NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Metagenome / Metatranscriptome Family F094237

Metagenome / Metatranscriptome Family F094237

Go to section:
Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences
Select file to download:
   Download


Overview

Basic Information
Family ID F094237
Family Type Metagenome / Metatranscriptome
Number of Sequences 106
Average Sequence Length 44 residues
Representative Sequence GMVQILGFSGNSTDRPRASTVEVLSVVGPIAGSGTLEAVQAQHV
Number of Associated Samples 69
Number of Associated Scaffolds 106

Quality Assessment
Transcriptomic Evidence Yes
Most common taxonomic group Unclassified
% of genes with valid RBS motifs 39.42 %
% of genes near scaffold ends (potentially truncated) 80.19 %
% of genes from short scaffolds (< 2000 bps) 90.57 %
Associated GOLD sequencing projects 58
AlphaFold2 3D model prediction No

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.
Hidden Markov Model
Powered by Skylign

Most Common Taxonomy
Group Unclassified (68.868 % of family members)
NCBI Taxonomy ID N/A
Taxonomy N/A

Most Common Ecosystem
GOLD Ecosystem Environmental → Terrestrial → Soil → Unclassified → Unclassified → Peatlands Soil
(53.774 % of family members)
Environment Ontology (ENVO) Unclassified
(69.811 % of family members)
Earth Microbiome Project Ontology (EMPO) Free-living → Non-saline → Soil (non-saline)
(70.755 % of family members)



 ⦗Top⦘

Multiple Sequence Alignments

Select alignment to view:      
Full Alignment
Alignment of all the sequences in the family.
Sorting
Filter
Selection
Vis.elements
Color scheme
Extras
Export
Help

IDLabel
.2.4.6.8.10.12.14.16.18.20.22.24.26.28.30.32.34.36.38.40.42.44.46.48.50.52.54.56.58.60.62.64.66.68.70.
1JGI12535J11911_10053551
2Ga0006842J43188_1045941
3JGI26339J46600_100733272
4JGI26339J46600_100783092
5Ga0068932_10136224
6Ga0068982_10033781
7Ga0068966_10376654
8Ga0072324_10037534
9Ga0075029_1010563221
10Ga0075019_105156401
11Ga0075014_1004892971
12Ga0116222_10531384
13Ga0116222_11769492
14Ga0116221_12322481
15Ga0116221_14902521
16Ga0116225_14016232
17Ga0116220_102199661
18Ga0116215_12358902
19Ga0116215_12649961
20Ga0116224_101461522
21Ga0116224_105706531
22Ga0116224_105802311
23Ga0116216_103467842
24Ga0116216_103914731
25Ga0116216_105659661
26Ga0116216_108762831
27Ga0116217_101805061
28Ga0116219_107881622
29Ga0116223_102251972
30Ga0116223_107033441
31Ga0074046_100013849
32Ga0074046_100233091
33Ga0074046_104809951
34Ga0074046_107011012
35Ga0074045_108708451
36Ga0074044_109104552
37Ga0136449_1010222451
38Ga0136449_1026524101
39Ga0136449_1026613343
40Ga0136449_1040852241
41Ga0138557_1034971
42Ga0138571_1208052
43Ga0138582_11087631
44Ga0138594_10414871
45Ga0138569_11905921
46Ga0181521_106284671
47Ga0181530_101689252
48Ga0181538_105163121
49Ga0181538_105444151
50Ga0181532_103556442
51Ga0181532_104378761
52Ga0181523_100495812
53Ga0181526_109477722
54Ga0181526_110250061
55Ga0181536_102806863
56Ga0182030_106986082
57Ga0181511_14502912
58Ga0181505_101913691
59Ga0181505_102506861
60Ga0187802_104531801
61Ga0187820_11498822
62Ga0187814_103918152
63Ga0187817_101825051
64Ga0187778_101687221
65Ga0187878_13488551
66Ga0187888_12672492
67Ga0187867_106378391
68Ga0187890_102788102
69Ga0187769_113433742
70Ga0207839_10162961
71Ga0207800_10400991
72Ga0208604_10174611
73Ga0208199_10330942
74Ga0208324_11021572
75Ga0208044_100041926
76Ga0208044_10060421
77Ga0208044_10770741
78Ga0208044_10839032
79Ga0208565_10278764
80Ga0208565_10784422
81Ga0208565_10916232
82Ga0208696_10447294
83Ga0208696_10847272
84Ga0208696_11962711
85Ga0209656_102759432
86Ga0209039_102168361
87Ga0209039_103152912
88Ga0209517_106466711
89Ga0310037_104118061
90Ga0316363_102031932
91Ga0310039_100209051
92Ga0310039_102284721
93Ga0310038_101852291
94Ga0310038_104612991
95Ga0310038_104665531
96Ga0311301_106182231
97Ga0311301_114558041
98Ga0311301_115415483
99Ga0311301_126333121
100Ga0335081_122609701
101Ga0326728_102734663
102Ga0326728_104042511
103Ga0326728_105865172
104Ga0326728_109726402
105Ga0326727_110682112
106Ga0371489_0460535_4_171
Powered by MSAViewer


 ⦗Top⦘

Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification: Globular Signal Peptide: No Secondary Structure distribution: α-helix: 2.27%    β-sheet: 31.82%    Coil/Unstructured: 65.91%
Feature Viewer
Position :
0
Zoom :
x 1
+ Add Multiple Variants

Enter the variants

Position

Original

Variant

Get Predictions
Get Predictions

Enter the variants

Position

Original

Variant

510152025303540GMVQILGFSGNSTDRPRASTVEVLSVVGPIAGSGTLEAVQAQHVSequenceα-helicesβ-strandsCoilSS Conf. score
Powered by Feature Viewer


 ⦗Top⦘

Gene Neighborhood

Neighboring Pfam domains


Neighboring Clusters of Orthologous Genes (COGs)



 ⦗Top⦘

Phylogeny

NCBI Taxonomy

Select NCBI taxonomy Level:

Visualization
All Organisms
Unclassified
31.1%68.9%
Download SVG
Download PNG
Download CSV
Powered by ApexCharts

Associated Scaffolds





 ⦗Top⦘

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Visualization
Peatland
Bog Forest Soil
Bog
Freshwater Sediment
Watersheds
Peatlands Soil
Soil
Tropical Peatland
Bog Forest Soil
Bog
Tropical Forest Soil
Forest Soil
Peat Soil
6.6%4.7%9.4%3.8%2.8%53.8%5.7%2.8%5.7%
Download SVG
Download PNG
Download CSV
Powered by ApexCharts



Associated Samples


Geographical Distribution
Zoom:     Powered by OpenStreetMap



 ⦗Top⦘

Family Sequences

Protein ID Sample Taxon ID Habitat Sequence
JGI12535J11911_100535513300000734Tropical Forest SoilHHFGTAALADPGMVQILGFSGGSSDRSHASTVEILSVVGPIAGSGTLEAVKAQHV*
Ga0006842J43188_10459413300002861Peatlands SoilMVQILGFSGNSTDRPHASTVEILSVVGPIAGSGTLEAVKAQHV*
JGI26339J46600_1007332723300003218Bog Forest SoilMVQILGFSGNSTDRPRASTVEVLSVVGPIADSGTLEAVQAQHV*
JGI26339J46600_1007830923300003218Bog Forest SoilMVQILGFSGNSTDRPRASTVEVLSVAGPIAGSETLEAVQAQHV*
Ga0068932_101362243300004295Peatlands SoilGMVQILGFSGNSTDRPHASTVEILSVVGPIAGSGTLEAVKAQHV*
Ga0068982_100337813300004466Peatlands SoilMVQILGFSGNSTDRPHASTVEVLSVVGPMAGSGTLVAVKAQYV*
Ga0068966_103766543300004476Peatlands SoilWGMVQILGFSGNSTDRPHASTVEILSVVGPIAGSGTLEAVKAQHV*
Ga0072324_100375343300004971Peatlands SoilMVQILGFSGNSTERPHASTVEILSVVGPIAGSGTLEAVKAQHV*
Ga0075029_10105632213300006052WatershedsGMVQILGFSGNSTDRPRASTVEVLSVVGPIADSGTLEAVQAQHV*
Ga0075019_1051564013300006086WatershedsGMVQILGFSGNSTDRPRASTVEVLSVVGPIAGSGTLEAVQAQHV*
Ga0075014_10048929713300006174WatershedsFSGNSTDRPRASTVEVLSVVGPIADSGTLEAVQAQHV*
Ga0116222_105313843300009521Peatlands SoilMVQILGFSGNSTDRPHASTVEILSVVGPIAGSGTLEAVKA
Ga0116222_117694923300009521Peatlands SoilMVQILGFSGNSTDRPHASTVEVLSVVGPMAGSETLVAVKAQYV*
Ga0116221_123224813300009523Peatlands SoilMVQILGFSGNSTDRPRASTVEVLSVAGPIAGSETLEAVQ
Ga0116221_149025213300009523Peatlands SoilGMVQILGFSGNSTDRPRASTVEVLSVAGPIAGSETLEAVQAQHV*
Ga0116225_140162323300009524Peatlands SoilMVQILGFSGNSMDRPHASTVEVLSVVGPMAGSGTLVAVKAQYV*
Ga0116220_1021996613300009525Peatlands SoilMVQILGFSGNSTDRPHASTVEVLSVVGPMAGSGTLV
Ga0116215_123589023300009672Peatlands SoilMVQILGFSGNSMDRPHASTVEVLSVVGLMAGSGTLVAVKAQYV*
Ga0116215_126499613300009672Peatlands SoilMGMVQILGYSGNSTDRPHASTVGIRSVVGPIAGSGTLEAVP
Ga0116224_1014615223300009683Peatlands SoilETGMVQIVGFSGNSTDRPRASTVEVLSVVGPIAGSGTLEAVKARHV*
Ga0116224_1057065313300009683Peatlands SoilQILGFSGNSTDRPRASTVEVLSVAGPIAGSETLEAVQAQHV*
Ga0116224_1058023113300009683Peatlands SoilMVQILGFSGNSTDRLRASTVEVLSVVEPIAASGTLE
Ga0116216_1034678423300009698Peatlands SoilMIKPSPDGDSGMVQILGFSGNSTDRPRASTVEALSVAAPIAGSGTLEAVPAQHV*
Ga0116216_1039147313300009698Peatlands SoilMVQILGFSGNSTDRPRASTVEVLSVAGPIAGSETLEAVQAQH
Ga0116216_1056596613300009698Peatlands SoilMGMVQILGYSGNSTDRPHASTVGIRSVVGPIAGSG
Ga0116216_1087628313300009698Peatlands SoilGMVQILGFSGNSTDRPRASTVEVLSVAGPIAGSETLEAVPAQHV*
Ga0116217_1018050613300009700Peatlands SoilMGMVQILGFSGNSTDRPRASTVEVLSVVGPIAGSGTLEAV
Ga0116219_1078816223300009824Peatlands SoilAEAGYPVITGRFSGMVQILGFSGNSTDHPRASTVEVLSVVGPIADSETLEAVQAQHV*
Ga0116223_1022519723300009839Peatlands SoilGMVQIVGFSGNSTDRPRASTVEVLSVVGPIAGSGTLEAVKARHV*
Ga0116223_1070334413300009839Peatlands SoilSGMVQILGFSGNSTDRPRASTVEVLSVAGPIAGSETLEAVQAQHV*
Ga0074046_1000138493300010339Bog Forest SoilMGMVQILGFSGNSTDRPRASPVEVLSVVGPIAGSGTLEAVQAQQV*
Ga0074046_1002330913300010339Bog Forest SoilMTISGMVQILGYSGNSTDRPHASTVGIRSVVGPIAGSGTLEAVP
Ga0074046_1048099513300010339Bog Forest SoilMASAFSGMVQILGFSGNSTDRSHASTVEILSVVGPIAGSGTLEAVKAQNV*
Ga0074046_1070110123300010339Bog Forest SoilMVQILGYSGNSTDRPHASTVGIRSVVGPIAGSGTLEAVPA
Ga0074045_1087084513300010341Bog Forest SoilMRYGMVQILGFSGNSTDRPRASTVEVLSVVGPIADSGTLEAVQAQ
Ga0074044_1091045523300010343Bog Forest SoilMVQILGFSGNSTDRPRASTVEVLSVVGPIADSGTLEAV
Ga0136449_10102224513300010379Peatlands SoilGMVQILGFSGNSTDRPRASTVEVLSVAGPRAGSETLEAVQAQHV*
Ga0136449_10265241013300010379Peatlands SoilVGFSGNSTDRPRASTVEVLSVVGPIAGSGTLEAVKARHV*
Ga0136449_10266133433300010379Peatlands SoilMVQILGFSGNSTDRPRASTVEVLSVAGPRAGSETLEAVQA
Ga0136449_10408522413300010379Peatlands SoilMVQILGFSGNSTDRPRASTVEVLSVAGPRAGSETLEAV
Ga0138557_10349713300011019Peatlands SoilGNCCFVNNVEGMVQILGFSGNSTDRPHASTVEVLSVVGPMAGSGTLVAVKAQYV*
Ga0138571_12080523300011050Peatlands SoilVGSVYGMVQILGFSGNSTDRPHASTVEVLSVVGPMAGSGTLVAVKAQYV*
Ga0138582_110876313300011062Peatlands SoilMAPSIDSTNFALGMVQILGFSGNSTDRPHASTVEILSVVGPIAGSGTLEAVKAQHV*
Ga0138594_104148713300011067Peatlands SoilNVGSVYGMVQILGFSGNSTDRPHASTVEILSVVGPIAGSGTLEAVKAQHV*
Ga0138569_119059213300011079Peatlands SoilNRFVELPEISGMVQILGFSGNSTDRPRASTVEVLSVVGPIADSGTLEAVPAQHV*
Ga0181521_1062846713300014158BogRVPPAWETTSIVGGGSGMVQNLGFSGNSTDRPRASTVEVLFVAGPIAGSGTLEAVQAQHV
Ga0181530_1016892523300014159BogMVQILGFSGNSTDHPHASTVEVLSVVGPMAGSGTLVAVKAQYVSQ*
Ga0181538_1051631213300014162BogMGMVQILGFSGNSTDRPHASTVEVLSVVGPMAGSG
Ga0181538_1054441513300014162BogGMVQILGFSGNSTDRPRASTVEVLSVVGPIADSGTLEAVPAQHV*
Ga0181532_1035564423300014164BogLDLRLGGEVNLGMVQILGFSGNSTDRPHASTVEVLSVVGPMAGSGTLVAV
Ga0181532_1043787613300014164BogMVQILGFSGNSTDRPHAATVEVLSVVGPMAGSGTLVAVKAQYV*
Ga0181523_1004958123300014165BogGMVQILGFSGNSTDRPRASTVEVLSVVGPIADSGTLEAVQARQV*
Ga0181526_1094777223300014200BogMVQILGFSGNSTDCPRASTVGILSVVGAIAGSGTLEAVQAQ
Ga0181526_1102500613300014200BogFSGNSTDRPRASTVEALSVAAPIAGSGTLEAVPAQHV*
Ga0181536_1028068633300014638BogLGFSGNSTDRPRASTVEVLSVVGPIADSGTLEAVQAQHV*
Ga0182030_1069860823300014838BogMVVPCDRLGMVQILGFSGNSTDRPHASTVEVLSVVGPMAGSGTLVAVKAQYV*
Ga0181511_145029123300016702PeatlandMLRIALSGNSTDRPHAATVEVLSVVGPMAGSGTLVAVK
Ga0181505_1019136913300016750PeatlandVGMVQILGFSGNSTDRPHASTVEVLSVVGPMAGSGTLVAVK
Ga0181505_1025068613300016750PeatlandMVQILGYSGNSTDRPHASTVGIRSVVGPIAGSGTLEAVPAQPVEPVRVR
Ga0187802_1045318013300017822Freshwater SedimentAVITGRFSGMVQILGFSGNSTDRPRASTVEVLSVVGPIADSGTLEAVQAQHV
Ga0187820_114988223300017924Freshwater SedimentMVQILGFSGNCMDRPRASTMEILSIVGPIAGSGTLDAVKGLHAEPVG
Ga0187814_1039181523300017932Freshwater SedimentMASVILGMVQILGFSGNSTDRPHASTVEVLSVVGPMAGSGTLVAVKAQYV
Ga0187817_1018250513300017955Freshwater SedimentMVQILGFSGNSTDRPRASTVEVLSVVGPIAGSGTLEAVQAQHVQPVPVG
Ga0187778_1016872213300017961Tropical PeatlandGIDAVRSNKIGMVQILGFSGSSTDRPRASTVAVRSVVGPIAGSGTLEAVQAQHV
Ga0187878_134885513300018005PeatlandGMVQILGFSGNSTDRPHASTVEVLSVVGPMAGSGTLVAVKAQYV
Ga0187888_126724923300018008PeatlandMVQILGFSGNSTDRPHASTVEVLSVVGPMAGSGTLVAVKAQYV
Ga0187867_1063783913300018033PeatlandMVQILGFSGNSTDRPRASTVEVLSVVGPIPGSGTLEAVQARHVEPVRVGLACQQ
Ga0187890_1027881023300018044PeatlandMLRIALSGNSTDRPHASTVEVLSVVGPMAGSGTLVAVKA
Ga0187769_1134337423300018086Tropical PeatlandMVQILGFSGNSTDRPHASTVEVLSVVGPMAGSETLVAVKAQYV
Ga0207839_101629613300027010Tropical Forest SoilQILGFSGNSTDRPHASTVEVLSVVGPMAGSGTLVAVKAQYV
Ga0207800_104009913300027043Tropical Forest SoilLGFSGNSTDRPRASTVEVLSVVGPIADSGTLEAVQAQHV
Ga0208604_101746113300027090Forest SoilASGYRDSDSSDTGMVQILGFSGNSTDRPHASTVEVLSVVGPMAGSGTLVAVKAQYV
Ga0208199_103309423300027497Peatlands SoilMVQILGFSGNSTDRPHASTVEVLSVVGPMAGSGTLVAVK
Ga0208324_110215723300027604Peatlands SoilMVQILGDSGNSTDRPHASTVGIRSVVGPIAGSGTLEAVPAQPVEPVRV
Ga0208044_1000419263300027625Peatlands SoilMVQILGFSGNSTDRPHASTVEILSVVGPIAGSGTLEAVKAQ
Ga0208044_100604213300027625Peatlands SoilGMVQILGFSGNSTDRPHASTVEILSVVGPIAGSGTLEAVKAQHV
Ga0208044_107707413300027625Peatlands SoilGGETGMVQIVGFSGNSTDRPRASTVEVLSVVGPIAGSGTLEAVKARHV
Ga0208044_108390323300027625Peatlands SoilMVQILGFSGNSTDRPRASTVEVLSVAGPIAGSETLEAVQA
Ga0208565_102787643300027662Peatlands SoilMVQILGFSGNSTDRPHASTVEVLSVVGPMAGSGTL
Ga0208565_107844223300027662Peatlands SoilMVQILGFSGNSTDRPRASTVEVLSVAGPIAGSETLEAV
Ga0208565_109162323300027662Peatlands SoilMVQILGFSGNSMDRPHASTVEVLSVVGLMAGSGTLVAVKAQYV
Ga0208696_104472943300027696Peatlands SoilMVQILGFSGNSTDRPHASTVEVLSVVGPMAGSGTLVAVKA
Ga0208696_108472723300027696Peatlands SoilETGMVQIVGFSGNSTDRPRASTVEVLSVVGPIAGSGTLEAVKARHV
Ga0208696_119627113300027696Peatlands SoilMVQILGFSGNSTDRPHASTVEVLSVVGPMAGSGTLVAVKAQ
Ga0209656_1027594323300027812Bog Forest SoilLYTVKNQGMVQILGFSGNSTDRPRASTVEVLSVAGPIAGSETLEAVQAQHV
Ga0209039_1021683613300027825Bog Forest SoilMVQILGFSGNSTGRPHASTVEVLSVVGPMAGSETLVAVKAQYV
Ga0209039_1031529123300027825Bog Forest SoilMVQILGFSGNSPDRSHASTVEILSVVGPIAGSGTLE
Ga0209517_1064667113300027854Peatlands SoilQRRGMVQILGFSGNSTDRPRASTVEVLSVAGPIAGSETLEAVQAQHV
Ga0310037_1041180613300030494Peatlands SoilPNHVAMIKPSPDGDSGMVQILGFSGNSTDRPRASTVEALSVAAPIAGSGTLEAVPAQHV
Ga0316363_1020319323300030659Peatlands SoilMPQKGMVQILGFSGNSTDRPHASTVEVLSVVGPMAGSETLVAVKAQYV
Ga0310039_1002090513300030706Peatlands SoilMGMVQILGFSGNSTDRPRASTVEVLSVVGPIAGSGTLEA
Ga0310039_1022847213300030706Peatlands SoilMIKPSPDGDSGMVQILGFSGNSTDRPRASTVEALSVAAPIAGSGTLEAVPAQHV
Ga0310038_1018522913300030707Peatlands SoilMVQILGFSGNSTDRPRASTVEVLSVAGPIAGSETLEAVQAQ
Ga0310038_1046129913300030707Peatlands SoilGMVQILGFSGNSTDRPRASTVEVLSVAGPIAGSETLEAVQAQHV
Ga0310038_1046655313300030707Peatlands SoilMGMVQILGYSGNSTDRPHASTVGIRSVVGPIAGSGTLEAV
Ga0311301_1061822313300032160Peatlands SoilMVQILGFSGNSTDRPHAATVEVLSVVGPMAGSGTLVAVKAQ
Ga0311301_1145580413300032160Peatlands SoilMVQILGYSGKSTDRPHASTVGIRSVVGPIAGSGTLEAVPAQPVEPVRVRLAS
Ga0311301_1154154833300032160Peatlands SoilMVQILGFSGNSTDRPHASTVEVLSVVGPMAGSGTLVA
Ga0311301_1263331213300032160Peatlands SoilMVQILGFSGNSTDRPRASTVEVLSVVGPIADSGTLEAVQAQ
Ga0335081_1226097013300032892SoilNDKKSGMVQILGFSGNSTDRPHASTVEVLSVVGPMAGSGTLVAVKAQYV
Ga0326728_1027346633300033402Peat SoilMVQILGFSGNSTDRPNVSTVEVLSVVGPMAGSGTLVAVKAQYV
Ga0326728_1040425113300033402Peat SoilMVQILGFSGNSTDRPHASTVEVLSVVGPMAGSGTLVAV
Ga0326728_1058651723300033402Peat SoilMVQILGFSGNSTDRPRASTVEVLSVAGPIAGSGTLEAV
Ga0326728_1097264023300033402Peat SoilMGMVQILGFSGNSTDRPRASTVEVLSVVGPIAGSGT
Ga0326727_1106821123300033405Peat SoilPSLVLGRNFGMVQILGFAGNSTDRPRASTVEVLSVAGPIAGSETLEAVQAQHV
Ga0371489_0460535_4_1713300033755Peat SoilMTKVKPVWLCFGMVQILGFSGNSTDRPRASTVEVLSVAGPIAGSETLEAVQAQHV


 ⦗Top⦘


© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.