3300002686: Marine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - MetaT SI072_135m_B (Metagenome Metatranscriptome)

Overview

Basic Information

• IMG/M Taxon OID: 3300002686
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0046785 | Gp0055324 | Ga0005232
• Sample Name: Marine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - MetaT SI072_135m_B (Metagenome Metatranscriptome)
• Sequencing Status: Permanent Draft
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Published?: Y
• Use Policy: Open

Dataset Contents

• Total Genome Size: 27130044
• Sequencing Scaffolds: 13
• Novel Protein Genes: 13
• Associated Families: 12

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
Not Available	10
All Organisms → cellular organisms → Archaea	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → gamma proteobacterium SCGC AAA076-D02	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Methylococcales → Methylococcaceae → unclassified Methylococcaceae → Methylococcaceae bacterium	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Marine Microbial Communities From Expanding Oxygen Minimum Zones In The Northeastern Subarctic Pacific Ocean
• Type: Environmental
• Taxonomy: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From Expanding Oxygen Minimum Zones In The Northeastern Subarctic Pacific Ocean

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): marine biome → coastal inlet → sea water
• Earth Microbiome Project Ontology (EMPO): Free-living → Saline → Water (saline)

Location Information

• Location: British Columbia, Canada
• Coordinates
  • Lat. (^o): 48.7299
  • Long. (^o): -123.5699
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F006550	Metagenome / Metatranscriptome	370	N
F014384	Metatranscriptome	263	Y
F015413	Metagenome / Metatranscriptome	255	Y
F058538	Metagenome / Metatranscriptome	135	N
F070306	Metagenome / Metatranscriptome	123	Y
F077350	Metagenome / Metatranscriptome	117	Y
F081198	Metagenome / Metatranscriptome	114	N
F084730	Metagenome / Metatranscriptome	112	Y
F098669	Metagenome / Metatranscriptome	103	N
F099485	Metagenome / Metatranscriptome	103	Y
F101265	Metagenome / Metatranscriptome	102	N
F103871	Metagenome / Metatranscriptome	101	Y

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0005232J37287_100073	Not Available	515
Ga0005232J37287_102114	All Organisms → cellular organisms → Archaea	783
Ga0005232J37287_103496	Not Available	1391
Ga0005232J37287_104493	Not Available	516
Ga0005232J37287_106921	Not Available	1601
Ga0005232J37287_107109	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → gamma proteobacterium SCGC AAA076-D02	1613
Ga0005232J37287_107276	Not Available	1115
Ga0005232J37287_109992	Not Available	949
Ga0005232J37287_112475	Not Available	1072
Ga0005232J37287_119028	Not Available	518
Ga0005232J37287_119970	Not Available	558
Ga0005232J37287_120714	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Methylococcales → Methylococcaceae → unclassified Methylococcaceae → Methylococcaceae bacterium	530
Ga0005232J37287_136456	Not Available	503

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0005232J37287_100073	Ga0005232J37287_1000731	F098669	METATRGRKQKWRLKEAEGLGRKRRIGEAEGREPHESDQGLDSGHGLNPGRKVRRIDQAMEGSPEIVPAKIRKKPC
Ga0005232J37287_102114	Ga0005232J37287_1021141	F099485	IIRNWQHSPSKTQVARTPVKAVSKSLQQSQTFTHEDLMGLSWMLSEEGD*
Ga0005232J37287_103496	Ga0005232J37287_1034961	F081198	SPQSSTMTTEIPTDVKSEKVEEKVKVTIETDGEVEVGKAEATKTEASDDEKCPEGKKMVAGKCVDAKQESTPESSDLVKATEALTSVIENVGKAWEPKSQVAESTESNGFVEEAFTDVDAKQFMDKLFETGYNKLVMDKEGWIEEHTVPGAADVAGNVTEAVSTSGTISGVKQRSNISIQLGSKTATPLRQYGQFEAIPTGQNTARFYRITNPDAGAITESPTTDITAVTHTLTAIDVTCSIRGWRQVVEKANLEDYPASFLNALRETARLEAIRDEHKLILQDLGATDHDFGGVSTAPYHIGGSDGVATTTTTEEDADGAMDEDGITKAKMYLGKLGNSTAPGQLIAFLSEEAFEALISSTGLSEYTQIGNANVTRLGQLERLYGVDIIVTNELLQANNADRNLVCVKGKAWGLASQRKMEIEFQKNIAGQYFDIVWTHRIGVDIIDPNTYIIVSTVAT*
Ga0005232J37287_104493	Ga0005232J37287_1044931	F101265	LKLAIVLRLKRNYHCRSTDVGEDYDLRVIFSKSIGGYIVKTSSSEIVETN*
Ga0005232J37287_106921	Ga0005232J37287_1069211	F077350	VAVTDSALANQIQKTEVDPKQPDIQKLLEELEGKLRGALNVLKPSVNSMCDNLRQAAADIRKDKDATMLWTTLNDMQVFLSLVQQICSSVGTQGPKVVAFDNALGDALGTLETVVVDSESPDEVAAFIESTLIVALGKWDAAEDELRDIAKV*
Ga0005232J37287_107109	Ga0005232J37287_1071091	F084730	YSNRTVAILDSVEPVFTVGYFSYLNCITTGVYFYDSSNCIYGYGTPKRALIFF*
Ga0005232J37287_107276	Ga0005232J37287_1072761	F070306	LAARVVGRAQYPDEGNNDAYPIVEVWLNTHRDRYVTATASTA*
Ga0005232J37287_109992	Ga0005232J37287_1099921	F006550	YVHDAFVDAEFKALAEDYVSDVKAGGRQRMAALRSNTNSAVDIVNVWETVLGKQDRTYAGKNLAKEIAVPNLLISIDTATKFSGMTQLDEGQLSQLKELTYTRQNFEASKYGLKFVIHEEARLKNVHNVLQDSIQVASNKVEQRQSFDVVSLADSSLTAKAAAGAWDTFVSSTDRSTANPLLDLGTSQLLIEGSGVGGKLNRIGMHPLDFAKYMGNTFIRGVASTSPSEVSFEPGTRELPGFPGAGLVLDNAIRQGDVYCVDTEKEPTIALFQGPQRIGSAHDEETGDDKYFIIDYHLASVIQSETGRQITGCTT
Ga0005232J37287_112475	Ga0005232J37287_1124751	F081198	QGYVEEQFDDESAKKFLDKVFENGYGRLVIDKEGWIENHTQEGRITANGSVEEAVGVSGTIPGVKQRANISVQIGNKTATSIRQYGQFEALPTGQTTARFYRITVPDAGAITESVSSDISASTHTLTSIDVTCSIRGWRQTILKAQLEDYPASFLNAIRETARLEAIRDEHKLILEDLASTARDYGGVTTAPYHIGGSDGVATTSTSEEDADGEFDEDGLTFAKRYLQELGQDVGPGKLVAFITPRAFESLATSSSISEYAQIGNPSVTKLGQLERLYGIDLVVTNEVKGDVSNADRNIVAVKGAAWGLASQRTMELELQKQVAGQYWDLVWTHRIGVNVIDPNTYIIVSSVNS*
Ga0005232J37287_119028	Ga0005232J37287_1190281	F015413	*GNRDMESHDLEKQVESLLATPQFEQPQFEQLLPRGIFGKDMLIGSAGTALSVQVGNIVGKFLPLGQLPVGTSSILAGILLQKFGGSNSMLKKLSEGIIQGGIATAMTPFTSGLIPSFNQEVKEVAQELNPLVKGVMW*
Ga0005232J37287_119970	Ga0005232J37287_1199701	F014384	RDAKTQELANTDSKLAQDKEDLEDTRNSLSADQKFLMNLKETCQNTDQEWEERQKARQEEVVAVGEALAILSSDDAHDTFTSTFNFVQKSATESKRDQAAKVLFTAAKKYGNPKLAAIATSMRLDAFTKVKAAIDEMINALLKEKEDEIKHKDFCTDAINKNERAQELKARDISELEAKIADLTSN
Ga0005232J37287_120714	Ga0005232J37287_1207141	F058538	YWIYSGRNMYSQYETTVINRRRLHDILNWVNQKYHLEYEVVQKNRDVFYVIFHDLNIKQTVAIQKQIKGIAQPEHFDMH*
Ga0005232J37287_136456	Ga0005232J37287_1364561	F103871	VYNTVQIPGLILDYSKKKPPTKAVSCDLNALAGFIKRPQV