3300002734: Microbial sample from Petrosia ficiformis

Overview

Basic Information

• IMG/M Taxon OID: 3300002734
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0111361 | Gp0094559 | Ga0046461
• Sample Name: Microbial sample from Petrosia ficiformis
• Sequencing Status: Permanent Draft
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 522988050
• Sequencing Scaffolds: 5
• Novel Protein Genes: 5
• Associated Families: 5

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria → Proteobacteria	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Hyphomicrobiales bacterium	1
All Organisms → cellular organisms → Bacteria	2

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Petrosia Ficiformis Microbial Communities From Milos, Greece
• Type: Host-Associated
• Taxonomy: Host-Associated → Porifera → Unclassified → Unclassified → Unclassified → Petrosia Ficiformis → Petrosia Ficiformis Microbial Communities From Milos, Greece

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Host-associated → Animal → Animal corpus

Location Information

• Location: Milos,Greece
• Coordinates
  • Lat. (^o): 36.76759
  • Long. (^o): 24.51422
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004237	Metagenome / Metatranscriptome	447	Y
F011880	Metagenome / Metatranscriptome	286	Y
F024410	Metagenome / Metatranscriptome	206	Y
F072776	Metagenome	121	N
F097867	Metagenome	104	Y

Associated Scaffolds

Scaffold	Taxonomy	Length
PetF_10009235	All Organisms → cellular organisms → Bacteria → Proteobacteria	6053
PetF_10014075	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	4492
PetF_10061830	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Hyphomicrobiales bacterium	1491
PetF_10064891	All Organisms → cellular organisms → Bacteria	1435
PetF_10097060	All Organisms → cellular organisms → Bacteria	1038

Sequences

Scaffold ID	Protein ID	Family	Sequence
PetF_10009235	PetF_100092354	F004237	MIEYDIADMMDGVKNMIEASDIRAGDQVLLLADRRSDTASVEAITAGLKFMGAEPMSLVTEPISRYGRVPQAVLQAMEASDVVIWMWPVFITFTPAHRAMGRKREESGTQLKEQRMKPYFIYFEGTPGLLARDYARFPNPVLWKLAEKVREVVAAGKVVRIEDDLGSHLTATYDGTRLYGMQFRAGDPPGRCHFPWGRCGVFNGSGKADGEVYLSCVQGVAGALPAPVKWVVKDSEVVEAEGGELAEECRQLFKNVPGSNRMVEIMFGYHPKASIRHGIDDPMHWELISKMPWVGLGTDRKHPDFRHVDGSVMNARLYIDDRLIVHEQGMLDRSLLHHPEVLEAASAYGDPYQVLAPVSHDAHGSGTLW*
PetF_10014075	PetF_100140755	F097867	MLDTGDMLWIPPGCSHRNIGDMLTTRIILYTRNPLTLSQEYSSRAERVAGAA*
PetF_10061830	PetF_100618301	F011880	MATNEQIDAAEKRVYSQQQVGEFMTTWKDFPRPGLAAWSERKKAGLMNTARSTRYTPKFRPFDMLSVPNQSLVVLENDNHRIGAECVVGVQDSFHRYVDCDMVYFQFCGNTTVETEFGVYEMEPGEVMLVPGGISHRSIGRNDSLRYFCLNREAVDYVLDEEKYTSHQSFVMTRHNGPNWSGLEAPTGDVKGQVTEKMHFWDDGPDDLTVVERDYDSLVGVSTLKPKQQESGIRKLRAFDHFTMVLGKAGGEAGLLALMESQSMRVRTYNMQDEQFAFHRALQSEEVRIQFRGDALDLSEFENVAVSPGEITIIPLGISHSVISVPPDGQDFLRLNFYSKLRWYVPIDPTRHVFNSTFTVETTVHKEADWWQTAANG*
PetF_10064891	PetF_100648912	F072776	MYIDCDTHYFPVKFLEGISDQYPDSPRVVRKGDEVKSVLPDGTLIKNQAPKGRWDLDVRVAQADFEGFDKHVLIPENRELLY
PetF_10097060	PetF_100970601	F024410	MYEVKNAIEEAKANPDVRHLSLWRTDLTYFWTINCEENMQDDMHYHENDDHIFMVLE