Sample 3300002674

Overview

Basic Information
IMG/M Taxon OID	3300002674 Open in IMG/M
GOLD Reference (Study \| Sequencing Project \| Analysis Project)	Gs0046785 \| Gp0055363 \| Ga0005252
Sample Name	Marine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - MetaT SI074_10m (Metagenome Metatranscriptome)
Sequencing Status	Permanent Draft
Sequencing Center	DOE Joint Genome Institute (JGI)
Published?	Y
Use Policy	Open

Dataset Contents
Total Genome Size	12612865
Sequencing Scaffolds	13
Novel Protein Genes	16
Associated Families	15

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → Viruses → Predicted Viral	3
Not Available	6
All Organisms → cellular organisms → Bacteria → Proteobacteria	2
All Organisms → cellular organisms → Eukaryota → Haptista → Centroplasthelida → Panacanthocystida → Acanthocystida → Marophrys → unclassified Marophrys → Marophrys sp. SRT127	1
All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia → Pirellulales → Pirellulaceae → Rhodopirellula → unclassified Rhodopirellula → Rhodopirellula sp.	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
Name	Marine Microbial Communities From Expanding Oxygen Minimum Zones In The Northeastern Subarctic Pacific Ocean
Type	Environmental
Taxonomy	Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From Expanding Oxygen Minimum Zones In The Northeastern Subarctic Pacific Ocean

Alternative Ecosystem Assignments
Environment Ontology (ENVO)	marine biome → coastal inlet → sea water
Earth Microbiome Project Ontology (EMPO)	Free-living → Saline → Water (saline)

Location Information
Location	British Columbia, Canada
Coordinates	Lat. (^o)	48.7299	Long. (^o)	-123.5699	Alt. (m)	N/A	Depth (m)	N/A
Location on Map

Zoom:	Powered by OpenStreetMap^©

Family	Category	Number of Sequences	3D Structure?
F001217	Metagenome / Metatranscriptome	745	Y
F006002	Metagenome / Metatranscriptome	384	Y
F014383	Metagenome / Metatranscriptome	263	Y
F017299	Metagenome / Metatranscriptome	241	Y
F021302	Metagenome / Metatranscriptome	219	Y
F034583	Metagenome / Metatranscriptome	174	N
F037677	Metagenome / Metatranscriptome	167	N
F038104	Metagenome / Metatranscriptome	166	N
F052536	Metagenome / Metatranscriptome	142	N
F059342	Metagenome / Metatranscriptome	134	N
F060807	Metagenome / Metatranscriptome	132	N
F067108	Metagenome / Metatranscriptome	126	Y
F074949	Metatranscriptome	119	Y
F080124	Metatranscriptome	115	Y
F103885	Metagenome / Metatranscriptome	101	Y

Family

Category

Number of Sequences

3D Structure?

F001217

Metagenome / Metatranscriptome

745

F006002

Metagenome / Metatranscriptome

384

F014383

Metagenome / Metatranscriptome

263

F017299

Metagenome / Metatranscriptome

241

F021302

Metagenome / Metatranscriptome

219

F034583

Metagenome / Metatranscriptome

174

F037677

Metagenome / Metatranscriptome

167

F038104

Metagenome / Metatranscriptome

166

F052536

Metagenome / Metatranscriptome

142

F059342

Metagenome / Metatranscriptome

134

F060807

Metagenome / Metatranscriptome

132

F067108

Metagenome / Metatranscriptome

126

F074949

Metatranscriptome

119

F080124

Metatranscriptome

115

F103885

Metagenome / Metatranscriptome

101

Scaffold	Taxonomy	Length	IMG/M Link
Ga0005252J37289_101078	All Organisms → Viruses → Predicted Viral	1414	Open in IMG/M
Ga0005252J37289_102137	Not Available	1012	Open in IMG/M
Ga0005252J37289_102860	All Organisms → Viruses → Predicted Viral	2747	Open in IMG/M
Ga0005252J37289_102861	All Organisms → cellular organisms → Bacteria → Proteobacteria	1508	Open in IMG/M
Ga0005252J37289_102876	Not Available	909	Open in IMG/M
Ga0005252J37289_103543	All Organisms → cellular organisms → Eukaryota → Haptista → Centroplasthelida → Panacanthocystida → Acanthocystida → Marophrys → unclassified Marophrys → Marophrys sp. SRT127	641	Open in IMG/M
Ga0005252J37289_103586	Not Available	1076	Open in IMG/M
Ga0005252J37289_103776	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia → Pirellulales → Pirellulaceae → Rhodopirellula → unclassified Rhodopirellula → Rhodopirellula sp.	967	Open in IMG/M
Ga0005252J37289_104599	Not Available	581	Open in IMG/M
Ga0005252J37289_104766	All Organisms → Viruses → Predicted Viral	1905	Open in IMG/M
Ga0005252J37289_108443	All Organisms → cellular organisms → Bacteria → Proteobacteria	1785	Open in IMG/M
Ga0005252J37289_110713	Not Available	1216	Open in IMG/M
Ga0005252J37289_110771	Not Available	552	Open in IMG/M

Scaffold

Taxonomy

Length

IMG/M Link

Ga0005252J37289_101078

All Organisms → Viruses → Predicted Viral

1414

Open in IMG/M

Ga0005252J37289_102137

Not Available

1012

Open in IMG/M

Ga0005252J37289_102860

All Organisms → Viruses → Predicted Viral

2747

Open in IMG/M

Ga0005252J37289_102861

All Organisms → cellular organisms → Bacteria → Proteobacteria

1508

Open in IMG/M

Ga0005252J37289_102876

Not Available

909

Open in IMG/M

Ga0005252J37289_103543

All Organisms → cellular organisms → Eukaryota → Haptista → Centroplasthelida → Panacanthocystida → Acanthocystida → Marophrys → unclassified Marophrys → Marophrys sp. SRT127

641

Open in IMG/M

Ga0005252J37289_103586

Not Available

1076

Open in IMG/M

Ga0005252J37289_103776

All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia → Pirellulales → Pirellulaceae → Rhodopirellula → unclassified Rhodopirellula → Rhodopirellula sp.

967

Open in IMG/M

Ga0005252J37289_104599

Not Available

581

Open in IMG/M

Ga0005252J37289_104766

All Organisms → Viruses → Predicted Viral

1905

Open in IMG/M

Ga0005252J37289_108443

All Organisms → cellular organisms → Bacteria → Proteobacteria

1785

Open in IMG/M

Ga0005252J37289_110713

Not Available

1216

Open in IMG/M

Ga0005252J37289_110771

Not Available

552

Open in IMG/M

Scaffold ID	Protein ID	Family	Sequence
Ga0005252J37289_101078	Ga0005252J37289_1010781	F006002	TMRAKYCKCKNTYSIDCDKYSKKRKCNADEYWKQGIGSIHKQEEE*
Ga0005252J37289_102137	Ga0005252J37289_1021371	F038104	MTKKNISEISKQIPGSFEFRIEVASACAESGIEYHTFAEQYDLDADELNQWAIDYLGEGLDDTSKNEKKDTVTSESVKDEILFDTVQHIALIKVSDDIGWATADGTAKKNLTILSNSSTFKEYYFIGSDITKSSGNPSDEAXGDAEQLFINELISENTHPLPSWLSEDSNWREFLMGTIHQDFDDFEYETGLSVDFGSEGEINFDDNIGKIGLRVSSISETSIKLSEDGLTILGETYSTDDDLYQVLEQGEVRYGLFP*
Ga0005252J37289_102860	Ga0005252J37289_1028601	F052536	RLLPTSSSQTFSILPRTLDTTGIDATIREDGTGNIVTISDVTASVNNDYIDITLSSDKFIAERAYVLEMTRGANLWYRDKIYVTSQTDTDIYHTISTGYYEENDTDGDDKYITI*
Ga0005252J37289_102861	Ga0005252J37289_1028612	F014383	MANEIYDSSWWGNTIETASSIGTSTEMIQGQFNMNDRQEVEAVKCLADSIHRIGIQDIQN
Ga0005252J37289_102876	Ga0005252J37289_1028763	F037677	VDMQDIKLGALNLITFMVSFSNIEQWLKLTLLLVSIVYTIMKIINMSKQNKNG*
Ga0005252J37289_103543	Ga0005252J37289_1035431	F034583	FVVCESSVSLLLFFWTLIFLFVYILVPLVKLRFVIVSEKNALHQVEETCKPFYGNTFKFNDTFF*
Ga0005252J37289_103586	Ga0005252J37289_1035862	F017299	MSKEPLKITLEFYNKKISTQVDHSDLTFEELHELWLEIVKAMGYHHKTIKEFYE*
Ga0005252J37289_103776	Ga0005252J37289_1037761	F060807	QIIMFGEGTQYKGILGVTQKMLAKQEQEQYRANANVGDPFFKPGVERIKPEQRTDSASYGNKSVFSPSQNSNGEFVFGSQEQRTRSMPVRGNVEGPLAMKDQNGDGEITRADVIKARVEGYKE*
Ga0005252J37289_104599	Ga0005252J37289_1045991	F080124	TGVDHLLDAVGSRNVTQMSSLLQNLVEETISETPVDLDADVKAALEVIKQELLGDIRGALMESHCYDQSELHAQILCYEGCDKRREIGHATCGKYCDGLEHKQCRTDLLGLYKTHITACRTLDNWVGEWHRDCEYAVKKCCLLEHTTWNCGGLCGGTIASYDVDGYFGTWLNGQLQKYREGYTRWMELYGECK
Ga0005252J37289_104766	Ga0005252J37289_1047661	F067108	EVVDFSVFTKFTKDLGLFQVDASIWSMVSQDCRQNHDISDIELEFSMNNKPCKYLGFKELYEKLYGINTFNKFRDNLKEEFEKAYFKHTPYKTK*
Ga0005252J37289_104766	Ga0005252J37289_1047662	F001217	LKKHTLNTHLIKLNNMSATKFNGFEKYFIQTALKHAIEEAEKDVLAIEADGNRCIYAPGYFTMVGNEIIKKVNHMTLKKHQD*
Ga0005252J37289_104766	Ga0005252J37289_1047663	F059342	MSENKYNGYTDFPTWKVFHETLSNIEFDEYVTPEDLEEISKDVVLFGFKMQFGSHLVEELARLFIESADFQDIADSINNDIR*
Ga0005252J37289_104766	Ga0005252J37289_1047665	F103885	MATLLERLKPKYRKKIENSQYTYTSSRIIARLENSKFYGDLTISEVREIYDMCDIEALRVSAWDYRFGDNILNRDND*
Ga0005252J37289_108443	Ga0005252J37289_1084433	F060807	MFGAGTQYKGILGITQKFLAKQEQEQYRANASVGDPFFKPGVERIRPEQRTDSAAYKNKSVFSPQQNSYGDYVFGTQDQRTRSMPVRGNVEGPLAMKDQNGDSKITRADVIKARIEGYKE
Ga0005252J37289_110713	Ga0005252J37289_1107132	F021302	MRKLIQRYRHRQRKAKHVKFLNNRITYLHNEIVKASFKSEYSFNKNITIVCGNIEVKAKLLSKYNRRLKLIIL*
Ga0005252J37289_110771	Ga0005252J37289_1107711	F074949	VRESLGGESGLSSLVDFAKEGAPRKAQQLLQQFAKNTLVRGEAVDDVTKDKLAEIAAQLTNNTWMALEQSHRRDQDLIDKHWRAIKECGNKHLAHLQQDIDGFEVQQVRTHETDMLKCRGLPNHTDPHASLLQADPFADTGFAVSEDGHRYFKHVSAYYDDPNHKNLLRIKNEVCAHCGALDA

Scaffold ID

Protein ID

Family

Sequence

Ga0005252J37289_101078

Ga0005252J37289_1010781

F006002

TMRAKYCKCKNTYSIDCDKYSKKRKCNADEYWKQGIGSIHKQEEE*

Ga0005252J37289_102137

Ga0005252J37289_1021371

F038104

MTKKNISEISKQIPGSFEFRIEVASACAESGIEYHTFAEQYDLDADELNQWAIDYLGEGLDDTSKNEKKDTVTSESVKDEILFDTVQHIALIKVSDDIGWATADGTAKKNLTILSNSSTFKEYYFIGSDITKSSGNPSDEAXGDAEQLFINELISENTHPLPSWLSEDSNWREFLMGTIHQDFDDFEYETGLSVDFGSEGEINFDDNIGKIGLRVSSISETSIKLSEDGLTILGETYSTDDDLYQVLEQGEVRYGLFP*

Ga0005252J37289_102860

Ga0005252J37289_1028601

F052536

RLLPTSSSQTFSILPRTLDTTGIDATIREDGTGNIVTISDVTASVNNDYIDITLSSDKFIAERAYVLEMTRGANLWYRDKIYVTSQTDTDIYHTISTGYYEENDTDGDDKYITI*

Ga0005252J37289_102861

Ga0005252J37289_1028612

F014383

MANEIYDSSWWGNTIETASSIGTSTEMIQGQFNMNDRQEVEAVKCLADSIHRIGIQDIQN

Ga0005252J37289_102876

Ga0005252J37289_1028763

F037677

VDMQDIKLGALNLITFMVSFSNIEQWLKLTLLLVSIVYTIMKIINMSKQNKNG*

Ga0005252J37289_103543

Ga0005252J37289_1035431

F034583

FVVCESSVSLLLFFWTLIFLFVYILVPLVKLRFVIVSEKNALHQVEETCKPFYGNTFKFNDTFF*

Ga0005252J37289_103586

Ga0005252J37289_1035862

F017299

MSKEPLKITLEFYNKKISTQVDHSDLTFEELHELWLEIVKAMGYHHKTIKEFYE*

Ga0005252J37289_103776

Ga0005252J37289_1037761

F060807

QIIMFGEGTQYKGILGVTQKMLAKQEQEQYRANANVGDPFFKPGVERIKPEQRTDSASYGNKSVFSPSQNSNGEFVFGSQEQRTRSMPVRGNVEGPLAMKDQNGDGEITRADVIKARVEGYKE*

Ga0005252J37289_104599

Ga0005252J37289_1045991

F080124

TGVDHLLDAVGSRNVTQMSSLLQNLVEETISETPVDLDADVKAALEVIKQELLGDIRGALMESHCYDQSELHAQILCYEGCDKRREIGHATCGKYCDGLEHKQCRTDLLGLYKTHITACRTLDNWVGEWHRDCEYAVKKCCLLEHTTWNCGGLCGGTIASYDVDGYFGTWLNGQLQKYREGYTRWMELYGECK

Ga0005252J37289_104766

Ga0005252J37289_1047661

F067108

EVVDFSVFTKFTKDLGLFQVDASIWSMVSQDCRQNHDISDIELEFSMNNKPCKYLGFKELYEKLYGINTFNKFRDNLKEEFEKAYFKHTPYKTK*

Ga0005252J37289_104766

Ga0005252J37289_1047662

F001217

LKKHTLNTHLIKLNNMSATKFNGFEKYFIQTALKHAIEEAEKDVLAIEADGNRCIYAPGYFTMVGNEIIKKVNHMTLKKHQD*

Ga0005252J37289_104766

Ga0005252J37289_1047663

F059342

MSENKYNGYTDFPTWKVFHETLSNIEFDEYVTPEDLEEISKDVVLFGFKMQFGSHLVEELARLFIESADFQDIADSINNDIR*

Ga0005252J37289_104766

Ga0005252J37289_1047665

F103885

MATLLERLKPKYRKKIENSQYTYTSSRIIARLENSKFYGDLTISEVREIYDMCDIEALRVSAWDYRFGDNILNRDND*

Ga0005252J37289_108443

Ga0005252J37289_1084433

F060807

MFGAGTQYKGILGITQKFLAKQEQEQYRANASVGDPFFKPGVERIRPEQRTDSAAYKNKSVFSPQQNSYGDYVFGTQDQRTRSMPVRGNVEGPLAMKDQNGDSKITRADVIKARIEGYKE

Ga0005252J37289_110713

Ga0005252J37289_1107132

F021302

MRKLIQRYRHRQRKAKHVKFLNNRITYLHNEIVKASFKSEYSFNKNITIVCGNIEVKAKLLSKYNRRLKLIIL*

Ga0005252J37289_110771

Ga0005252J37289_1107711

F074949

VRESLGGESGLSSLVDFAKEGAPRKAQQLLQQFAKNTLVRGEAVDDVTKDKLAEIAAQLTNNTWMALEQSHRRDQDLIDKHWRAIKECGNKHLAHLQQDIDGFEVQQVRTHETDMLKCRGLPNHTDPHASLLQADPFADTGFAVSEDGHRYFKHVSAYYDDPNHKNLLRIKNEVCAHCGALDA

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

3300002674: Marine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - MetaT SI074_10m (Metagenome Metatranscriptome)

Overview

Ecosystem and Geography

Associated Families

Associated Scaffolds

Sequences