Sample 3300002672

Basic Information
IMG/M Taxon OID	3300002672 Open in IMG/M
GOLD Reference (Study \| Sequencing Project \| Analysis Project)	Gs0085736 \| Gp0056706 \| Ga0005490
Sample Name	Forest soil microbial communities from Harvard Forest Long Term Ecological Research site in Petersham, Massachusetts, USA - MetaT HF139 (Metagenome Metatranscriptome, Counting Only)
Sequencing Status	Permanent Draft
Sequencing Center	DOE Joint Genome Institute (JGI)
Published?	N
Use Policy	Open

Basic Information

IMG/M Taxon OID

GOLD Reference
(Study | Sequencing Project | Analysis Project)

Sample Name

Forest soil microbial communities from Harvard Forest Long Term Ecological Research site in Petersham, Massachusetts, USA - MetaT HF139 (Metagenome Metatranscriptome, Counting Only)

Sequencing Status

Permanent Draft

Sequencing Center

DOE Joint Genome Institute (JGI)

Published?

Use Policy

Open

Dataset Contents
Total Genome Size	10161183
Sequencing Scaffolds	32
Novel Protein Genes	42
Associated Families	41

Dataset Contents

Total Genome Size

10161183

Sequencing Scaffolds

Novel Protein Genes

Associated Families

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Ecdysozoa → Panarthropoda → Arthropoda → Mandibulata → Pancrustacea → Hexapoda → Insecta → Dicondylia → Pterygota → Neoptera → Endopterygota → Diptera → Nematocera → Culicomorpha → Culicoidea → Culicidae → Culicinae → Culicini → Culex → Culex → Culex pipiens complex → Culex quinquefasciatus	1
Not Available	23
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. Tv2a-2	1
All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Opitutae → Opitutales → Opitutaceae → Lacunisphaera → Lacunisphaera limnophila	1
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Basidiomycota → Agaricomycotina → Agaricomycetes → Agaricomycetes incertae sedis → Polyporales → Fibroporiaceae → Fibroporia → Fibroporia radiculosa	1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Bacteroidaceae → Bacteroides → Bacteroides fragilis	1
All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → eudicotyledons → Gunneridae → Pentapetalae → rosids → fabids → Malpighiales → Rhizophoraceae → Rhizophora → Rhizophora mucronata	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales	1
All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → unclassified Proteobacteria → Proteobacteria bacterium	1

Dataset Phylogeny

Taxonomy Groups

Number of Scaffolds

All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Ecdysozoa → Panarthropoda → Arthropoda → Mandibulata → Pancrustacea → Hexapoda → Insecta → Dicondylia → Pterygota → Neoptera → Endopterygota → Diptera → Nematocera → Culicomorpha → Culicoidea → Culicidae → Culicinae → Culicini → Culex → Culex → Culex pipiens complex → Culex quinquefasciatus

Not Available

All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. Tv2a-2

All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Opitutae → Opitutales → Opitutaceae → Lacunisphaera → Lacunisphaera limnophila

All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Basidiomycota → Agaricomycotina → Agaricomycetes → Agaricomycetes incertae sedis → Polyporales → Fibroporiaceae → Fibroporia → Fibroporia radiculosa

All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Bacteroidaceae → Bacteroides → Bacteroides fragilis

All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → eudicotyledons → Gunneridae → Pentapetalae → rosids → fabids → Malpighiales → Rhizophoraceae → Rhizophora → Rhizophora mucronata

All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales

All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium

All Organisms → cellular organisms → Bacteria → Proteobacteria → unclassified Proteobacteria → Proteobacteria bacterium

Ecosystem Assignment (GOLD)
Name	Forest Soil Microbial Communities From Harvard Forest Long Term Ecological Research (Lter) Site In Petersham, Ma, For Long-Term Soil Warming Studies
Type	Environmental
Taxonomy	Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil → Forest Soil Microbial Communities From Harvard Forest Long Term Ecological Research (Lter) Site In Petersham, Ma, For Long-Term Soil Warming Studies

Ecosystem Assignment (GOLD)

Name

Forest Soil Microbial Communities From Harvard Forest Long Term Ecological Research (Lter) Site In Petersham, Ma, For Long-Term Soil Warming Studies

Type

Environmental

Taxonomy

Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil → Forest Soil Microbial Communities From Harvard Forest Long Term Ecological Research (Lter) Site In Petersham, Ma, For Long-Term Soil Warming Studies

Alternative Ecosystem Assignments
Environment Ontology (ENVO)	forest biome → land → forest soil
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline)

Alternative Ecosystem Assignments

Environment Ontology (ENVO)

forest biome → land → forest soil

Earth Microbiome Project Ontology (EMPO)

Free-living → Non-saline → Soil (non-saline)

Location Information
Location	Harvard Forest LTER, Petersham, MA, USA
Coordinates	Lat. (^o)	42.53312	Long. (^o)	-72.189707	Alt. (m)	N/A	Depth (m)	0 to .1
Location on Map

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Location Information

Location

Harvard Forest LTER, Petersham, MA, USA

Coordinates

Lat. (^o)

42.53312

Long. (^o)

-72.189707

Alt. (m)

N/A

Depth (m)

0 to .1

Location on Map

Zoom:

Family	Category	Number of Sequences	3D Structure?
F001418	Metagenome / Metatranscriptome	698	Y
F001441	Metagenome / Metatranscriptome	694	Y
F002654	Metagenome / Metatranscriptome	539	Y
F003383	Metagenome / Metatranscriptome	490	Y
F004375	Metagenome / Metatranscriptome	441	Y
F006591	Metagenome / Metatranscriptome	369	Y
F011643	Metagenome / Metatranscriptome	288	Y
F016923	Metagenome / Metatranscriptome	243	Y
F018933	Metagenome / Metatranscriptome	232	N
F019794	Metagenome / Metatranscriptome	227	N
F020912	Metagenome / Metatranscriptome	221	Y
F021919	Metagenome / Metatranscriptome	216	Y
F023505	Metagenome / Metatranscriptome	209	Y
F024939	Metagenome / Metatranscriptome	203	N
F030305	Metagenome / Metatranscriptome	185	N
F032287	Metagenome / Metatranscriptome	180	Y
F033440	Metagenome / Metatranscriptome	177	Y
F034200	Metagenome / Metatranscriptome	175	Y
F045561	Metagenome / Metatranscriptome	152	Y
F048323	Metagenome / Metatranscriptome	148	Y
F060503	Metagenome / Metatranscriptome	132	N
F061605	Metagenome / Metatranscriptome	131	N
F064734	Metagenome / Metatranscriptome	128	Y
F064997	Metagenome / Metatranscriptome	128	Y
F067295	Metagenome / Metatranscriptome	125	N
F067296	Metagenome / Metatranscriptome	125	Y
F068321	Metagenome / Metatranscriptome	124	N
F068528	Metagenome / Metatranscriptome	124	Y
F070926	Metagenome / Metatranscriptome	122	N
F071421	Metagenome / Metatranscriptome	122	N
F077566	Metagenome / Metatranscriptome	117	Y
F080063	Metagenome / Metatranscriptome	115	N
F080954	Metagenome / Metatranscriptome	114	Y
F088337	Metagenome / Metatranscriptome	109	N
F089618	Metagenome / Metatranscriptome	108	N
F092496	Metagenome / Metatranscriptome	107	Y
F093040	Metagenome / Metatranscriptome	106	N
F093894	Metagenome / Metatranscriptome	106	N
F098663	Metagenome / Metatranscriptome	103	Y
F100490	Metagenome / Metatranscriptome	102	N
F104202	Metagenome / Metatranscriptome	100	N

Family

Scaffold	Taxonomy	Length	IMG/M Link
Ga0005490J37275_100141	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Ecdysozoa → Panarthropoda → Arthropoda → Mandibulata → Pancrustacea → Hexapoda → Insecta → Dicondylia → Pterygota → Neoptera → Endopterygota → Diptera → Nematocera → Culicomorpha → Culicoidea → Culicidae → Culicinae → Culicini → Culex → Culex → Culex pipiens complex → Culex quinquefasciatus	602	Open in IMG/M
Ga0005490J37275_100212	Not Available	578	Open in IMG/M
Ga0005490J37275_100230	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. Tv2a-2	738	Open in IMG/M
Ga0005490J37275_100287	Not Available	504	Open in IMG/M
Ga0005490J37275_100298	Not Available	766	Open in IMG/M
Ga0005490J37275_100304	Not Available	865	Open in IMG/M
Ga0005490J37275_100435	Not Available	963	Open in IMG/M
Ga0005490J37275_100541	Not Available	506	Open in IMG/M
Ga0005490J37275_100687	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Opitutae → Opitutales → Opitutaceae → Lacunisphaera → Lacunisphaera limnophila	825	Open in IMG/M
Ga0005490J37275_100867	Not Available	944	Open in IMG/M
Ga0005490J37275_100977	Not Available	625	Open in IMG/M
Ga0005490J37275_101421	Not Available	809	Open in IMG/M
Ga0005490J37275_101953	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Basidiomycota → Agaricomycotina → Agaricomycetes → Agaricomycetes incertae sedis → Polyporales → Fibroporiaceae → Fibroporia → Fibroporia radiculosa	1816	Open in IMG/M
Ga0005490J37275_102372	Not Available	847	Open in IMG/M
Ga0005490J37275_102390	Not Available	584	Open in IMG/M
Ga0005490J37275_102440	Not Available	528	Open in IMG/M
Ga0005490J37275_102477	Not Available	847	Open in IMG/M
Ga0005490J37275_102564	Not Available	948	Open in IMG/M
Ga0005490J37275_103307	Not Available	510	Open in IMG/M
Ga0005490J37275_103766	Not Available	952	Open in IMG/M
Ga0005490J37275_104149	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Bacteroidaceae → Bacteroides → Bacteroides fragilis	540	Open in IMG/M
Ga0005490J37275_104746	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → eudicotyledons → Gunneridae → Pentapetalae → rosids → fabids → Malpighiales → Rhizophoraceae → Rhizophora → Rhizophora mucronata	2269	Open in IMG/M
Ga0005490J37275_105256	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales	1314	Open in IMG/M
Ga0005490J37275_105853	Not Available	762	Open in IMG/M
Ga0005490J37275_106623	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	569	Open in IMG/M
Ga0005490J37275_106737	Not Available	806	Open in IMG/M
Ga0005490J37275_107052	Not Available	549	Open in IMG/M
Ga0005490J37275_107820	Not Available	805	Open in IMG/M
Ga0005490J37275_107974	Not Available	556	Open in IMG/M
Ga0005490J37275_109153	Not Available	592	Open in IMG/M
Ga0005490J37275_109840	Not Available	577	Open in IMG/M
Ga0005490J37275_116765	All Organisms → cellular organisms → Bacteria → Proteobacteria → unclassified Proteobacteria → Proteobacteria bacterium	559	Open in IMG/M

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0005490J37275_100141	Ga0005490J37275_1001411	F033440	FQVTQAAIRSPAGMRGQSIACSVVEAHILLLPVTVFFVTGYGSALQNSLAYHLLEANASKRPFARPQRLFSFENHRGEVNAPTYLFGEILSFSSGPFDFVPQSSAALVTQLGMIIAQSPLPSRKPRTLKRPSNFRSPSGLSSLLDRSARSAARSEKLTFVCSPITFYSPNALISLKLSALGSPLQVRYRPPGLLLSEP
Ga0005490J37275_100212	Ga0005490J37275_1002121	F001418	ESSGEAEFTGSSDGGRTSSNANEESGGEERLETVPSQVK*
Ga0005490J37275_100230	Ga0005490J37275_1002301	F089618	VVQPVLRPSATPAANLQLSLPLPPLAAPVSNIRLASAALPPARPRANPPARIGVFSPGSTGGKHPACTVCYALPIDWLLTFQLALASGLQLGLRLLPTHIWCRPSARQVLRLPVLTGFRRNLRLAPAAAAAPTRAGGCPLLPHRPRTSDSHRLLFCRLCRSRLTQLALRALTSGWAFDAPLASTEPCIAG*
Ga0005490J37275_100287	Ga0005490J37275_1002871	F100490	FSIGQFARLLRSLELRAVFQSTVLLLRDQKLLFRMRKCFEGSTRHLPTE*
Ga0005490J37275_100298	Ga0005490J37275_1002981	F071421	LPPLSFLRDGPPQFHSGLTATMICDMRLSGGGNLSPITPKSGYRFGPTSRNLARVVAIDQPPTDPIAACWENQQDFS*
Ga0005490J37275_100304	Ga0005490J37275_1003041	F030305	VPFGFLVPVPSFLFPALSDLARRCSSGRPVPRVSDRTGDEAPSCPGSSVFSAVPADGSSSRPDSRILQLGSPQIARLPRLSTSCLAVDERPGCPVRSIIWLYRRRRFRVAPNLTSFGGTVSNSPSRPGSSLLQPLPLMVLRVAPGAPSSGFAGGDSSGCPEALIPRLCRLVAFRVSPDLPPSDICRFRFSGLPQIGFLGGSMMNPRFARTLHPRSIQLTSLQVAPKFPLPAAPRMNLQTHSGLAFLPTLRCSLNLYPLFACRRTGLLRTTINQFRIACRAGLQSVSLQ
Ga0005490J37275_100435	Ga0005490J37275_1004351	F003383	MRLRVAPLPASSRPVWVAFPGCPFRAPFLLSRRPNPQVAPWLRSFGCAGDGRSSCPELRMPSAVPVSARFRVAPLPAFSCSAPDVGLGFPLVLHLRLYRRWITELPRCAHLSAVPSCQSSSYPEHQPFGIADDSSSELPRTSNPPAPIDGYPSYPGSHTYRFALF*
Ga0005490J37275_100541	Ga0005490J37275_1005411	F020912	QHDARDSGGLGDKAGPKKDAERRHKMSTRNGKETQPGQGM*
Ga0005490J37275_100687	Ga0005490J37275_1006871	F067295	RTVEARRSENPAESTTGIIPGDRGKEGGSWCRPPLLGGNPRKGKITSSSGRCHDRSSNMIQELRGEARTRNRCRAESGSRGVSTRRPDAVTQRVQGCYCADQNAKVNPGGRRKPIPPPEGPGRPKAARARKGDADVGSERDRQIP*
Ga0005490J37275_100817	Ga0005490J37275_1008171	F016923	FQVTRRSARSPAGMHGQNLASGDGVT*ALCSPLPILFSLGSMLRCASAFFRPGRSSLLDTAFCSPAATADLSIRLRSRVNAPDLYLQNGSKICARPVRLRTPAPVLAFLSPSGARSLHVARCQVRNQNSPSVLKLPLPSGTSRSLGLVALNLIPNREAYPCESPDLPSLPAAPEIISYSPALRIIVPDPLLPARLAVLRTS
Ga0005490J37275_100867	Ga0005490J37275_1008672	F067296	AVSSGYRLANLRFAPAINPSASPSNRPPTRVGCLSPALPSNLNLEPFIDCQILQQVFRSISSLRLQLTFRPNLPAALRLPSPASLPVPPSSRPATVAACRSSSHALQSSSSLRLLSIFRLNLPVSLFDLRHVVDLPALPTNPTSDSRCSHPQALPSS
Ga0005490J37275_100977	Ga0005490J37275_1009771	F104202	SK*PSGSSTFPGQHAQPELGSLAGRDPNPSTLSKRVFIPLEMHGVTTACVRRDPAILPSQSLTLGCGLSLACNDCAPCGCLRGRVTVPGLPLCIFPGLPQCPFGSNAPRTGILSDFATDLHPRTRYTSLHSGLPHRLTVLSPLRDFAGFPSRLIPWAQRARPLNHTGNSPWYSARSSFPPQRLFCCGCHWIIVRDPLLFTRLAVPSNL
Ga0005490J37275_101025	Ga0005490J37275_1010252	F034200	VAPGQRTAKAVADPALNGKDADTKLQTCVYLVRKPATAIASRSELRGLTQFSDRKAL
Ga0005490J37275_101421	Ga0005490J37275_1014211	F023505	NLDDGSGRKKVDGIPEIIPGDWGKVESGWLAQPLEARFARNGNRRHNSPVPLMAFARRQ*
Ga0005490J37275_101953	Ga0005490J37275_1019533	F098663	MLLLQVLHGCRQSVLEVRLTPLTDEIPVVNLYLTINGADRVSFGAKTSRYGPYELGYRRATKIFTKCKTVPLNLIWLFA*
Ga0005490J37275_101962	Ga0005490J37275_1019622	F032287	VGPRSNPQDTERPAERQAARFEQEKIWRGTAMSKGCAETVGDTSDDNPDPESPWKRRGQAARKGGRE
Ga0005490J37275_102247	Ga0005490J37275_1022471	F070926	FQVTLTVRSPAGMHGRSMACVRTVVTFSSAPRIGFPTQISAREMTRCFSARSSDLGTAFRSPAATVLFREPPRQD*RSXPIPSIRLRTLPQARSVWSFPPRPLLADGVGSALPTRCPIPDPQLPDVHRFPLPFRTFQSFGLKALYRRQSLGKLTLADSPIFLRSPTAPIITNRTRCRIIVPDPLPSARLTALG
Ga0005490J37275_102372	Ga0005490J37275_1023721	F024939	PELHGPRTLRFAPFVDCSSLDTWCLPLPVDCSTFRFVHPVLFTDLTRRSTLDALRRSQISPLPTSCVRVVHRIAPCSTLRALHRSRITPLSMPLRRASCGLLRSLRFAPRCRSGNDRHRSLCSDRSLFGCLMLRDGLRIAPHADTSHPYVDHGFLRVRHFKLRSVHRLLCARRLALASECGLLRSPPLAPSCCPRITPCATLGVLHLTRLAPR*
Ga0005490J37275_102390	Ga0005490J37275_1023901	F061605	GSKPSFTAKLPAGMHGTELCSQIRRAFFLSAPRFLLSKAADRCFQARLRASLTGADISKRPFALPKRLPVSEPPFRGQRSRPTPSMPCRSLAKPVRLSAPPRAPVRPGTREITAKNPLPDSRSALPTVSRISTPLQGLSNPSGSKRSIRFPIWKLTFRIAPDCPSLPGFGSILVPIPDHRSRLAKRPVACCS
Ga0005490J37275_102440	Ga0005490J37275_1024401	F064734	STALKSAGRFASLLPYGWFGQPRDQCFKARRSLSSLKWDRSLVTAFPSPATAAPFRAIIPGSMVLACYFALSPQASLPVRPFCSATGTGSPRSRPLLRFWPVTARLAASTCRYSGLHSPSGLLPPSGSKRSAGFAAGRSAFRIRPIPSRSPLPVLFQLRLRIIVPGSLRFRRLAV
Ga0005490J37275_102477	Ga0005490J37275_1024771	F093040	MLTTAMRLAEAEGVKHALGVHHPKTGTDRKGPGLPTNPDLSPVTRDYPRRSRVDGHPLARLPLHSTF
Ga0005490J37275_102477	Ga0005490J37275_1024773	F006591	GARHTLFPMRRSLGAPPSQVGGRLLDASSRGNAEFSVSWQDRRPDCSKRLLGEAFQHDSQIPCRGTAPYKVMRPLRHGLVTAVLEVGPRELPPERWPKGTGLASYPSIDI*
Ga0005490J37275_102564	Ga0005490J37275_1025641	F045561	RLGRPPERGLEPDFRKEDGGSGQKARAGRQPESRQAHPGNGETPGTSRGGFFAVKAEGGGDVKAFPRCTGRVPGGAEAHEGSGSVEA*
Ga0005490J37275_102564	Ga0005490J37275_1025642	F011643	LRPTAGGHDEAGETRYGSAARDKPLKGKPWTWQRDETSPRRQVAEQTVEDVRNVEDGT*
Ga0005490J37275_102606	Ga0005490J37275_1026061	F021919	VPSDPVSQLNSPPACTAQSFAARIAGRSPFSSPPASFDASGSTLPGSPAGFPGWSRLEATFCSPETTARLQATISRSTLPICYFDALPFVRCTRSALDSPTRSGLPRYARDQRQKPVMQLASSTSNRSSDLHSLSGSFEPFRIKAFNPIPGRKAHLPNTPDCPSLPGTGSILVPIPDHRS*RAKCPVACCSSD
Ga0005490J37275_102933	Ga0005490J37275_1029331	F048323	YFDSLTGITESESGKSSEALKITGRPELHEKMKIRKNMKKEC*
Ga0005490J37275_103307	Ga0005490J37275_1033071	F060503	SKGFTSTTVAHRRYTRPEPRQSGRWDNICFAPRTPLSSRVRIGVPQPICSPFPIGTDISKRPFARSQREPASRPPFRGQCSRPTCSISTGPSPNPFQSDVPDRLSGLHSPSGVFMPLRIVAFSRSSAPEAHLLKLPDTPSLPAAITHKCVGRGSTFQVRYFPPGSLLP*
Ga0005490J37275_103473	Ga0005490J37275_1034731	F019794	LDESVVQPVLRPPATPETSLQLALPLPPLAAPASNLRLASAALRPARPGANPPARIGVLSFGSTGGKRRAFAVCIALPFVRWLTFQLALASFLRLGRRPTADSHLVLILQLGSCPTSGSHRLLLQPSACASCCYDSPACAGCRPFAIPAANFRLASAVTPSSFTGFDSPDLRRMFLPPAGPLVHPLLQPNLASPAEPSMSIQSPPVLAPSGSASFNN
Ga0005490J37275_103766	Ga0005490J37275_1037662	F088337	DGLVACRIMHRPIRPLDEDSSCLASCIFRLGQQCASGLPRTTHSLTAPATKFRVAPILQSIRLCRRQIFELPRISRPSAVPVMKPRVAPILRCSGITFDESPSCPEHCIFRLYRRWIFELPRISHPSALLVVESPSFPGLPPSCLASDKFSGLPRFPHLPAPAGCSPSFLGLHPPVSPAVNFQVAPNLLSSG*
Ga0005490J37275_104149	Ga0005490J37275_1041491	F068321	HRVSLYRMLTSVSERLHSIHWFRTDSFGNLLPTWARLGPLSVNEQGAALSHRRFDRGSFRCDRAPNGVAWRFPDWTAVGFAFPSPFLGSRSFWISVTRILATCWARFDHDRGSLSPRLVEPLAAILTRIASGVFVADDFRVALSLAADSRRARYALLRTDLAWKVGLRIRSLFLFRRSLP
Ga0005490J37275_104746	Ga0005490J37275_1047461	F002654	MLNNQTFNDKVVCLKGNSPEQVFKVPKLLLSENKEVFKPYNQEIGLEAAIF*
Ga0005490J37275_105256	Ga0005490J37275_1052563	F077566	VGRLSRVAWLYIGIVVAAAVVMIAVGPFGGLDWVQVGALGLLLVACESS
Ga0005490J37275_105853	Ga0005490J37275_1058531	F080954	RSDLERTFPATQEDEDSIEAGDSLHGASRGIEDSREIGTPVPGATGDAKFSGMWSFVAG*
Ga0005490J37275_106623	Ga0005490J37275_1066232	F064997	MGGIAPANQPRLSFTGSEDGEAETETGRAAKPLGERRIESHGPSGLNLLNRRMRTRLY
Ga0005490J37275_106737	Ga0005490J37275_1067372	F093894	VLVTELSVTNAGIQGQPRSNPCIALGASVEQGVIPDRGKVQKVGTGNS
Ga0005490J37275_107052	Ga0005490J37275_1070521	F004375	MIGHKNVTTNRLWLRDDLDDALDRLDETLKLTEFFDSTPNGSAIEQYLKGDRSSKRHEPDLGFFYDHASQKADYLAIWAGTEKYPTVIRHTVANVTPDEAKTIDELTASASRCSPAQFGWAVAEMEIARHAVSAE*
Ga0005490J37275_107820	Ga0005490J37275_1078201	F023505	LEDGGGRKKAAGIQEIIPGDWAKVEPGWLAQPLEDRFARNGNRRHNSPVPLTAFARRQ*
Ga0005490J37275_107820	Ga0005490J37275_1078202	F080063	VALGQRTAKSGGRPSAKGEEAETQSQTCLHPVRESASANAGSSEPRGLALRFSRRKALNGPAMRPQLRLPWRMASGSWQPREGAPNVSAGKREWRTPNP
Ga0005490J37275_107974	Ga0005490J37275_1079742	F092496	MSTVTAVIVMTSVVEELKETETYPAIEFINRRAREFASSGEFVEVSRWARGKHPESLIFIAGLNFCDLGLLRTVLESAPWRSPDLVQILTRAGEAKRFELCAWPKIVGRS
Ga0005490J37275_109153	Ga0005490J37275_1091532	F018933	SRVAGLSLCFSRRSRIAPCSTLDSLFLPRIAPRSVLIDLCCSPICTGAQHLEPLPRLRIAPSSTLSVPSRSQIAPRSALPAPCRSWIAPRSTIDTQCRSTDISVRLHFAPCAVHGLLRAQHFRLRPAH*
Ga0005490J37275_109840	Ga0005490J37275_1098401	F068528	MRTIDFCFPLPDYEYPRLVSYRHLFEACASPVADGLAPATRRPVDLAFHDAESASVGCPGFTRNVLVCALPIEPYR
Ga0005490J37275_116765	Ga0005490J37275_1167651	F001441	RWPGAENCMNLSLTDAFGRFGAKPSSRLHGRSAIAADGAMVLNCLSVHFGHPTRGVLRYEDRLSREPAGSKDVGLLGQHLALARDGALPIRMIVTAKAGEKTSSSCHVRPDLIGKIVTFDGDHFVIDFTRLEEPRQAVPAGRRK*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

3300002672: Forest soil microbial communities from Harvard Forest Long Term Ecological Research site in Petersham, Massachusetts, USA - MetaT HF139 (Metagenome Metatranscriptome, Counting Only)

Overview

Ecosystem and Geography

Associated Families

Associated Scaffolds

Sequences