3300002820: Soil microbial communities from Kellog Biological Station, Michigan, USA - Nitrogen cycling UWRJ-G01K2-12

Overview

Basic Information

• IMG/M Taxon OID: 3300002820
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0095510 | Gp0072106 | Ga0007231
• Sample Name: Soil microbial communities from Kellog Biological Station, Michigan, USA - Nitrogen cycling UWRJ-G01K2-12
• Sequencing Status: Permanent Draft
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 1961622
• Sequencing Scaffolds: 4
• Novel Protein Genes: 4
• Associated Families: 4

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
Not Available	3
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Soil Microbial Communities From Arlington Agricultural Research Station In Wisconsin And Kellogg Biological Station In Michigan, Replicating The Bioenergy Cropping Systems Trials (Bcsts)
• Type: Environmental
• Taxonomy: Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil → Soil Microbial Communities From Arlington Agricultural Research Station In Wisconsin And Kellogg Biological Station In Michigan, Replicating The Bioenergy Cropping Systems Trials (Bcsts)

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): terrestrial biome → agricultural field → agricultural soil
• Earth Microbiome Project Ontology (EMPO): Free-living → Non-saline → Soil (non-saline)

Location Information

• Location: USA: Michigan
• Coordinates
  • Lat. (^o): 42.4
  • Long. (^o): -85.37
  • Alt. (m): N/A
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F052029	Metagenome	143	Y
F054170	Metagenome	140	Y
F065229	Metagenome / Metatranscriptome	128	Y
F097305	Metagenome / Metatranscriptome	104	N

Associated Scaffolds

Scaffold	Taxonomy	Length
JGI25490J38602_10103	Not Available	620
JGI25490J38602_10149	Not Available	564
JGI25490J38602_10161	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	551
JGI25490J38602_10200	Not Available	526

Sequences

Scaffold ID	Protein ID	Family	Sequence
JGI25490J38602_10103	JGI25490J38602_101031	F052029	LALNFRSLLPANPVAQQEINNTGALSEQLVTIGAASLALLVVAAIAVLMGMA*
JGI25490J38602_10149	JGI25490J38602_101491	F097305	KSGKDKKSDSRSQRLAAELRENLRRRKAQVRGRKAPAAGEGTKRPGLPPRGG*
JGI25490J38602_10161	JGI25490J38602_101612	F065229	LSAIILSDAIPAMLLIRFAISVFALMLLGLAVSLSVAQSEDETNAAQAATFIHQ*
JGI25490J38602_10200	JGI25490J38602_102003	F054170	MNVTIGFQETEEILSWDVSDEALEIAGTAGQEIAGAYTLQFCTSMDCA