3300002688: Marine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - MetaT SI072_100m_A (Metagenome Metatranscriptome)

Overview

Basic Information

• IMG/M Taxon OID: 3300002688
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0046785 | Gp0055299 | Ga0005227
• Sample Name: Marine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - MetaT SI072_100m_A (Metagenome Metatranscriptome)
• Sequencing Status: Permanent Draft
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Published?: Y
• Use Policy: Open

Dataset Contents

• Total Genome Size: 28948939
• Sequencing Scaffolds: 17
• Novel Protein Genes: 19
• Associated Families: 18

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
Not Available	9
All Organisms → Viruses → Predicted Viral	2
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Methylococcales → Methylococcaceae → unclassified Methylococcaceae → Methylococcaceae bacterium	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Alteromonadales → Alteromonadaceae → Glaciecola → Glaciecola pallidula	1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium	1
All Organisms → cellular organisms → Archaea	1
All Organisms → cellular organisms → Bacteria → Proteobacteria	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfuromonadales → Desulfuromonadaceae → Desulfuromonas → Desulfuromonas acetoxidans	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Marine Microbial Communities From Expanding Oxygen Minimum Zones In The Northeastern Subarctic Pacific Ocean
• Type: Environmental
• Taxonomy: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From Expanding Oxygen Minimum Zones In The Northeastern Subarctic Pacific Ocean

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): marine biome → coastal inlet → sea water
• Earth Microbiome Project Ontology (EMPO): Free-living → Saline → Water (saline)

Location Information

• Location: British Columbia, Canada
• Coordinates
  • Lat. (^o): 48.7299
  • Long. (^o): -123.5699
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F006550	Metagenome / Metatranscriptome	370	N
F012639	Metagenome / Metatranscriptome	279	Y
F015413	Metagenome / Metatranscriptome	255	Y
F018725	Metagenome / Metatranscriptome	233	N
F020371	Metagenome / Metatranscriptome	224	Y
F021318	Metagenome / Metatranscriptome	219	Y
F030108	Metagenome / Metatranscriptome	186	Y
F051729	Metagenome / Metatranscriptome	143	Y
F058538	Metagenome / Metatranscriptome	135	N
F066454	Metagenome / Metatranscriptome	126	N
F067819	Metagenome / Metatranscriptome	125	N
F081198	Metagenome / Metatranscriptome	114	N
F081213	Metagenome / Metatranscriptome	114	N
F092198	Metagenome / Metatranscriptome	107	N
F098669	Metagenome / Metatranscriptome	103	N
F099485	Metagenome / Metatranscriptome	103	Y
F101265	Metagenome / Metatranscriptome	102	N
F102081	Metagenome / Metatranscriptome	102	N

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0005227J37284_1000011	Not Available	511
Ga0005227J37284_1001670	Not Available	542
Ga0005227J37284_1001742	Not Available	656
Ga0005227J37284_1002234	Not Available	1708
Ga0005227J37284_1004045	All Organisms → Viruses → Predicted Viral	1157
Ga0005227J37284_1005043	Not Available	2262
Ga0005227J37284_1006443	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Methylococcales → Methylococcaceae → unclassified Methylococcaceae → Methylococcaceae bacterium	500
Ga0005227J37284_1007870	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Alteromonadales → Alteromonadaceae → Glaciecola → Glaciecola pallidula	675
Ga0005227J37284_1008301	Not Available	780
Ga0005227J37284_1008373	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium	941
Ga0005227J37284_1008549	Not Available	1388
Ga0005227J37284_1008963	All Organisms → Viruses → Predicted Viral	1356
Ga0005227J37284_1009897	All Organisms → cellular organisms → Archaea	722
Ga0005227J37284_1011524	Not Available	668
Ga0005227J37284_1026371	Not Available	557
Ga0005227J37284_1026535	All Organisms → cellular organisms → Bacteria → Proteobacteria	930
Ga0005227J37284_1041122	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfuromonadales → Desulfuromonadaceae → Desulfuromonas → Desulfuromonas acetoxidans	526

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0005227J37284_1000011	Ga0005227J37284_10000111	F098669	METATRGRKQKWRLKEAEGLGRKRRIEEAERRELHESDQGLDSGHGLNPGRKVRRIDQAMEGSPEIVPAKIRKKPC
Ga0005227J37284_1001670	Ga0005227J37284_10016701	F101265	GGNEISGLKLATDLRLNRTYHCRITDVGEDYDLRIIINKSIGVYIVKTSSSEIVETN*
Ga0005227J37284_1001742	Ga0005227J37284_10017421	F020371	LKFVIHEEARLKNVHNVLQDSIQVAANKVEQRQSFDVISLADASLTAKAAAGAWDTFVAATDRSTANPLLDLGVAQLLIEGSGVGGRMSRIGMHPIDFAKYMGNTFIRGVASTKPSEVSFEPGTRELPGFPGAGLVLDNAIRQGDVYCVDTEKEPCIANFQGPQRIGSAHDEETGDDKYFIIDYHLAAIIQAETGRQLTGCSTPTNWT*
Ga0005227J37284_1002234	Ga0005227J37284_10022343	F021318	MAKVFNTKKADYNGMQLWLNPVDKTVYATEGAPTHSFAEANGYAIYDFSKHFTNQKNAKDDFGNGAYSHDAFVDSEFKSLAEDYVSDVKAGGRQRQAALRSNTNAAVDIVNVWETVLGKQDRTYAGKNLAKEIAVPNLLISIDTATKFSGMTQLDEGQLGQLKELSYTRSNFEANKYGLKFVIHEEARLKNVHNVLQDSIQVAANKVEQRQSFD
Ga0005227J37284_1004045	Ga0005227J37284_10040451	F081198	SNEDTLKAVIETVKDAWQPKSEVAESTNQGYVEEQFDDESAKKFLDKVFENGYGRLVIDKEGWIENHTQEGRITANGSVEEAVGVSGTIPGVKQRANISVQIGNKTATSIRQYGQFEALPTGQTTARFYRITVPDAGAITESVSSDISASTHTLTSIDVTCAIRGWRQTILKAQLEDYPASFLNAIRETARLEAIRDEHKLILEDLASTARDYGGVTTAPYHIGGSDGVATTSTSEEDADGEFDEDGLTFAKRYLQELGQDVGPGKLVAFITPRAFESLATSSSISEYAQIGNPSVTKLGQLERLYGIDLVVTNEVKGDVSNADRNIVAVKGAAWGLASQRTMELELQKQVAGQYWDLVWTHRIGVNVIDPNTYIIVSSVNS*
Ga0005227J37284_1005043	Ga0005227J37284_10050433	F006550	MAKVFNTKKADYNGMQLWLNPVDKTVYASPSAPTYGFTESGAYPIYDYKAHQSGMKTAKDTFGNDSYVHDAFVDAEFKALAEDYVSDVKAGGRQRMAALRSNTNSAVDIVNVWETVLGKQDRTYAGKNLAKEIAVPNLLISIDTATKFSGMTQLDEGQLSQLKELTYTRQNFEASKYGLKFVIHEEARLKNVHNVLQDSIQVASNKVEQRQSFDVVSLADSSLTAKAAAGAWDTFVSSTDRSTANPLLDLGTSQLLIEGSGVGGKLNRIGMHPLDFAKYMGNTFIRGVASTSPSEVSFEPGTRELPGFPGAGLVLDNAIRQGDVYCVDTEKEPTIALFQGPQRIGSAHDEETGDDKYFIIDYHLASVIQSETGRQITGCTTPTDWT*
Ga0005227J37284_1006443	Ga0005227J37284_10064431	F058538	CGYWIYSGRNMYSQYETTVINRRRLHDILNWVNQKYHLEYEVVQKNRDVFYVIFHDLNIKQTVAIQKQIKGIAQPEHFDMH*
Ga0005227J37284_1007870	Ga0005227J37284_10078701	F030108	MKTLFNIENGFKALVIILLSTIAFGSKAADFGGTVGVSSDNYFRGVNMSDGFGYSAQGNLSLDNGIFAGAKVMSMDESSDLMTTTMIGYGFNLGGVDINVAYVDRGYQGIDTEGWEEIGVAANFDLFGVYYAKGLDDAGDFYLVDSSALKVVDVAYGDWDNAGSYWEISKSLDLAKGNLKVGYIDHESNDDDFSDKITDVDNFFV
Ga0005227J37284_1008301	Ga0005227J37284_10083012	F067819	MESLMVAWGSSQAWWGTACSIVVIANALTMALKDEYAEKLPILGKIWPIMNWLALNVHHNKNK*
Ga0005227J37284_1008373	Ga0005227J37284_10083732	F015413	MESHDLEKQVESLLATPQFEQPQFEQLIPKGILGKDMLIGSAGTALSVQVGNIVGKFLPLGQLPVGTSSILAGILLQKFGGSNSMLKKLSEGIIQGGIATAMTPFTSGLIPNFNQEVKEVAQELNPLVKGVMW*
Ga0005227J37284_1008373	Ga0005227J37284_10083733	F012639	MSSNNSGLVLNCTAQYAAAAPVATVLSVTMQTSPTVTGVTELQVPLTENWIATDVYILAAAGAGSATVIAPVITMDKNRGRTLVQTPPLNAMLITSNTRPRFSPQPIGFEGGSIIRMFATSTVLNGGAVSN
Ga0005227J37284_1008549	Ga0005227J37284_10085492	F102081	MTSWDVITPTSIGTGVAKTSLGTITKPEEVQSLIEFVPYYAPSGAVTAGESMLLETALESNSVNLLPKRIINPVIQAGLGATFATMIPMLEAWNCNTPLTAGATPQIQAFGQAQIANTVAPSMGVAFHWSNSRPNSPEMFYNKPDNETSTGTAATTVAGNSVTINDGKTLQAVYGAVSMGTVTASNSLLASMQFNSNDFDNSQAIEVPIQPNSVGLGGLTSALNVKGSYYKNVNMGMKQTATISTVLRVSEALAAAGNFIG
Ga0005227J37284_1008963	Ga0005227J37284_10089632	F081213	MRKLACALVLLCSTSSFSADLLPYNEDLLLEYKDYTGAVLGAMAHYHVRCGGISPDGGKFIEKAVAIHGFDVENTQTNEFYERGFDQAAQMTCQKLRRGFSMLNIVHLLAPGEHYDD*
Ga0005227J37284_1009897	Ga0005227J37284_10098971	F099485	NWQHSPSKTQVARTPVKAVSKSLQQSQTFTHEDLMGLSWMLSEEGD*
Ga0005227J37284_1011524	Ga0005227J37284_10115241	F015413	MLDLESTELEKQVNDLLNTKFEQPEFEQLLPKGLLGKDMLIGSAGTALAVQMGNIVGKFLPIGQLPSGTSSILAGVLMQKFLGKNGNLKKLSEGVIQGGIATALTPFVSGLIPAQFQQVEKQVETATETINPTMQGVMW*
Ga0005227J37284_1015819	Ga0005227J37284_10158192	F066454	MSIRLDVLILINSGVTDRSEIVARLGINIRSVSNSIRFLIKEGWVEYSRESISVVGGDSFRITQVGIDKIKASTVDEYRQSPKRKIPDYEVMRSHLGVGDNVSRSE
Ga0005227J37284_1026371	Ga0005227J37284_10263711	F092198	VTMNGTTEVEMTEQNISFIQKAEVISSGTGLAAAGAITIADVTGGGVHAVIDAGSKESGNCTWKVPAGHTGYVHGFWYDVDAVAAGVGTAEIALQVAHAESSGVANSETWRTVAKVTVVENDNDIVSATGGNQNNNGSFSFPGNIPFVVPAKSMVRLAAKSPAAVAVTAGFSMSVQGSGSGTTIT
Ga0005227J37284_1026535	Ga0005227J37284_10265351	F051729	LQNVGVAVPQQATVSGGMLSLKKSIKKRKLPMKRVRLKNLENEYVLSNRATPTAQPMLLLGFPEIALC*
Ga0005227J37284_1041122	Ga0005227J37284_10411221	F018725	SYSDTRTFRGVKQADDTLGVNVGLATSLAEKVSLGLSLDSFNALESAQTNELRTGIVLGYDVCETASVSLGYTNYDYQSATSNSEIGLGVSVETLLNPSLLYATDSDNDSDVTEISVGHSLSLSEQFGLTLGGSLGSVDAAADYTYYSVGATVTTSVGGADTFAGVALVDNDNAG