12187751	3300016700	Peatland	MSSRTPAPSRASFQVVTGLKFPGVHGLHATPVAVASQSARGVAPSNVVGVA
Ga0181509_10947541	3300016701	Peatland	MSSRTPAPSRASFQVVTGLKFPGVHGLHATPVAVASQSARGVAPSNVV
Ga0181511_10233851	3300016702	Peatland	MSSRTPAPSRASFQVVTGLKFPGVHGLHATPVAVASQSARGVAPSNVVG
Ga0181507_11872481	3300016705	Peatland	MSSRTPAPSRASFQVVTGLKFPGVHGLHATPVAVASQSARGVAPSNVDGV
Ga0184568_1100722	3300019155	Soil	VPSRTPAPSQALFQVVTGLKLPGLLGLQATPVAVASQSARCIAASNVVG
Ga0184573_1116091	3300019157	Soil	VPSRTPAPSQALFQVVTGLKLPGLLGLQATPVAVASQSARCIAASNVVGV
Ga0184597_1297451	3300019162	Soil	VSSRTPAPSRASFQIMTGLKLPGVLGLHATPVAVASQSARCVAASNVVSVA
Ga0184575_1202511	3300019173	Soil	VSSRTSAPSRASFQLVTGLKPPGVLGLHATPVAVASQSARCIAASNVVG
Ga0184578_1117111	3300019180	Soil	VPSRTPAPSQALFQVVTGLKLPGLLGLQATPVAVASQSARCVAASNVVG
Ga0184594_1248081	3300019181	Soil	VSSRTPAPSRASFQIMTGLKLPGVLGLHATPVAVASQSARCVAASNVVS
Ga0184585_1021821	3300019189	Soil	VSSRTPAPSRASFQIMTGLKLPGVLGLHATPVAVASQSARCVAASNVVSV
Ga0187793_11505162	3300019241	Peatland	MSSRTPAPSRASFQLVTGLKSPGVPGMHATPVAVATQSARCVAASN
Ga0187795_11483322	3300019251	Peatland	MSSRTPAPSRASFQLVTGLKSPGVPGMHATPVAVATQSARCVAASNVSGV
Ga0187796_13649601	3300019264	Peatland	MSSRTPAPSRASFQLVTGLKSPGVPGMHATPVAVATQSARCVAAS
Ga0187794_15213766	3300019273	Peatland	MSSRTPAPSRASFQLVTGLKSPGVPGMHATPVAVATQSARCVAASNV
Ga0187798_10392531	3300019275	Peatland	MSSRTPAPSRASSQLVTGLKFPGVPGMHATPVAVATQSARCVAASNVSGV
Ga0187797_10068411	3300019284	Peatland	MSSRTPAPSRASSQLVTGLRPPGVLGLHATPVAVASQSARCVAASNVSGV
Ga0242644_10001801	3300022498	Soil	VPSRTPAPSQASFQVVTGLKLPGLLGLQATPLAIASQSARCVAASNVVSV
Ga0242644_10127441	3300022498	Soil	VPSRTPAPSQASFQVVTGLKLPGVLGLHATPVAVASQSARCVAASNVVS
Ga0242641_10000721	3300022499	Soil	VSSRTPAPSQASFQVLTGLKLPGVLGLHATPVAFASQSARCVVASNVVSV
Ga0242641_10043641	3300022499	Soil	VPSRTPAPSQASFQVVTGLKLPDLLGLQATPVAVASQSAR
Ga0242643_1012361	3300022500	Soil	VPSRTPAPSQASFQVVTGLKLPGLLGLQATPVAIAS
Ga0242645_10012461	3300022501	Soil	VPSRTPAPSQASFQVVTGLKLPGLLGLQATPVAVASQSARCVAASNV
Ga0242646_10161331	3300022502	Soil	VPSRTPAPSQALFQVITGLKLPGLLGLQATPVAVASQSARCVASLERRQRR
Ga0242647_10062091	3300022505	Soil	VPSRTPAPSQASFQVVTGLKLPDLLGLQATPVAVASQSARCVAASNVVSV
Ga0242647_10221281	3300022505	Soil	VPSRTPAPSQALFQVITGLKLPGVLGLHATPVAVASQSARCVAASNVV
Ga0222728_10039961	3300022508	Soil	VPSRTPAPSQASFQVVTGLKLPGVLGLHATPVAIASQSARCVAASNVVSVA
Ga0242676_10043941	3300022512	Soil	VPSRTPAPSQALFQVITGLKLPGVLGLHATPVAVASQSARCVAASNVVGVA
Ga0242676_10106771	3300022512	Soil	VPSRTPAPSQASFQVVTGLKLPGVLGLHATPVAIASQSARCVAASNVV
Ga0242667_10364381	3300022513	Soil	VPSRTPAPSQASFQVVTGLKLPGLLGLQATPVAIASQSARCVAASNVVSVA
Ga0242659_10727031	3300022522	Soil	VSSRTPAPSQASFQVLTGLKLPGVLGLHATPVAFASQSARCVVASNVVSVAA
Ga0242664_10003311	3300022527	Soil	VPSRTPAPSQASFQVVTGLKLPDLLGLQATPVAVASQSARCVAASNVVSVA
Ga0242664_10714061	3300022527	Soil	VPSRTPAPSQASFQVVTGLKLPGVLGLHATPVAVASQSARCVAASNVV
Ga0242669_10015811	3300022528	Soil	VSSRTPAPSQASFQVLTGLKLPGVLGLHATPVAFASQSARCVVASNVVSVA
Ga0242658_10935641	3300022530	Soil	VPSRTPAPSQASFQVVTGLKLPGVLGKYATPVAVASQSARCIAASNVVGV
Ga0242655_100013911	3300022532	Soil	VSSRTPAPSQASFQVLTGLKLPGVLGLHATPVAFASQSARCVVASNVV
Ga0242670_10209531	3300022708	Soil	VSSRTSAPSRASFQLITGLKPPGVLGLHATPVAVASQSARCIAASNVV
Ga0242671_10583081	3300022714	Soil	VPSRTPAPSRASFQVVTGLKLPGLLGLQATPVAVASQSARCVASLER
Ga0242678_10018271	3300022715	Soil	VPSRTPAPSQASFQVVTGLKLPGLLGLQATPVAIASQSARCVAASNVVSV
Ga0242678_10018561	3300022715	Soil	VSSRTSAPSQASFQLVTGLKPPGVLGLHATPVAVASQSARCIAASNVVGVA
Ga0242678_10413331	3300022715	Soil	VPSRTPAPSQASFQVVTGLKLPGVLGKYATPVAVASQSARCIAASNVV
Ga0242678_10613751	3300022715	Soil	VSSRTPAPSQASFQVLTGLKLPGVLGLHATPVAFASQSARCVV
Ga0242673_10028541	3300022716	Soil	VPSRTPAPSQASFQVVTGLKLPDLLGLQDTPVAVASQSARCVAASNVVSVA
Ga0242661_10004491	3300022717	Soil	VSSRTPAPSQASFQVLTGLKLPGVLGLHATPVAFASQSARCVVASNVVS
Ga0242661_11051981	3300022717	Soil	VPSRTPAPSQASFQVVTGLKLPGVLGLHATPVAVASQSARCVAASNVVSV
Ga0242666_10599501	3300022721	Soil	VSSRTSAPSRASFQLITGLKPPGVLGLHATPVAVASQSARCVAASNVV
Ga0242666_11645171	3300022721	Soil	VPSRTPAPSQALFQVITGLKLPGLLGLQATPVAVASQSARCVASLERRQ
Ga0242665_101060741	3300022724	Soil	VSSRTSAPSQASFQLVTGLKPPGVLGLHATPVAVASQSARCIAASNVV
Ga0247535_1038802	3300023654	Soil	VPSRTPAPSQALFQVVTGLKLPGLLGLQATPVAVASQSARCVAASNVV
Ga0247533_1002571	3300023675	Soil	VPSRTPAPSQALFQVVTGLKLPGLLGLQATPVAVASQSARCIA
Ga0265775_1049081	3300030762	Soil	VPSRTPAPSQALFQIMTGLKLPGLLGLQATPVAVASQSARCVAASNVV
Ga0265756_1107001	3300030805	Soil	VPSRTPAPSQASFQVVTGLKLPDLLGLQATPVAVASQSARCVAASNVVS
Ga0265731_1003321	3300030806	Soil	VPSRTPAPSQALFQIMTGLKLPGLLGLQATPVAVASQSARCVAASNVVGV
Ga0265731_1006481	3300030806	Soil	MSSRTSAPSRASFQLVTGLKPPGVLGLHATPVAVASQSARCIAASNVVGV
Ga0265731_1015391	3300030806	Soil	VPSRTPAPSRASFQVVTGLKLPGLLGLQATPVAVASQSARCVASLERRQR
Ga0265731_1037611	3300030806	Soil	VPSRTPAPSQALFQVVTGLKLPGLLGLQATPVAVASQSARC
Ga0265735_1004021	3300030811	Soil	VPSRTPAPSQALFQIMTGLKLPGLLGLQATPVAVASQSARCVAASNVVGVA
Ga0265746_10068082	3300030815	Soil	VPSRTPAPSQALFQVVTGLKLPGLLGLQATPVAVASQSARCVAASNVVGV
Ga0265752_1015881	3300030832	Soil	VSSRTSAPSRASFQLVTGLKPPGVLGLHATPVAVASQSARCVAASNVVGVA
Ga0265738_1020262	3300030834	Soil	VPSRTPAPSQALFQVVTGLKLPGLLGLQATPVAVASQSARCIAASSVVGV
Ga0265725_1005481	3300030835	Soil	VPSRTPAPSQALFQVVTGLKVPGLLGLQATPVAVASQSARCIAASSVV
Ga0265766_10069332	3300030863	Soil	VPSRTPAPSQALFQIMTGLKLPGLLGLQATPVAVASQSARCVAASN
Ga0265766_10161131	3300030863	Soil	VPSRTPAPSRASFQVVTGLKLPGLLGLQATPVAVASQSARCVASLERRQRR
Ga0265751_1063052	3300030873	Soil	VPSRTPAPSRASFQVLTGLKLPGVLGLHATPVAFASQSARCVVASNVVS
Ga0265727_1004051	3300030875	Soil	VPSRTPAPSRASFQVVTGLKLPGLLGLLATPVGVASLWAWCVASLERRQRR
Ga0265769_1198041	3300030888	Soil	VSSRTSAPSRASFQLVTGLKPPGVLGLHATPVAVASQSARCVAASNVVG
Ga0265759_1002861	3300030913	Soil	VPSRAPAPSQASFQVVTGLKLPDLLGLQATPVAVASQSARCVAASNVASVA
Ga0265759_1004641	3300030913	Soil	VPSRTPAPSRASFQVLTGLKLPGVLGLHATPVAFASQSARCVVASNVVSV
Ga0265759_1112501	3300030913	Soil	VSSRTSAPSRASFQLVTGLKPPGVLGLHATPVAVASQSARCVAASNVVGV
Ga0265737_1000391	3300030941	Soil	VSSRTSAPSRASFQLVTGLKPPGVLGLHATPVAVASQSARCIAASNVVGVA
Ga0265768_1086971	3300030963	Soil	VPSRTPAPSQASFQVVTGLKLPDLLGLQATPVAVASQSARCVAASNVVG
Ga0265748_1039581	3300030982	Soil	VPSRTPAPSRASFQVVTGLKLPGLLGLQATPVAVASQSARCVASLERRQ
Ga0265771_10086101	3300031010	Soil	VPSRTPAPSQALFQVVTGLKLPGLLGLQATPVAVASQSARCVA
Ga0265755_1006301	3300031041	Soil	VPSRTPAPSQALFQVVTGLKLPGLLGLQATPVAVASQSARCVAASNV
Ga0265749_1040411	3300031042	Soil	VPSRTPAPSQASFQVVTGLKLPDLLGLQATPVAVASQSARCVAASNVASVA
Ga0265779_1042171	3300031043	Soil	VPSRAPAPSQASFQVVTGLKLPDLLGLQATPVAVASQSARCVAASNV
Ga0170824_1275858204	3300031231	Forest Soil	VPSRTPAPSQASFQVVTGLKLPDLLGLQATPVAVASQSARCVAA
Ga0316049_1193481	3300031866	Soil	VSSRTPAPSRASFQIMTGLKLPGVLGLHATPVAVASQSARCVAASNVV
Ga0316033_1047272	3300031872	Soil	VPSRTPAPSQALFQVVTGLKLPGLLGLQATPVAVASQSARCVAASNVVGVA
Ga0348332_104777051	3300032515	Plant Litter	VPSRTPAPSQALFQIVTGLKLPGLLGLQATPVAIASQSARCVAASNVVGV

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F103993

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences