Basic Information | |
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Family ID | F094237 |
Family Type | Metagenome / Metatranscriptome |
Number of Sequences | 106 |
Average Sequence Length | 44 residues |
Representative Sequence | GMVQILGFSGNSTDRPRASTVEVLSVVGPIAGSGTLEAVQAQHV |
Number of Associated Samples | 69 |
Number of Associated Scaffolds | 106 |
Quality Assessment | |
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Transcriptomic Evidence | Yes |
Most common taxonomic group | Unclassified |
% of genes with valid RBS motifs | 39.42 % |
% of genes near scaffold ends (potentially truncated) | 80.19 % |
% of genes from short scaffolds (< 2000 bps) | 90.57 % |
Associated GOLD sequencing projects | 58 |
AlphaFold2 3D model prediction | No |
Hidden Markov Model |
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Most Common Taxonomy | |
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Group | Unclassified (68.868 % of family members) |
NCBI Taxonomy ID | N/A |
Taxonomy | N/A |
Most Common Ecosystem | |
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GOLD Ecosystem | Environmental → Terrestrial → Soil → Unclassified → Unclassified → Peatlands Soil (53.774 % of family members) |
Environment Ontology (ENVO) | Unclassified (69.811 % of family members) |
Earth Microbiome Project Ontology (EMPO) | Free-living → Non-saline → Soil (non-saline) (70.755 % of family members) |
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Full Alignment |
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Alignment of all the sequences in the family. |
IDLabel .2.4.6.8.10.12.14.16.18.20.22.24.26.28.30.32.34.36.38.40.42.44.46.48.50.52.54.56.58.60.62.64.66.68.70. |
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Predicted Topology & Secondary Structure | |||||
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Classification: | Globular | Signal Peptide: | No | Secondary Structure distribution: | α-helix: 2.27% β-sheet: 31.82% Coil/Unstructured: 65.91% |
Feature Viewer | |||||
Position : 0 Zoom : x 1 Enter the variants Position Original Variant |
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Visualization |
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All Organisms Unclassified |
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Visualization |
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Peatland Bog Forest Soil Bog Freshwater Sediment Watersheds Peatlands Soil Soil Tropical Peatland Bog Forest Soil Bog Tropical Forest Soil Forest Soil Peat Soil |
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Protein ID | Sample Taxon ID | Habitat | Sequence |
JGI12535J11911_10053551 | 3300000734 | Tropical Forest Soil | HHFGTAALADPGMVQILGFSGGSSDRSHASTVEILSVVGPIAGSGTLEAVKAQHV* |
Ga0006842J43188_1045941 | 3300002861 | Peatlands Soil | MVQILGFSGNSTDRPHASTVEILSVVGPIAGSGTLEAVKAQHV* |
JGI26339J46600_100733272 | 3300003218 | Bog Forest Soil | MVQILGFSGNSTDRPRASTVEVLSVVGPIADSGTLEAVQAQHV* |
JGI26339J46600_100783092 | 3300003218 | Bog Forest Soil | MVQILGFSGNSTDRPRASTVEVLSVAGPIAGSETLEAVQAQHV* |
Ga0068932_10136224 | 3300004295 | Peatlands Soil | GMVQILGFSGNSTDRPHASTVEILSVVGPIAGSGTLEAVKAQHV* |
Ga0068982_10033781 | 3300004466 | Peatlands Soil | MVQILGFSGNSTDRPHASTVEVLSVVGPMAGSGTLVAVKAQYV* |
Ga0068966_10376654 | 3300004476 | Peatlands Soil | WGMVQILGFSGNSTDRPHASTVEILSVVGPIAGSGTLEAVKAQHV* |
Ga0072324_10037534 | 3300004971 | Peatlands Soil | MVQILGFSGNSTERPHASTVEILSVVGPIAGSGTLEAVKAQHV* |
Ga0075029_1010563221 | 3300006052 | Watersheds | GMVQILGFSGNSTDRPRASTVEVLSVVGPIADSGTLEAVQAQHV* |
Ga0075019_105156401 | 3300006086 | Watersheds | GMVQILGFSGNSTDRPRASTVEVLSVVGPIAGSGTLEAVQAQHV* |
Ga0075014_1004892971 | 3300006174 | Watersheds | FSGNSTDRPRASTVEVLSVVGPIADSGTLEAVQAQHV* |
Ga0116222_10531384 | 3300009521 | Peatlands Soil | MVQILGFSGNSTDRPHASTVEILSVVGPIAGSGTLEAVKA |
Ga0116222_11769492 | 3300009521 | Peatlands Soil | MVQILGFSGNSTDRPHASTVEVLSVVGPMAGSETLVAVKAQYV* |
Ga0116221_12322481 | 3300009523 | Peatlands Soil | MVQILGFSGNSTDRPRASTVEVLSVAGPIAGSETLEAVQ |
Ga0116221_14902521 | 3300009523 | Peatlands Soil | GMVQILGFSGNSTDRPRASTVEVLSVAGPIAGSETLEAVQAQHV* |
Ga0116225_14016232 | 3300009524 | Peatlands Soil | MVQILGFSGNSMDRPHASTVEVLSVVGPMAGSGTLVAVKAQYV* |
Ga0116220_102199661 | 3300009525 | Peatlands Soil | MVQILGFSGNSTDRPHASTVEVLSVVGPMAGSGTLV |
Ga0116215_12358902 | 3300009672 | Peatlands Soil | MVQILGFSGNSMDRPHASTVEVLSVVGLMAGSGTLVAVKAQYV* |
Ga0116215_12649961 | 3300009672 | Peatlands Soil | MGMVQILGYSGNSTDRPHASTVGIRSVVGPIAGSGTLEAVP |
Ga0116224_101461522 | 3300009683 | Peatlands Soil | ETGMVQIVGFSGNSTDRPRASTVEVLSVVGPIAGSGTLEAVKARHV* |
Ga0116224_105706531 | 3300009683 | Peatlands Soil | QILGFSGNSTDRPRASTVEVLSVAGPIAGSETLEAVQAQHV* |
Ga0116224_105802311 | 3300009683 | Peatlands Soil | MVQILGFSGNSTDRLRASTVEVLSVVEPIAASGTLE |
Ga0116216_103467842 | 3300009698 | Peatlands Soil | MIKPSPDGDSGMVQILGFSGNSTDRPRASTVEALSVAAPIAGSGTLEAVPAQHV* |
Ga0116216_103914731 | 3300009698 | Peatlands Soil | MVQILGFSGNSTDRPRASTVEVLSVAGPIAGSETLEAVQAQH |
Ga0116216_105659661 | 3300009698 | Peatlands Soil | MGMVQILGYSGNSTDRPHASTVGIRSVVGPIAGSG |
Ga0116216_108762831 | 3300009698 | Peatlands Soil | GMVQILGFSGNSTDRPRASTVEVLSVAGPIAGSETLEAVPAQHV* |
Ga0116217_101805061 | 3300009700 | Peatlands Soil | MGMVQILGFSGNSTDRPRASTVEVLSVVGPIAGSGTLEAV |
Ga0116219_107881622 | 3300009824 | Peatlands Soil | AEAGYPVITGRFSGMVQILGFSGNSTDHPRASTVEVLSVVGPIADSETLEAVQAQHV* |
Ga0116223_102251972 | 3300009839 | Peatlands Soil | GMVQIVGFSGNSTDRPRASTVEVLSVVGPIAGSGTLEAVKARHV* |
Ga0116223_107033441 | 3300009839 | Peatlands Soil | SGMVQILGFSGNSTDRPRASTVEVLSVAGPIAGSETLEAVQAQHV* |
Ga0074046_100013849 | 3300010339 | Bog Forest Soil | MGMVQILGFSGNSTDRPRASPVEVLSVVGPIAGSGTLEAVQAQQV* |
Ga0074046_100233091 | 3300010339 | Bog Forest Soil | MTISGMVQILGYSGNSTDRPHASTVGIRSVVGPIAGSGTLEAVP |
Ga0074046_104809951 | 3300010339 | Bog Forest Soil | MASAFSGMVQILGFSGNSTDRSHASTVEILSVVGPIAGSGTLEAVKAQNV* |
Ga0074046_107011012 | 3300010339 | Bog Forest Soil | MVQILGYSGNSTDRPHASTVGIRSVVGPIAGSGTLEAVPA |
Ga0074045_108708451 | 3300010341 | Bog Forest Soil | MRYGMVQILGFSGNSTDRPRASTVEVLSVVGPIADSGTLEAVQAQ |
Ga0074044_109104552 | 3300010343 | Bog Forest Soil | MVQILGFSGNSTDRPRASTVEVLSVVGPIADSGTLEAV |
Ga0136449_1010222451 | 3300010379 | Peatlands Soil | GMVQILGFSGNSTDRPRASTVEVLSVAGPRAGSETLEAVQAQHV* |
Ga0136449_1026524101 | 3300010379 | Peatlands Soil | VGFSGNSTDRPRASTVEVLSVVGPIAGSGTLEAVKARHV* |
Ga0136449_1026613343 | 3300010379 | Peatlands Soil | MVQILGFSGNSTDRPRASTVEVLSVAGPRAGSETLEAVQA |
Ga0136449_1040852241 | 3300010379 | Peatlands Soil | MVQILGFSGNSTDRPRASTVEVLSVAGPRAGSETLEAV |
Ga0138557_1034971 | 3300011019 | Peatlands Soil | GNCCFVNNVEGMVQILGFSGNSTDRPHASTVEVLSVVGPMAGSGTLVAVKAQYV* |
Ga0138571_1208052 | 3300011050 | Peatlands Soil | VGSVYGMVQILGFSGNSTDRPHASTVEVLSVVGPMAGSGTLVAVKAQYV* |
Ga0138582_11087631 | 3300011062 | Peatlands Soil | MAPSIDSTNFALGMVQILGFSGNSTDRPHASTVEILSVVGPIAGSGTLEAVKAQHV* |
Ga0138594_10414871 | 3300011067 | Peatlands Soil | NVGSVYGMVQILGFSGNSTDRPHASTVEILSVVGPIAGSGTLEAVKAQHV* |
Ga0138569_11905921 | 3300011079 | Peatlands Soil | NRFVELPEISGMVQILGFSGNSTDRPRASTVEVLSVVGPIADSGTLEAVPAQHV* |
Ga0181521_106284671 | 3300014158 | Bog | RVPPAWETTSIVGGGSGMVQNLGFSGNSTDRPRASTVEVLFVAGPIAGSGTLEAVQAQHV |
Ga0181530_101689252 | 3300014159 | Bog | MVQILGFSGNSTDHPHASTVEVLSVVGPMAGSGTLVAVKAQYVSQ* |
Ga0181538_105163121 | 3300014162 | Bog | MGMVQILGFSGNSTDRPHASTVEVLSVVGPMAGSG |
Ga0181538_105444151 | 3300014162 | Bog | GMVQILGFSGNSTDRPRASTVEVLSVVGPIADSGTLEAVPAQHV* |
Ga0181532_103556442 | 3300014164 | Bog | LDLRLGGEVNLGMVQILGFSGNSTDRPHASTVEVLSVVGPMAGSGTLVAV |
Ga0181532_104378761 | 3300014164 | Bog | MVQILGFSGNSTDRPHAATVEVLSVVGPMAGSGTLVAVKAQYV* |
Ga0181523_100495812 | 3300014165 | Bog | GMVQILGFSGNSTDRPRASTVEVLSVVGPIADSGTLEAVQARQV* |
Ga0181526_109477722 | 3300014200 | Bog | MVQILGFSGNSTDCPRASTVGILSVVGAIAGSGTLEAVQAQ |
Ga0181526_110250061 | 3300014200 | Bog | FSGNSTDRPRASTVEALSVAAPIAGSGTLEAVPAQHV* |
Ga0181536_102806863 | 3300014638 | Bog | LGFSGNSTDRPRASTVEVLSVVGPIADSGTLEAVQAQHV* |
Ga0182030_106986082 | 3300014838 | Bog | MVVPCDRLGMVQILGFSGNSTDRPHASTVEVLSVVGPMAGSGTLVAVKAQYV* |
Ga0181511_14502912 | 3300016702 | Peatland | MLRIALSGNSTDRPHAATVEVLSVVGPMAGSGTLVAVK |
Ga0181505_101913691 | 3300016750 | Peatland | VGMVQILGFSGNSTDRPHASTVEVLSVVGPMAGSGTLVAVK |
Ga0181505_102506861 | 3300016750 | Peatland | MVQILGYSGNSTDRPHASTVGIRSVVGPIAGSGTLEAVPAQPVEPVRVR |
Ga0187802_104531801 | 3300017822 | Freshwater Sediment | AVITGRFSGMVQILGFSGNSTDRPRASTVEVLSVVGPIADSGTLEAVQAQHV |
Ga0187820_11498822 | 3300017924 | Freshwater Sediment | MVQILGFSGNCMDRPRASTMEILSIVGPIAGSGTLDAVKGLHAEPVG |
Ga0187814_103918152 | 3300017932 | Freshwater Sediment | MASVILGMVQILGFSGNSTDRPHASTVEVLSVVGPMAGSGTLVAVKAQYV |
Ga0187817_101825051 | 3300017955 | Freshwater Sediment | MVQILGFSGNSTDRPRASTVEVLSVVGPIAGSGTLEAVQAQHVQPVPVG |
Ga0187778_101687221 | 3300017961 | Tropical Peatland | GIDAVRSNKIGMVQILGFSGSSTDRPRASTVAVRSVVGPIAGSGTLEAVQAQHV |
Ga0187878_13488551 | 3300018005 | Peatland | GMVQILGFSGNSTDRPHASTVEVLSVVGPMAGSGTLVAVKAQYV |
Ga0187888_12672492 | 3300018008 | Peatland | MVQILGFSGNSTDRPHASTVEVLSVVGPMAGSGTLVAVKAQYV |
Ga0187867_106378391 | 3300018033 | Peatland | MVQILGFSGNSTDRPRASTVEVLSVVGPIPGSGTLEAVQARHVEPVRVGLACQQ |
Ga0187890_102788102 | 3300018044 | Peatland | MLRIALSGNSTDRPHASTVEVLSVVGPMAGSGTLVAVKA |
Ga0187769_113433742 | 3300018086 | Tropical Peatland | MVQILGFSGNSTDRPHASTVEVLSVVGPMAGSETLVAVKAQYV |
Ga0207839_10162961 | 3300027010 | Tropical Forest Soil | QILGFSGNSTDRPHASTVEVLSVVGPMAGSGTLVAVKAQYV |
Ga0207800_10400991 | 3300027043 | Tropical Forest Soil | LGFSGNSTDRPRASTVEVLSVVGPIADSGTLEAVQAQHV |
Ga0208604_10174611 | 3300027090 | Forest Soil | ASGYRDSDSSDTGMVQILGFSGNSTDRPHASTVEVLSVVGPMAGSGTLVAVKAQYV |
Ga0208199_10330942 | 3300027497 | Peatlands Soil | MVQILGFSGNSTDRPHASTVEVLSVVGPMAGSGTLVAVK |
Ga0208324_11021572 | 3300027604 | Peatlands Soil | MVQILGDSGNSTDRPHASTVGIRSVVGPIAGSGTLEAVPAQPVEPVRV |
Ga0208044_100041926 | 3300027625 | Peatlands Soil | MVQILGFSGNSTDRPHASTVEILSVVGPIAGSGTLEAVKAQ |
Ga0208044_10060421 | 3300027625 | Peatlands Soil | GMVQILGFSGNSTDRPHASTVEILSVVGPIAGSGTLEAVKAQHV |
Ga0208044_10770741 | 3300027625 | Peatlands Soil | GGETGMVQIVGFSGNSTDRPRASTVEVLSVVGPIAGSGTLEAVKARHV |
Ga0208044_10839032 | 3300027625 | Peatlands Soil | MVQILGFSGNSTDRPRASTVEVLSVAGPIAGSETLEAVQA |
Ga0208565_10278764 | 3300027662 | Peatlands Soil | MVQILGFSGNSTDRPHASTVEVLSVVGPMAGSGTL |
Ga0208565_10784422 | 3300027662 | Peatlands Soil | MVQILGFSGNSTDRPRASTVEVLSVAGPIAGSETLEAV |
Ga0208565_10916232 | 3300027662 | Peatlands Soil | MVQILGFSGNSMDRPHASTVEVLSVVGLMAGSGTLVAVKAQYV |
Ga0208696_10447294 | 3300027696 | Peatlands Soil | MVQILGFSGNSTDRPHASTVEVLSVVGPMAGSGTLVAVKA |
Ga0208696_10847272 | 3300027696 | Peatlands Soil | ETGMVQIVGFSGNSTDRPRASTVEVLSVVGPIAGSGTLEAVKARHV |
Ga0208696_11962711 | 3300027696 | Peatlands Soil | MVQILGFSGNSTDRPHASTVEVLSVVGPMAGSGTLVAVKAQ |
Ga0209656_102759432 | 3300027812 | Bog Forest Soil | LYTVKNQGMVQILGFSGNSTDRPRASTVEVLSVAGPIAGSETLEAVQAQHV |
Ga0209039_102168361 | 3300027825 | Bog Forest Soil | MVQILGFSGNSTGRPHASTVEVLSVVGPMAGSETLVAVKAQYV |
Ga0209039_103152912 | 3300027825 | Bog Forest Soil | MVQILGFSGNSPDRSHASTVEILSVVGPIAGSGTLE |
Ga0209517_106466711 | 3300027854 | Peatlands Soil | QRRGMVQILGFSGNSTDRPRASTVEVLSVAGPIAGSETLEAVQAQHV |
Ga0310037_104118061 | 3300030494 | Peatlands Soil | PNHVAMIKPSPDGDSGMVQILGFSGNSTDRPRASTVEALSVAAPIAGSGTLEAVPAQHV |
Ga0316363_102031932 | 3300030659 | Peatlands Soil | MPQKGMVQILGFSGNSTDRPHASTVEVLSVVGPMAGSETLVAVKAQYV |
Ga0310039_100209051 | 3300030706 | Peatlands Soil | MGMVQILGFSGNSTDRPRASTVEVLSVVGPIAGSGTLEA |
Ga0310039_102284721 | 3300030706 | Peatlands Soil | MIKPSPDGDSGMVQILGFSGNSTDRPRASTVEALSVAAPIAGSGTLEAVPAQHV |
Ga0310038_101852291 | 3300030707 | Peatlands Soil | MVQILGFSGNSTDRPRASTVEVLSVAGPIAGSETLEAVQAQ |
Ga0310038_104612991 | 3300030707 | Peatlands Soil | GMVQILGFSGNSTDRPRASTVEVLSVAGPIAGSETLEAVQAQHV |
Ga0310038_104665531 | 3300030707 | Peatlands Soil | MGMVQILGYSGNSTDRPHASTVGIRSVVGPIAGSGTLEAV |
Ga0311301_106182231 | 3300032160 | Peatlands Soil | MVQILGFSGNSTDRPHAATVEVLSVVGPMAGSGTLVAVKAQ |
Ga0311301_114558041 | 3300032160 | Peatlands Soil | MVQILGYSGKSTDRPHASTVGIRSVVGPIAGSGTLEAVPAQPVEPVRVRLAS |
Ga0311301_115415483 | 3300032160 | Peatlands Soil | MVQILGFSGNSTDRPHASTVEVLSVVGPMAGSGTLVA |
Ga0311301_126333121 | 3300032160 | Peatlands Soil | MVQILGFSGNSTDRPRASTVEVLSVVGPIADSGTLEAVQAQ |
Ga0335081_122609701 | 3300032892 | Soil | NDKKSGMVQILGFSGNSTDRPHASTVEVLSVVGPMAGSGTLVAVKAQYV |
Ga0326728_102734663 | 3300033402 | Peat Soil | MVQILGFSGNSTDRPNVSTVEVLSVVGPMAGSGTLVAVKAQYV |
Ga0326728_104042511 | 3300033402 | Peat Soil | MVQILGFSGNSTDRPHASTVEVLSVVGPMAGSGTLVAV |
Ga0326728_105865172 | 3300033402 | Peat Soil | MVQILGFSGNSTDRPRASTVEVLSVAGPIAGSGTLEAV |
Ga0326728_109726402 | 3300033402 | Peat Soil | MGMVQILGFSGNSTDRPRASTVEVLSVVGPIAGSGT |
Ga0326727_110682112 | 3300033405 | Peat Soil | PSLVLGRNFGMVQILGFAGNSTDRPRASTVEVLSVAGPIAGSETLEAVQAQHV |
Ga0371489_0460535_4_171 | 3300033755 | Peat Soil | MTKVKPVWLCFGMVQILGFSGNSTDRPRASTVEVLSVAGPIAGSETLEAVQAQHV |
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