Metagenome / Metatranscriptome Family F064997

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F064997
Family Type	Metagenome / Metatranscriptome
Number of Sequences	128
Average Sequence Length	62 residues
Representative Sequence	MGGTAPANQLRLSFTGSEDGEAETETCRAAKPLWRTTTRTSGPQGLNLLNRRMRTRLYGGVGG
Number of Associated Samples	117
Number of Associated Scaffolds	128

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	73.87 %
% of genes near scaffold ends (potentially truncated)	71.88 %
% of genes from short scaffolds (< 2000 bps)	75.78 %
Associated GOLD sequencing projects	114
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.18

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (75.781 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil (13.281 % of family members)
Environment Ontology (ENVO)	Unclassified (24.219 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (66.406 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 14.29% β-sheet: 0.00% Coil/Unstructured: 85.71%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.18
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.18
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 128 Family Scaffolds
PF14559	TPR_19	3.12
PF00078	RVT_1	1.56
PF13414	TPR_11	1.56
PF04545	Sigma70_r4	1.56
PF13185	GAF_2	0.78
PF02702	KdpD	0.78
PF01259	SAICAR_synt	0.78
PF04519	Bactofilin	0.78
PF01245	Ribosomal_L19	0.78
PF12681	Glyoxalase_2	0.78
PF13484	Fer4_16	0.78
PF01381	HTH_3	0.78
PF12679	ABC2_membrane_2	0.78
PF01850	PIN	0.78
PF10396	TrmE_N	0.78
PF01435	Peptidase_M48	0.78
PF02371	Transposase_20	0.78
PF07238	PilZ	0.78
PF14870	PSII_BNR	0.78
PF13180	PDZ_2	0.78
PF08281	Sigma70_r4_2	0.78
PF03551	PadR	0.78

COG ID	Name	Functional Category	% Frequency in 128 Family Scaffolds
COG0152	Phosphoribosylaminoimidazole-succinocarboxamide synthase	Nucleotide transport and metabolism [F]	0.78
COG0335	Ribosomal protein L19	Translation, ribosomal structure and biogenesis [J]	0.78
COG1664	Cytoskeletal protein CcmA, bactofilin family	Cytoskeleton [Z]	0.78
COG1695	DNA-binding transcriptional regulator, PadR family	Transcription [K]	0.78
COG1733	DNA-binding transcriptional regulator, HxlR family	Transcription [K]	0.78
COG1846	DNA-binding transcriptional regulator, MarR family	Transcription [K]	0.78
COG2205	K+-sensing histidine kinase KdpD	Signal transduction mechanisms [T]	0.78
COG3547	Transposase	Mobilome: prophages, transposons [X]	0.78

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	75.78 %
Unclassified	root	N/A	24.22 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	75.78 %
Unclassified	root	N/A	24.22 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	75.78 %
Unclassified	root	N/A	24.22 %

Name	Rank	Taxonomy	Distribution
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	34.38 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	32.03 %
Unclassified	root	N/A	24.22 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	24.22 %
unclassified Acidobacteria	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria	22.66 %
Gammaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	14.84 %
Betaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	13.28 %
Acidobacteriia	class	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia	3.91 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	3.91 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	24.22 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	22.66 %
Chromatiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Chromatiales	14.84 %
Burkholderiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	13.28 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	3.91 %
Acidobacteriales	order	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales	3.12 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	24.22 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	22.66 %
Chromatiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Chromatiales → Chromatiaceae	14.84 %
Burkholderiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiaceae	13.28 %
Bradyrhizobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	3.91 %
Acidobacteriaceae	family	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	3.12 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	24.22 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	22.66 %
Nitrosococcus	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Chromatiales → Chromatiaceae → Nitrosococcus	14.84 %
Paraburkholderia	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiaceae → Paraburkholderia	13.28 %
Bradyrhizobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	3.91 %
Acidipila	genus	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Acidipila	0.78 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	24.22 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	22.66 %
Nitrosococcus halophilus	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Chromatiales → Chromatiaceae → Nitrosococcus → Nitrosococcus halophilus	14.84 %
unclassified Paraburkholderia	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiaceae → Paraburkholderia → unclassified Paraburkholderia	1.56 %
Bradyrhizobium huanghuaihaiense	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium huanghuaihaiense	0.78 %
unclassified Acidipila	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Acidipila → unclassified Acidipila	0.78 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	24.22 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	22.66 %
Nitrosococcus halophilus Nc 4	strain	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Chromatiales → Chromatiaceae → Nitrosococcus → Nitrosococcus halophilus → Nitrosococcus halophilus Nc 4	14.84 %
Paraburkholderia sp. BL23I1N1	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiaceae → Paraburkholderia → unclassified Paraburkholderia → Paraburkholderia sp. BL23I1N1	1.56 %
Acidipila sp.	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Acidipila → unclassified Acidipila → Acidipila sp.	0.78 %
Bradyrhizobium huanghuaihaiense	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium huanghuaihaiense	0.78 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300001170\|JGI12704J13340_1014954	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	615	Open in IMG/M
3300001182\|JGI12668J13544_1007344	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiaceae → Paraburkholderia	596	Open in IMG/M
3300001593\|JGI12635J15846_10000446	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia	35229	Open in IMG/M
3300001593\|JGI12635J15846_10546616	Not Available	678	Open in IMG/M
3300002245\|JGIcombinedJ26739_100068582	All Organisms → cellular organisms → Bacteria	3267	Open in IMG/M
3300002245\|JGIcombinedJ26739_100720333	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Chromatiales → Chromatiaceae → Nitrosococcus → Nitrosococcus halophilus → Nitrosococcus halophilus Nc 4	876	Open in IMG/M
3300002245\|JGIcombinedJ26739_101246216	Not Available	634	Open in IMG/M
3300002672\|Ga0005490J37275_106623	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	569	Open in IMG/M
3300002681\|Ga0005471J37259_106409	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiaceae → Paraburkholderia	545	Open in IMG/M
3300002914\|JGI25617J43924_10009435	All Organisms → cellular organisms → Bacteria	3144	Open in IMG/M
3300002917\|JGI25616J43925_10143014	All Organisms → cellular organisms → Bacteria	960	Open in IMG/M
3300002917\|JGI25616J43925_10364667	Not Available	534	Open in IMG/M
3300003219\|JGI26341J46601_10168226	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	606	Open in IMG/M
3300004102\|Ga0058888_1467018	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	764	Open in IMG/M
3300004120\|Ga0058901_1004688	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Chromatiales → Chromatiaceae → Nitrosococcus → Nitrosococcus halophilus → Nitrosococcus halophilus Nc 4	579	Open in IMG/M
3300004139\|Ga0058897_10057071	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiaceae → Paraburkholderia	604	Open in IMG/M
3300004611\|Ga0068925_1378081	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Acidipila → unclassified Acidipila → Acidipila sp.	1039	Open in IMG/M
3300005146\|Ga0066817_1031360	Not Available	532	Open in IMG/M
3300005175\|Ga0066673_10767363	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	552	Open in IMG/M
3300005178\|Ga0066688_10009694	All Organisms → cellular organisms → Bacteria	4672	Open in IMG/M
3300005434\|Ga0070709_10098652	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1942	Open in IMG/M
3300005434\|Ga0070709_10151633	All Organisms → cellular organisms → Bacteria	1602	Open in IMG/M
3300005536\|Ga0070697_100005845	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	9492	Open in IMG/M
3300005554\|Ga0066661_10708767	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	590	Open in IMG/M
3300005555\|Ga0066692_10103380	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1692	Open in IMG/M
3300005556\|Ga0066707_10579804	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiaceae → Paraburkholderia	719	Open in IMG/M
3300005561\|Ga0066699_10558542	All Organisms → cellular organisms → Bacteria	821	Open in IMG/M
3300005568\|Ga0066703_10912652	Not Available	501	Open in IMG/M
3300005586\|Ga0066691_10770690	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	568	Open in IMG/M
3300005591\|Ga0070761_10327178	All Organisms → cellular organisms → Bacteria	925	Open in IMG/M
3300005712\|Ga0070764_10096843	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1572	Open in IMG/M
3300006028\|Ga0070717_12004065	Not Available	522	Open in IMG/M
3300006174\|Ga0075014_100677095	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	598	Open in IMG/M
3300006176\|Ga0070765_100136570	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	2171	Open in IMG/M
3300006755\|Ga0079222_11396028	All Organisms → cellular organisms → Bacteria → Acidobacteria	648	Open in IMG/M
3300006797\|Ga0066659_10673154	All Organisms → cellular organisms → Bacteria	844	Open in IMG/M
3300006800\|Ga0066660_10462747	All Organisms → cellular organisms → Bacteria	1062	Open in IMG/M
3300006804\|Ga0079221_10972961	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	633	Open in IMG/M
3300006893\|Ga0073928_10925915	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	596	Open in IMG/M
3300007265\|Ga0099794_10337629	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiaceae → Paraburkholderia	783	Open in IMG/M
3300009088\|Ga0099830_11443504	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Chromatiales → Chromatiaceae → Nitrosococcus → Nitrosococcus halophilus → Nitrosococcus halophilus Nc 4	573	Open in IMG/M
3300009174\|Ga0105241_11730052	Not Available	608	Open in IMG/M
3300010103\|Ga0127500_1088506	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium huanghuaihaiense	607	Open in IMG/M
3300010106\|Ga0127472_1043796	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiaceae → Paraburkholderia → unclassified Paraburkholderia → Paraburkholderia sp. BL23I1N1	646	Open in IMG/M
3300010109\|Ga0127497_1073683	Not Available	557	Open in IMG/M
3300010115\|Ga0127495_1010114	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiaceae → Paraburkholderia	681	Open in IMG/M
3300010120\|Ga0127451_1066823	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Chromatiales → Chromatiaceae → Nitrosococcus → Nitrosococcus halophilus → Nitrosococcus halophilus Nc 4	531	Open in IMG/M
3300010132\|Ga0127455_1064269	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	763	Open in IMG/M
3300010140\|Ga0127456_1128393	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	633	Open in IMG/M
3300010141\|Ga0127499_1131650	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiaceae → Paraburkholderia	541	Open in IMG/M
3300010303\|Ga0134082_10199710	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiaceae → Paraburkholderia	818	Open in IMG/M
3300010321\|Ga0134067_10455683	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	522	Open in IMG/M
3300010859\|Ga0126352_1089658	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiaceae → Paraburkholderia	717	Open in IMG/M
3300010859\|Ga0126352_1092115	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Chromatiales → Chromatiaceae → Nitrosococcus → Nitrosococcus halophilus → Nitrosococcus halophilus Nc 4	587	Open in IMG/M
3300010862\|Ga0126348_1241199	All Organisms → cellular organisms → Bacteria	1159	Open in IMG/M
3300010869\|Ga0126359_1379639	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Chromatiales → Chromatiaceae → Nitrosococcus → Nitrosococcus halophilus → Nitrosococcus halophilus Nc 4	616	Open in IMG/M
3300011053\|Ga0138531_170338	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Chromatiales → Chromatiaceae → Nitrosococcus → Nitrosococcus halophilus → Nitrosococcus halophilus Nc 4	564	Open in IMG/M
3300011062\|Ga0138582_1073289	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Chromatiales → Chromatiaceae → Nitrosococcus → Nitrosococcus halophilus → Nitrosococcus halophilus Nc 4	570	Open in IMG/M
3300011120\|Ga0150983_12269779	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	540	Open in IMG/M
3300011120\|Ga0150983_16050127	All Organisms → cellular organisms → Bacteria → Acidobacteria	1315	Open in IMG/M
3300011305\|Ga0138532_1047907	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	558	Open in IMG/M
3300012203\|Ga0137399_10154714	All Organisms → cellular organisms → Bacteria → Acidobacteria	1834	Open in IMG/M
3300012205\|Ga0137362_10053935	All Organisms → cellular organisms → Bacteria → Acidobacteria	3287	Open in IMG/M
3300012207\|Ga0137381_10151162	Not Available	1997	Open in IMG/M
3300012357\|Ga0137384_10301172	Not Available	1333	Open in IMG/M
3300012362\|Ga0137361_10038170	All Organisms → cellular organisms → Bacteria → Acidobacteria	3873	Open in IMG/M
3300012372\|Ga0134037_1213418	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	650	Open in IMG/M
3300012393\|Ga0134052_1201251	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Chromatiales → Chromatiaceae → Nitrosococcus → Nitrosococcus halophilus → Nitrosococcus halophilus Nc 4	643	Open in IMG/M
3300012398\|Ga0134051_1277486	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	675	Open in IMG/M
3300012406\|Ga0134053_1433379	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiaceae → Paraburkholderia	627	Open in IMG/M
3300012918\|Ga0137396_11216197	Not Available	530	Open in IMG/M
3300012925\|Ga0137419_10186855	All Organisms → cellular organisms → Bacteria → Acidobacteria	1525	Open in IMG/M
3300014165\|Ga0181523_10642017	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	582	Open in IMG/M
3300015054\|Ga0137420_1087138	All Organisms → cellular organisms → Bacteria → Acidobacteria	2554	Open in IMG/M
3300015054\|Ga0137420_1396358	All Organisms → cellular organisms → Bacteria → Acidobacteria	1139	Open in IMG/M
3300017932\|Ga0187814_10271668	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	645	Open in IMG/M
3300019230\|Ga0181501_1009861	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Chromatiales → Chromatiaceae → Nitrosococcus → Nitrosococcus halophilus → Nitrosococcus halophilus Nc 4	593	Open in IMG/M
3300019242\|Ga0181502_1093235	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Chromatiales → Chromatiaceae → Nitrosococcus → Nitrosococcus halophilus → Nitrosococcus halophilus Nc 4	657	Open in IMG/M
3300019256\|Ga0181508_1441573	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Chromatiales → Chromatiaceae → Nitrosococcus → Nitrosococcus halophilus → Nitrosococcus halophilus Nc 4	570	Open in IMG/M
3300019788\|Ga0182028_1325521	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1430	Open in IMG/M
3300019887\|Ga0193729_1013324	All Organisms → cellular organisms → Bacteria	3671	Open in IMG/M
3300020581\|Ga0210399_10039063	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	3800	Open in IMG/M
3300021086\|Ga0179596_10393644	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Chromatiales → Chromatiaceae → Nitrosococcus → Nitrosococcus halophilus → Nitrosococcus halophilus Nc 4	698	Open in IMG/M
3300021178\|Ga0210408_10984241	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	653	Open in IMG/M
3300021855\|Ga0213854_1331818	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	601	Open in IMG/M
3300021857\|Ga0213849_1084271	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	569	Open in IMG/M
3300021861\|Ga0213853_10862097	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	620	Open in IMG/M
3300022513\|Ga0242667_1043109	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiaceae → Paraburkholderia	554	Open in IMG/M
3300022522\|Ga0242659_1114233	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Chromatiales → Chromatiaceae → Nitrosococcus → Nitrosococcus halophilus → Nitrosococcus halophilus Nc 4	546	Open in IMG/M
3300022527\|Ga0242664_1068419	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiaceae → Paraburkholderia	681	Open in IMG/M
3300022529\|Ga0242668_1111909	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	566	Open in IMG/M
3300022531\|Ga0242660_1183931	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiaceae → Paraburkholderia	566	Open in IMG/M
3300022533\|Ga0242662_10259587	Not Available	567	Open in IMG/M
3300022709\|Ga0222756_1050949	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Chromatiales → Chromatiaceae → Nitrosococcus → Nitrosococcus halophilus → Nitrosococcus halophilus Nc 4	620	Open in IMG/M
3300022716\|Ga0242673_1098512	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiaceae → Paraburkholderia → unclassified Paraburkholderia → Paraburkholderia sp. BL23I1N1	562	Open in IMG/M
3300022720\|Ga0242672_1107294	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	555	Open in IMG/M
3300024330\|Ga0137417_1398879	All Organisms → cellular organisms → Bacteria → Acidobacteria	3580	Open in IMG/M
3300025878\|Ga0209584_10415643	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	519	Open in IMG/M
3300026358\|Ga0257166_1045685	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiaceae → Paraburkholderia	619	Open in IMG/M
3300026481\|Ga0257155_1066112	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiaceae → Paraburkholderia	578	Open in IMG/M
3300026557\|Ga0179587_10004214	All Organisms → cellular organisms → Bacteria → Acidobacteria	7054	Open in IMG/M
3300027562\|Ga0209735_1012298	All Organisms → cellular organisms → Bacteria	1674	Open in IMG/M
3300027894\|Ga0209068_10862009	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Chromatiales → Chromatiaceae → Nitrosococcus → Nitrosococcus halophilus → Nitrosococcus halophilus Nc 4	535	Open in IMG/M
3300027908\|Ga0209006_10154249	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	2015	Open in IMG/M
3300030718\|Ga0307919_1042443	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Chromatiales → Chromatiaceae → Nitrosococcus → Nitrosococcus halophilus → Nitrosococcus halophilus Nc 4	626	Open in IMG/M
3300030776\|Ga0075396_1930591	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Chromatiales → Chromatiaceae → Nitrosococcus → Nitrosococcus halophilus → Nitrosococcus halophilus Nc 4	729	Open in IMG/M
3300030873\|Ga0265751_111954	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	570	Open in IMG/M
3300030889\|Ga0265761_109490	Not Available	558	Open in IMG/M
3300030962\|Ga0138297_1786858	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	783	Open in IMG/M
3300030975\|Ga0099845_1005552	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Chromatiales → Chromatiaceae → Nitrosococcus → Nitrosococcus halophilus → Nitrosococcus halophilus Nc 4	764	Open in IMG/M
3300032828\|Ga0335080_11548006	Not Available	654	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	98.44%
Host-Associated	Host-Associated	1.56%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	89.06%
Aquatic	Environmental → Aquatic	9.38%
Plants	Host-Associated → Plants	1.56%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	89.06%
Freshwater	Environmental → Aquatic → Freshwater	7.03%
Sediment	Environmental → Aquatic → Sediment	1.56%
Thermal Springs	Environmental → Aquatic → Thermal Springs	0.78%
Rhizoplane	Host-Associated → Plants → Rhizoplane	0.78%
Rhizosphere	Host-Associated → Plants → Rhizosphere	0.78%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	64.84%
Loam	Environmental → Terrestrial → Soil → Loam	21.88%
Wetlands	Environmental → Aquatic → Freshwater → Wetlands	4.69%
Sediment	Environmental → Aquatic → Freshwater → Sediment	2.34%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	1.56%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	1.56%
Hot (42-90C)	Environmental → Aquatic → Thermal Springs → Hot (42-90C)	0.78%
Clay	Environmental → Terrestrial → Soil → Clay	0.78%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	0.78%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	0.78%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	35.94%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	16.41%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	13.28%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	13.28%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	4.69%
Bog	Environmental → Aquatic → Freshwater → Wetlands → Bog	3.91%
Unclassified	Environmental → Aquatic → Freshwater → Sediment → Unclassified	2.34%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	1.56%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	1.56%
Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment	0.78%
Acidic	Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Acidic	0.78%
Permafrost	Environmental → Terrestrial → Soil → Unclassified → Permafrost	0.78%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	0.78%
Permafrost	Environmental → Terrestrial → Soil → Wetlands → Permafrost	0.78%
Grasslands	Environmental → Terrestrial → Soil → Loam → Grasslands	0.78%
Unclassified	Environmental → Terrestrial → Soil → Clay → Unclassified	0.78%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	0.78%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	0.78%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	13.28%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil	13.28%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	11.72%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Grasslands Soil	10.94%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	10.16%
Peatlands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Peatlands Soil	4.69%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	4.69%
Boreal Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Boreal Forest Soil	3.91%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil	3.12%
Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Soil	3.12%
Watersheds	Environmental → Aquatic → Freshwater → Sediment → Unclassified → Watersheds	2.34%
Peatland	Environmental → Aquatic → Freshwater → Wetlands → Bog → Peatland	2.34%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	2.34%
Watersheds	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Watersheds	1.56%
Agricultural Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil	1.56%
Bog Forest Soil	Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog Forest Soil	0.78%
Bog	Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog	0.78%
Freshwater Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment → Freshwater Sediment	0.78%
Iron-Sulfur Acid Spring	Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Acidic → Iron-Sulfur Acid Spring	0.78%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	0.78%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	0.78%
Surface Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil	0.78%
Arctic Peat Soil	Environmental → Terrestrial → Soil → Unclassified → Permafrost → Arctic Peat Soil	0.78%
Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil	0.78%
Fen	Environmental → Terrestrial → Soil → Wetlands → Permafrost → Fen	0.78%
Soil	Environmental → Terrestrial → Soil → Loam → Grasslands → Soil	0.78%
Soil	Environmental → Terrestrial → Soil → Clay → Unclassified → Soil	0.78%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	0.78%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere	0.78%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300001170	Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_Ref_O2	Environmental	Open in IMG/M
3300001182	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM1H0_M2	Environmental	Open in IMG/M
3300001593	Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_OM2_M2	Environmental	Open in IMG/M
3300002245	Jack Pine, Ontario site 1_JW_OM2H0_M3 (Jack Pine, Ontario combined, ASSEMBLY_DATE=20131027)	Environmental	Open in IMG/M
3300002672	Forest soil microbial communities from Harvard Forest Long Term Ecological Research site in Petersham, Massachusetts, USA - MetaT HF139 (Metagenome Metatranscriptome, Counting Only)	Environmental	Open in IMG/M
3300002681	Forest soil microbial communities from Harvard Forest Long Term Ecological Research site in Petersham, Massachusetts, USA - MetaT HF120 (Metagenome Metatranscriptome, Counting Only)	Environmental	Open in IMG/M
3300002914	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 9_17_2013_115cm	Environmental	Open in IMG/M
3300002916	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 10_02_2013_1_20cm	Environmental	Open in IMG/M
3300002917	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 9_17_2013_100cm	Environmental	Open in IMG/M
3300003219	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP12_OM3	Environmental	Open in IMG/M
3300004102	Forest soil microbial communities from Harvard Forest Long Term Ecological Research site in Petersham, Massachusetts, USA - MetaT HF212 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300004120	Forest soil microbial communities from Harvard Forest Long Term Ecological Research site in Petersham, Massachusetts, USA - MetaT HF238 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300004139	Forest soil microbial communities from Harvard Forest Long Term Ecological Research site in Petersham, Massachusetts, USA - MetaT HF230 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300004478	Peat soil microbial communities from Weissenstadt, Germany - Metatranscriptome 69 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300004597	Peat soil microbial communities from Weissenstadt, Germany - Metatranscriptome 35 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300004611	Peat soil microbial communities from Weissenstadt, Germany - Metatranscriptome 10 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300005146	Soil and rhizosphere microbial communities from Laval, Canada - mgHAB	Environmental	Open in IMG/M
3300005175	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_122	Environmental	Open in IMG/M
3300005178	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_137	Environmental	Open in IMG/M
3300005434	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-1 metaG	Environmental	Open in IMG/M
3300005436	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG	Environmental	Open in IMG/M
3300005451	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_130	Environmental	Open in IMG/M
3300005536	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-1 metaG	Environmental	Open in IMG/M
3300005537	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen01_05102014_R1	Environmental	Open in IMG/M
3300005554	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_110	Environmental	Open in IMG/M
3300005555	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_141	Environmental	Open in IMG/M
3300005556	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_156	Environmental	Open in IMG/M
3300005559	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_149	Environmental	Open in IMG/M
3300005561	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_148	Environmental	Open in IMG/M
3300005568	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_152	Environmental	Open in IMG/M
3300005586	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_140	Environmental	Open in IMG/M
3300005591	Reference soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire, USA - Hubbard Brook CCASE Soil Metagenome REF1	Environmental	Open in IMG/M
3300005598	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_155	Environmental	Open in IMG/M
3300005712	Warmed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WRM 4	Environmental	Open in IMG/M
3300005843	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2	Host-Associated	Open in IMG/M
3300006028	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-3 metaG	Environmental	Open in IMG/M
3300006174	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Alex Branch Run_MetaG_ABR_2014	Environmental	Open in IMG/M
3300006176	Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 5	Environmental	Open in IMG/M
3300006755	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA Plitter	Environmental	Open in IMG/M
3300006797	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_108	Environmental	Open in IMG/M
3300006800	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_109	Environmental	Open in IMG/M
3300006804	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA AS200	Environmental	Open in IMG/M
3300006893	Iron sulfur acid spring bacterial and archeal communities from Banff, Canada, to study Microbial Dark Matter (Phase II) - Paint Pots PPA 5.5 metaG	Environmental	Open in IMG/M
3300007265	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Rhizosphere_1	Environmental	Open in IMG/M
3300009088	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H3.8 metaG	Environmental	Open in IMG/M
3300009174	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-4 metaG	Host-Associated	Open in IMG/M
3300010103	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_R_Met_40_5_16_2 metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300010106	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_R_Met_20_5_0_1 metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300010109	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_R_Met_40_5_0_2 metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300010115	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_R_Met_40_5_16_1 metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300010120	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_R_Wat_40_2_24_2 metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300010132	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_R_Wat_40_5_16_1 metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300010140	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_R_Wat_40_5_24_1 metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300010141	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_R_Met_40_5_8_2 metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300010303	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_40cm_5_09182015	Environmental	Open in IMG/M
3300010321	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_20cm_5_09212015	Environmental	Open in IMG/M
3300010859	Boreal forest soil eukaryotic communities from Alaska, USA - C5-5 Metatranscriptome (Eukaryote Community Metatranscriptome)	Environmental	Open in IMG/M
3300010862	Boreal forest soil eukaryotic communities from Alaska, USA - C4-4 Metatranscriptome (Eukaryote Community Metatranscriptome)	Environmental	Open in IMG/M
3300010869	Boreal forest soil eukaryotic communities from Alaska, USA - W4-4 Metatranscriptome (Eukaryote Community Metatranscriptome)	Environmental	Open in IMG/M
3300011053	Peat soil microbial communities from Weissenstadt, Germany - Metatranscriptome 9 (Metagenome Metatranscriptome) (version 2)	Environmental	Open in IMG/M
3300011062	Peat soil microbial communities from Weissenstadt, Germany - Metatranscriptome 72 (Metagenome Metatranscriptome) (version 2)	Environmental	Open in IMG/M
3300011120	Combined assembly of Microbial Forest Soil metaT	Environmental	Open in IMG/M
3300011305	Peat soil microbial communities from Weissenstadt, Germany - Metatranscriptome 10 (Metagenome Metatranscriptome) (version 2)	Environmental	Open in IMG/M
3300012203	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czorhiz3.16 metaG	Environmental	Open in IMG/M
3300012205	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_100_16 metaG	Environmental	Open in IMG/M
3300012207	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_115_16 metaG	Environmental	Open in IMG/M
3300012357	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_60_16 metaG	Environmental	Open in IMG/M
3300012362	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_80_16 metaG	Environmental	Open in IMG/M
3300012372	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_R_Glu_20cm_5_0_2 metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300012393	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_R_Glu_40cm_5_0_1 metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300012398	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_R_Glu_40cm_2_24_2 metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300012406	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_R_Glu_40cm_5_4_1 metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300012918	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czcobulk3.16 metaG	Environmental	Open in IMG/M
3300012923	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_40_16 metaG	Environmental	Open in IMG/M
3300012925	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_2_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300014165	Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin05_30_metaG	Environmental	Open in IMG/M
3300015054	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_2_16fungal (PacBio error correction)	Environmental	Open in IMG/M
3300017932	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - ASW-S_4	Environmental	Open in IMG/M
3300019230	Metatranscriptome of peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin01_30_metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300019242	Metatranscriptome of peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin02_10_metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300019256	Metatranscriptome of peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin10_10_metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300019788	Permafrost microbial communities from Stordalen Mire, Sweden - 712E1D metaG (PacBio error correction)	Environmental	Open in IMG/M
3300019887	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? U1c2	Environmental	Open in IMG/M
3300020581	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-14-M	Environmental	Open in IMG/M
3300021086	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug1_1_08_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300021178	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-4-M	Environmental	Open in IMG/M
3300021560	Tropical forest soil microbial communities from Panama - MetaG Plot_4	Environmental	Open in IMG/M
3300021855	Metatranscriptome of freshwater sediment microbial communities from pre-fracked creek in Pennsylvania, United States - G-2016_18 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300021857	Metatranscriptome of freshwater microbial communities from pre-fracked creek in Pennsylvania, United States - WE:C (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300021861	Metatranscriptome of freshwater sediment microbial communities from post-fracked creek in Pennsylvania, United States - ABR_2016 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300022513	Metatranscriptome of lab incubated forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-26-O (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300022522	Metatranscriptome of forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Native-BW-H-11-O (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300022527	Metatranscriptome of forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Native-BW-H-4-O (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300022529	Metatranscriptome of lab incubated forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-32-O (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300022531	Metatranscriptome of forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Native-BW-H-28-M (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300022533	Metatranscriptome of forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Native-BW-C-7-M (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300022709	Metatranscriptome of lab incubated forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-11-O (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300022716	Metatranscriptome of lab incubated forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-12-O (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300022720	Metatranscriptome of lab incubated forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-28-O (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300024232	Soil microbial communities from Purdue University Martell Research Forest, Indiana, United States - CNK05	Environmental	Open in IMG/M
3300024330	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_1_16fungal (PacBio error correction)	Environmental	Open in IMG/M
3300025878	Arctic peat soil microbial communities from the Barrow Environmental Observatory site, Barrow, Alaska, USA - NGEE PermafrostAB12-D (SPAdes)	Environmental	Open in IMG/M
3300025906	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-1 metaG (SPAdes)	Environmental	Open in IMG/M
3300026358	Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - CO-14-B	Environmental	Open in IMG/M
3300026481	Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - NI-19-A	Environmental	Open in IMG/M
3300026557	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug2_1_08_16fungal	Environmental	Open in IMG/M
3300027562	Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_Ref_M2 (SPAdes)	Environmental	Open in IMG/M
3300027894	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Cold Stream Run_MetaG_CSR_2012 (SPAdes)	Environmental	Open in IMG/M
3300027908	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_Ref_O2 (SPAdes)	Environmental	Open in IMG/M
3300030718	Metatranscriptome of soil microbial communities from Risofladan, Vaasa, Finland - OX-1 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300030776	Forest soil microbial communities from France for metatranscriptomics studies - Site 11 - Champenoux / Amance forest - FA10 Emin (Eukaryote Community Metatranscriptome)	Environmental	Open in IMG/M
3300030873	Metatranscriptome of soil microbial communities from Maridalen valley, Oslo, Norway - NSE2 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300030889	Metatranscriptome of rhizosphere microbial communities from Maridalen valley, Oslo, Norway - NZI2 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300030962	Forest soil microbial communities from Spain - ITS-tags Site 9-Mixed-thinned forest site A4_MS_autumn Metatranscriptome (Eukaryote Community Metatranscriptome) (version 2)	Environmental	Open in IMG/M
3300030975	Forest soil eukaryotic communities from Alaska, USA, for a soil warming experiment in a boreal forest - Alaskan Soil AK pilot (Eukaryote Community Metatranscriptome)	Environmental	Open in IMG/M
3300031797	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.169b2f23	Environmental	Open in IMG/M
3300032828	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_3.4	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
JGI12704J13340_10149542	3300001170	Forest Soil	MGGIAPANQPRLSFTGSEDGEAETETGRAAKPLGERRIESHGPSGLNLLNRRMRTRLTVVWEGRAGD
JGI12668J13544_10073442	3300001182	Forest Soil	MSGTAPANQLRLSFTGSEDGEAETETCRAAKPLWRTTTRTSGPQGLNLLNRRMRT
JGI12635J15846_1000044619	3300001593	Forest Soil	MGGIAPANQPRLSFTGSEDGEAETATGRAAKPLWRMTIESHGPSGLNLLNRRMRTRLYGGVGGASG*
JGI12635J15846_105466162	3300001593	Forest Soil	MAPANQPRLSFTGSEDGEAETATCRVAKPLWRTVTRTSGPQGLNLLNRRMRTRLYGGVGG
JGIcombinedJ26739_1000685825	3300002245	Forest Soil	MGGIALANQPRLIFTGSEDGEAETETGRAAKPLGDRRIESHGPSGLNLLNRRMRTRLYGGAGGASG*
JGIcombinedJ26739_1001761192	3300002245	Forest Soil	MGGTAPANQPRLSFTGSEDGEAETATCRVAKPLWRTVTRTSGPQGLNLLNRPMRTRLSGGVGGASRRLLPLSRFGKDLEEAMK*
JGIcombinedJ26739_1007203332	3300002245	Forest Soil	MGGTAPANQLRLSFTGSEDGEAETETCRVAKLLWRTTTRTSGPQGLNLLNRRMRTRXYGGVGGASR*
JGIcombinedJ26739_1012462163	3300002245	Forest Soil	MSGTAPANQLRLSFTGSEDGEAETDLQSGEALVANDDSTSGPQGLNLLNRRMRTRLYGGVGGASR*
Ga0005490J37275_1066232	3300002672	Forest Soil	MGGIAPANQPRLSFTGSEDGEAETETGRAAKPLGERRIESHGPSGLNLLNRRMRTRLY
Ga0005471J37259_1064092	3300002681	Forest Soil	MGGTAPANQLRLSFAGSEDGEAETETCRAAKPLWRTMTRTSGPSGLNLLN
JGI25617J43924_100094352	3300002914	Grasslands Soil	MGGTAPANQLRLSFTGLEDGEAETETRRAAKPLWRTATRNSGPRGLNSLNRRMRTRMYGGVAGASR*
JGI25389J43894_10388543	3300002916	Grasslands Soil	MGGTAPANQLRLSFAGSEDGAAETDLQSGEALVANDDSNLTARGLNSLNRRMRTRMYGGVAGESN
JGI25616J43925_101430141	3300002917	Grasslands Soil	MGGTAPANQPRLSFAGSEDGEAETETCRAAKPLWRTMTRTSGPQGLNL
JGI25616J43925_103646671	3300002917	Grasslands Soil	GGTAPANQLRLSFAGSEDGEAETETCRAAKPLWRTTARTSGPRGLNLLNRRMRIRLYGGVGGASR*
JGI26341J46601_101682262	3300003219	Bog Forest Soil	MGGTAPANQLRLSFTGSEDGEAETATCRAAKPLWRTRTRTTGPQGLNLLNRRMRTRLSVVWE
Ga0058888_14670181	3300004102	Forest Soil	MGGIAPANQPRLSSTGSEDGEAETETGKAAKPLGERRLESHGPSGLNLLNRRMRTRLY
Ga0058901_10046881	3300004120	Forest Soil	MAPANQLRLSFTGSEDGEAETETCRVAKLLWRTTTRTSGPRGLNSLNRRMRTRMYGGVGGED
Ga0058897_100570711	3300004139	Forest Soil	MGGTAPANQPRLSFTGSEDGEAETETCRAAKPLWRTMTRTSGPQGLNLLNRPMRTRMSGGVGGASRRLLPLSRCTP
Ga0068972_10365032	3300004478	Peatlands Soil	MGGTAPANQLRLSFTGSEDGEAETDLQSGEALVANDGLNLTARKLNSLNRRMRTRMYGGVAGE
Ga0068947_12677122	3300004597	Peatlands Soil	MGGTAPANQLRLSFTGSEDGAAETDLQSGEALVANDGLNLTARKLNSLNRRMRTRMYGG
Ga0068925_13780813	3300004611	Peatlands Soil	MGGTAPANQLRLSFTGSEDGEAETETCRAAKPLWRTTTRTSGPQGLNLLNRRMRTR
Ga0066817_10313602	3300005146	Soil	MAPANQPRLSFMGSEDGEAETESCRVAKPRWRTMTRTSGPQGLNLLNRRMRTRMIARSN*
Ga0066673_107673632	3300005175	Soil	MGGMAPVNQLRLSFTGSEDGEAETEPGERRSPCGERRLEPHGLRGLNLLNRRMRTRLYGGVGGAS
Ga0066688_100096941	3300005178	Soil	MGGMAPVNQLRLSFTGSEDGEAETETGERRSPCGERRLEPHGINLLNRRMRTRLYGGVGGASG*
Ga0070709_100986524	3300005434	Corn, Switchgrass And Miscanthus Rhizosphere	FAGSEDGEAETETCRAAKPLWRTTNRTSGPRGLNSLNRRMRTRTYGGVAGEWATTPPYAD
Ga0070709_101516331	3300005434	Corn, Switchgrass And Miscanthus Rhizosphere	MAPANQLRLSFAGSEDGEAETETCRAAKPCGERRIEPHGPQGLNSLNRRMRTRMYGGVAGEEGDRPPYAD
Ga0070713_1000890454	3300005436	Corn, Switchgrass And Miscanthus Rhizosphere	MAPANQLRLSFTGSEDGEAETDLQSGEALVANNESNLRPEGLNSLNRRMRTRTYGGVAGEWATTPPYAD*
Ga0066681_100010748	3300005451	Soil	MGGTAPANQLRLSFTGSEDGEAETDLQSGEALVANDDSNLQPVRLNLLNRRMRTRLYGGVGGASR*
Ga0070697_1000058454	3300005536	Corn, Switchgrass And Miscanthus Rhizosphere	MSGTAPANQLRLSFTGSEDGEAGTETCRAAKLLWRTTTRTSGPQGLNLLNRRMRTRLYGGVGGASR*
Ga0070730_110402322	3300005537	Surface Soil	MGGTAPANQLRLSFTGSEDGEAETDLQSGEALVANDESNLTARKLNLLNRRMRTRMYGGVAGE
Ga0066661_100658021	3300005554	Soil	MGGMAPVNQLRLSFTGSEDGEAETETG*SGEAPAANDDLNLTAFAGFLLNRRMRTRLYGGVGGAS
Ga0066661_107087671	3300005554	Soil	MGGIAPANQLRLSFAGSEDGEAETETCRAAKPLWRTTIRTSGPQGLNSLNRRMRTRLYGGVGGAS
Ga0066692_101033801	3300005555	Soil	MGGTAPANQLRLSFTGAEDGEAETDTFERRSPCGERRLESHGPRGLNLLNRRMRTRLYGGVGGASG*
Ga0066707_105798042	3300005556	Soil	MGGIAPANQLRLSFTGSEDGEAETETCRVAKPLWRTTTRTSGPQGLNLLNRRMRTRLYGGVGGASR*
Ga0066700_108846681	3300005559	Soil	MAPANQLRLSFTGSEDGEAKTETCRAAKPLWRTTTRTSGPRGLNLLNRPMRTRTSGAVAGESGRPLPLC
Ga0066699_105585423	3300005561	Soil	MGGMAPVNQLRLSFTGSEDGEAETETGRAAKPLRERRLEPHGINLLNRRMRTRLYGGVGGAS
Ga0066703_109126522	3300005568	Soil	MGGIAPANQLRLSFTGSEGGEAETETCRVAKPLWRTMTRTSGPRGLNLLNRRMRTGVGGASR*
Ga0066691_107706901	3300005586	Soil	PANQLRLSFTGSEDGEAETETCRVAKPLWRTTNRTSGPRGLNLLNRGMRTGMMYGGVAGEAGDRSPYAD*
Ga0070761_103271781	3300005591	Soil	VKLMGGIAPANQPRLSFTGSEDGEAETETGRAAKPLGERRIESHGPSGLNLLNRRMRTRLYGGVGGASG*
Ga0066706_113149471	3300005598	Soil	MGGIAPANQPRLSFTGSEDGEAETEPYSGEAPAANDDSNLTALAGFTLNRRMRTRLYGGVGGASG*
Ga0070764_100968431	3300005712	Soil	VRKAQTVRVNSSVELAGGTAPANQLRLSFTGSEDGEAETATCRVLKPLRERRLEPHGPQGLSLLNRRMRARLYGGVGGASR*
Ga0068860_1025552502	3300005843	Switchgrass Rhizosphere	MAPANQLRLSFQVQKTGEAENGNLQSGEALVANDDSNPTAREGFSLNRRMRTCMYGGVAGEDGRP
Ga0070717_120040651	3300006028	Corn, Switchgrass And Miscanthus Rhizosphere	MSGTAPANQLRLSFTGSEDGEAGTETCRAAKLLWRTTTRTSGPQGLNLLNRRMRTRLYGGVGGAS
Ga0075014_1006770952	3300006174	Watersheds	MAPANQLRLSLAGSEDGEAETATCRVAKPLGERRVDPPARQGSILRNRPVRTRMPGGVAG
Ga0070765_1001365703	3300006176	Soil	MGGIAPANQPRLSFTGSEDGEAETETGRAAKPLGERRIESHGPSGLNLLNRRMRTRLYGGVGGASG*
Ga0070765_1005416062	3300006176	Soil	MGGTAPANQLRLSFAGSEDGEAKTDLQSGEALVANDDSNLQPAGLNSLNRRMRTRMYGGVAGEVGDHSPYAD*
Ga0079222_113960282	3300006755	Agricultural Soil	VNVELMGGTAPANQPRLSFTGSEDGEAETETCRAAKPLWRTMTRTSGPQGLNLLNRRMRTRMYGGAGGASR*
Ga0066659_106731541	3300006797	Soil	VELMGGTAPANQLRLSFTGSEDGEAETDLQSGEALVANDESTSGPQGLNSLNRRMRTRLYGGVGGASR*
Ga0066660_104627472	3300006800	Soil	VVNVELTGGTAPANQLRLSFTGSEDGEAETETCGAAKPLWRTTPRTSGPRGLNSLNRRMRTRMYGGVGGEDE*
Ga0079221_109729611	3300006804	Agricultural Soil	MGGTAPANQPRLSFTGSEDGEAETETCRAAKPLWRTMTRTSGPQGLNLLNRRMRTRMYGGVGGVSR*
Ga0073928_109259152	3300006893	Iron-Sulfur Acid Spring	MGGTAPANQLRLSFTGSEDGEAETETCRAAKPLWRTTTRTSGPSGLNLLNRRMRTRLYGGVGGASR*
Ga0099794_103376291	3300007265	Vadose Zone Soil	MGGTAPANQLRLSFAGSADGEAETETCRAAKPLWRTMTRTSGPQGLNLLNRRTRTRIYGG
Ga0099830_114435041	3300009088	Vadose Zone Soil	MSGTAPANQLRLSFTGSEDGEAETETCRVAKLLWRTTTRTSGPQGLNLLNRRMRTRLYGGVGGA
Ga0105241_117300521	3300009174	Corn Rhizosphere	MAPANQLRLSFAGSEDGEAETETCRAAKPCGERRIEPHGPQGLNSLNRRMRTRMYGGVAGEDGRP
Ga0127500_10885061	3300010103	Grasslands Soil	MGGTAPANQLRLSFTGSEDGEAETETCRAAKPLWRTTNRTSGPRGLNLLNRRTRTRMYGG
Ga0127472_10437961	3300010106	Grasslands Soil	MGGTAPANQLRLSFTGSEDGEAETETCRAAKPLWRTTIRTSGPQGLNSLNRRM
Ga0127497_10736831	3300010109	Grasslands Soil	MGGTAPANQLRLSFTGSEDGEAETETCRAAKPLWRTMTRTSGPSGLNLLNRRM
Ga0127495_10101141	3300010115	Grasslands Soil	MGGTAPANQLRLSFTGSEDGEAETETCRAAKPLWRTMTRTSGRPHGLNLLNR
Ga0127451_10668231	3300010120	Grasslands Soil	MGGTAPANQLRLSFTGSEDGEAETETCRVAKPLWRTTTRTSGPQGLNLLNR
Ga0127455_10642691	3300010132	Grasslands Soil	MGGIAPANQLRLSFAGSEDGEAETETCRAAKPLWRTTIRTSGPQGLNSLNRRMRTR
Ga0127456_11283931	3300010140	Grasslands Soil	MGGIAPANQLRLSFAGSEDGEAETETCRAAKPLWRTTNRTSGPQGLNSLNRRMRTRL
Ga0127499_11316501	3300010141	Grasslands Soil	MGGTAPANQLRLSFTGSEDGEAETETCRAAKPLWRTTNRTSGPRGLNLLNRRMRT
Ga0134082_101997101	3300010303	Grasslands Soil	MGGTAPANQLRLSFTGSEDGEAETETCRVAKPLWRTTTRTSGPHGLNLLNRRMRTRLYG
Ga0134067_104556831	3300010321	Grasslands Soil	GGTAPANQLRLSFAGSEDGEAETEICRAVKPRGERRFEPYGSSGLNSLNRRMRTCMYGGVGGEDG*
Ga0126352_10896581	3300010859	Boreal Forest Soil	MGGTAPANQLRLSFTGSEDGEAETETCRAAKPLWRTTTRTSGPQGLNLLNRRMRTRLYGG
Ga0126352_10921151	3300010859	Boreal Forest Soil	MGGTAPANQLRLSFTGSEDGEAETETCRVAKLLWRTTTRTSGPQGLNLLNR
Ga0126348_12411991	3300010862	Boreal Forest Soil	MGGIAPAHQPRLSFTGSEDGEAETETCRVAKPLWRTTTRTSGPQGLNLLNRRMRTRLYG
Ga0126359_13796391	3300010869	Boreal Forest Soil	MSGTAPANQLRLSFTGSEDGEAETETCRVAKLLWRTTTRTSGPQGLNLLNRRMRTRLYGG
Ga0138531_1703381	3300011053	Peatlands Soil	MGGTAPANQLRLSFTGSEDGEAETETCRAAKPLWRTTTRTSGPQGLNLLNRRMRTRLYGGVGG
Ga0138582_10732891	3300011062	Peatlands Soil	MGGTAPANQLRLSFTGSEDGEAETETCRAAKPLWRTTTRTSGPQGLNLLNRRMRTRLYG
Ga0150983_122697791	3300011120	Forest Soil	MGGTAPANQLRLSFADSEDGEAETEACRAAKPLWRTTTRTSGPQGLNLLNRRMRTRLYG
Ga0150983_160501271	3300011120	Forest Soil	MSGTAPANQLRLSFTGSEDGEAETETCRVAKPLWRTTTRTSGPQGLNLLNRRMRTRLYGG
Ga0138532_10479071	3300011305	Peatlands Soil	MGGTAPANQLRLSFTGSEDGEAETETCRAAKPLWRTTTRTSGPQGLNLLNRRMRTRLYGGVGGA
Ga0137399_101547142	3300012203	Vadose Zone Soil	VELMGGTAPANQLRLSFAGSEDGEAETETCRVAKPLWRTMTRTSGPQGLNLLNRPMRTRLSGGVGGASR*
Ga0137362_100539352	3300012205	Vadose Zone Soil	MGGTAPANQLRLSFTGSEDGEAETETCRAAKPLWRTMTRISGPQGLNLLNRRTRTRIYGGVGGASR*
Ga0137381_101511621	3300012207	Vadose Zone Soil	MGGTAPANQLRLSFTGSQDGEAETETCRAAKPLWRTTTRTSGPQEFNL
Ga0137384_103011722	3300012357	Vadose Zone Soil	MGGMAPANQLRLSFTGSEDGEAETETCRAAKPLWRTMTRTSGPQGLNLLNRPMRTRMSGG
Ga0137361_100381702	3300012362	Vadose Zone Soil	MGGTAPANQLRLSFTGSEDGEAETETCRAAKPLWRTMTRTSGPQGLNLLNRRTRTRIYGGVGGASR*
Ga0134037_12134181	3300012372	Grasslands Soil	MGGIAPANQLRLSFAGSEDGEAETETCRAAKPLWRTTIRTSGPQGLNSLNRRMRTRLY
Ga0134052_12012511	3300012393	Grasslands Soil	MGGIAPANQLRLSFAGSEDGEAETETCRAAKPLWRTTIRTSGPQGLNSLNRRMRTRLYG
Ga0134051_12774861	3300012398	Grasslands Soil	MGGTAPANQLRLSFTGSEDGEAETETCRVAKPLWRTTTRTSGPQGLNLLNRRMRTRLYG
Ga0134053_14333792	3300012406	Grasslands Soil	MGGTAPANQLRLSFTGSEDGEAETETCRAAKPLWRTTNRTSGPRGLNLLNRRTRTRM
Ga0137396_112161972	3300012918	Vadose Zone Soil	MGGIAPANQPRLSFAGSEDGEAETETCRAAKPLWRTMTRTSGPQGLNLLNRPMRTR
Ga0137359_101658041	3300012923	Vadose Zone Soil	TAPANQLRLSFTGSEDGEAETETCRVAKPLWRTTPRTSGPRGLNSLNRRMRTRMSGGVGGEDGRPSPYPHFFPIGC*
Ga0137419_101868551	3300012925	Vadose Zone Soil	LSFAGSEDGEAETETCRVAKPLWRTMTRTSGPQGLNLLNRPMRTRLSGGVGGASR*
Ga0181523_106420171	3300014165	Bog	MGGTAPANQLRLSFTGSEDGEAETETCRAAKPLWRTTTRTSGPRGLNSLNRRMRTRLY
Ga0137420_10871382	3300015054	Vadose Zone Soil	MGGTAPANQLRLSFAGSEDGEAETETCRVAKPLWRTTTRTSGPPGLNLLNRRTRTRIYGGVGGASR*
Ga0137420_13963583	3300015054	Vadose Zone Soil	DGEAETETCRVAKPLWRTTTRTSGPPGLNLLNRRTRTRIYGGVGGASR*
Ga0187814_102716681	3300017932	Freshwater Sediment	MGGTAPANQLRLSFADSEDGEAETEACRAAKPLWRTTTRTSGPQGLNLLNRRMRTR
Ga0181501_10098611	3300019230	Peatland	MSGTAPANQLRLSFTGSEDGEAETETCRVAKLLWRTTTRTSGPQGLNLLNRRMRTR
Ga0181502_10932351	3300019242	Peatland	MSGTAPANQLRLSFTGSEDGEAETETCRVAKLLWRTTTRTSGPQGLNLLNRRMRTRLYG
Ga0181508_14415731	3300019256	Peatland	MSGTAPANQLRLSFTGSEDGEAETETCRVAKLLWRTTTRTSGPQGLNLLNRRMRTRLY
Ga0182028_13255213	3300019788	Fen	VELTGGIAPANQLRLSFTGSEDGEAETETCKAAKPLWRTMTRTSGPQGLTH
Ga0193729_10133243	3300019887	Soil	MGGTAPANQLRLSFTGSEDGEAETETCRVAKPLWRTMTRTSGPRGLNLLNRRMRTRMYGGVAGESGRPLPLCRFLGIFFSYLLA
Ga0210399_100390631	3300020581	Soil	LSFTGSEDGEAETETCRVAKPLWRTTTRTSGPLGLNLLNRPVRTRMPGGVAGEGG
Ga0179596_103936441	3300021086	Vadose Zone Soil	MSGTAPANQLRLSFTGSEDGEAETETCRVAKLLWRTTTRTSGPQGLNLLNRRMRTRLYGGLGGAS
Ga0210408_109842411	3300021178	Soil	MGGTAPANQLRLSFTGSEDGEAETVTCRAAKPLWRTTTRTSGPQGLNSLNRRMRTRLYGG
Ga0126371_123788851	3300021560	Tropical Forest Soil	MAPANQLRLSFAGSEDGEAETETCRVAKPLWRKTTRTSGPFGLNLRNRRMRTRTYGGVAGESGRPLPLCRFKP
Ga0213854_13318182	3300021855	Watersheds	MGGTAPANQLRLSFAGSEDGEAETETCRAAKPLWRTTTRTSGPQGLNLLNRRMRTRLY
Ga0213849_10842711	3300021857	Watersheds	MGGTAPANQLRLSFAGSEDGEAETETCRAAKPLWRTTTRTSGPQGLNLLNRRMRTRLYG
Ga0213853_108620972	3300021861	Watersheds	MGGTAPANQLRLSFAGSEDGEAETETCRAAKPLWRTTTRTSGPQGLNLLNRRMRTRLYGGVGGA
Ga0242667_10431091	3300022513	Soil	MGGTAPANQLRLSFAGSEDGEAETETCRAAKPLWRTMTRTSGPSGLNLLNRPMR
Ga0242659_11142331	3300022522	Soil	MAPANQLRLSFTGSEDGEAETETCRAAKPLWRTTTRTSGPQGLNLLNRRMRTRL
Ga0242664_10684191	3300022527	Soil	MGGTAPANQLRLSFAGSEDGEAETETCRAAKPLWRTMTRTSGPSGLNLLNRPMRTRMSGG
Ga0242668_11119091	3300022529	Soil	MAPANQLRLSFTGSEDGEAETETCRAAKPLWRTTTRTSGPQGLNLLNRRMRTRLYG
Ga0242660_11839311	3300022531	Soil	MGGTAPANQLRLSFAGSEDGEAETETCRAAKPLWRTMTRTSGPSGLNLLNRPMRTRMS
Ga0242662_102595871	3300022533	Soil	MGGTAPANQLRLSFTGSEDGEAETVTCRAAKPLWRTTTRTSGPQGLNSLNRRMRTR
Ga0222756_10509491	3300022709	Soil	MAPANQLRLSFTGSEDGEAETETCRAAKPLWRTTTRTSGPQGLNSLNRRMRTRLY
Ga0242673_10985121	3300022716	Soil	MGGTAPADQLRLSFTGSEDGEAETETCRAAKPLWRTTTRTSGPQGLNLLNRRMRTRLYG
Ga0242672_11072941	3300022720	Soil	MAPANQLRLSFAGSEDGEAETETCRAAKPCGERRIEPHGPQGLNSLNRRMRTRMYG
Ga0247664_11217131	3300024232	Soil	MAPANQLRLSFAGSEDGEAETETCRAAKPCGERRIEPHGPQGLNSLNRRMRTRMYGGVAGEDGRPSPLCRFESRGSPHLDNQED
Ga0137417_13988797	3300024330	Vadose Zone Soil	FTGSEDGEAETETCRAGKPLWRNDDSNLRPRGLNLLNRRMRTRLYGGVGGASR
Ga0209584_104156431	3300025878	Arctic Peat Soil	MGGTAPANQLRLSFTGSEDGEAETETCRAAKPLWRTTTRTSGPQGLNSLNRRMRTRLYSGVG
Ga0207699_107581201	3300025906	Corn, Switchgrass And Miscanthus Rhizosphere	MAPANQLRLSFAGSEDGEAETETCRAAKPCGERRIEPHGPQGLNSLNRRMRTRMYGGVAGEDGRPSPLCRFWGSFECAQ
Ga0257166_10456851	3300026358	Soil	MGGTAPANQLRLSFAGSEDGEAETETCRAAKPLWRTTTRTSGPRGLNLLNRRMRTRLYGGVG
Ga0257155_10661121	3300026481	Soil	MGGTAPANQLRLSFTGSEDGEAETETCRAAKPLWRTMTRTSGPQGRNLLNRPMR
Ga0179587_100042143	3300026557	Vadose Zone Soil	MGGTAPANQLRLSFTGSEDGEAETETCRAAKPLWRTMTRTSGPQGLNLLNRRTRTRIYGGVGGASR
Ga0209735_10122983	3300027562	Forest Soil	NVELMGGTAPANQLRLSFTGSEDGEAETETCRAAKPLWRTTTRTSGPQGLNLLNRRMRTRLYGGVGGASR
Ga0209068_108620091	3300027894	Watersheds	MGGTAPANQLRLSFAGSEDGEAATETCRAAKPLWRMTTRTSGPHGLNSLNRRM
Ga0209006_101542491	3300027908	Forest Soil	RLSFTGSEDGEAETETCRAAKPLWRTTTRTSGPSGLNLLNRRMRTRLYGGCAGKIGME
Ga0307919_10424431	3300030718	Soil	MGGTAPANQLRLSFTGSEDGEAETETCRAAKPLWRTMTRTSGPRGLNLLNRRMRTRMYGGVAGEDGQPSPLCR
Ga0075396_19305912	3300030776	Soil	MSGTAPANQLRLSFTGSEDGEAETETCRVAKLLWRTTTRTSGPQGLNLLNRRMRT
Ga0265751_1119541	3300030873	Soil	MGGIAPANQLRLSSAGSEDGEAETETCRAAKPLWRTTTRTSGPQGLNLLNRRMRTRLYG
Ga0265761_1094901	3300030889	Soil	MSGTAPANQLRLSFTGSEDGEAETGTCRAAKPLWRTTTRTSGPSGLNSLNRRMRTRLY
Ga0138297_17868581	3300030962	Soil	LSFAGSEDGEAETETCRAAKPLWRTTNRTSGPQGLNSLNRRMRTRMYGGVGGEDE
Ga0099845_10055521	3300030975	Boreal Forest Soil	MGGTAPANQLRLSFTGSEDGEAETETCRVAKLLWRTTTRTSGPQGLNLLNRRMRTRLYGG
Ga0318550_103191461	3300031797	Soil	MAPANQPRLSLTGSEDGEAETETSRAAKPLWRKTNRPSGPQGPNLTEPP
Ga0335080_115480061	3300032828	Soil	MGGTAPANQLRLSFAGSEDGEAETETCRVAKPLWRTTTRTSGPQGLNLLNRPMRTRM

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F064997

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences