Sample 3300002656

Basic Information
IMG/M Taxon OID	3300002656 Open in IMG/M
GOLD Reference (Study \| Sequencing Project \| Analysis Project)	Gs0085736 \| Gp0056710 \| Ga0005494
Sample Name	Forest soil microbial communities from Harvard Forest Long Term Ecological Research site in Petersham, Massachusetts, USA - MetaT HF143 (Metagenome Metatranscriptome, Counting Only)
Sequencing Status	Permanent Draft
Sequencing Center	DOE Joint Genome Institute (JGI)
Published?	N
Use Policy	Open

Basic Information

IMG/M Taxon OID

GOLD Reference
(Study | Sequencing Project | Analysis Project)

Sample Name

Forest soil microbial communities from Harvard Forest Long Term Ecological Research site in Petersham, Massachusetts, USA - MetaT HF143 (Metagenome Metatranscriptome, Counting Only)

Sequencing Status

Permanent Draft

Sequencing Center

DOE Joint Genome Institute (JGI)

Published?

Use Policy

Open

Dataset Contents
Total Genome Size	6021844
Sequencing Scaffolds	31
Novel Protein Genes	36
Associated Families	32

Dataset Contents

Total Genome Size

6021844

Sequencing Scaffolds

Novel Protein Genes

Associated Families

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
Not Available	25
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Fungi incertae sedis → Blastocladiomycota → Blastocladiomycota incertae sedis → Blastocladiomycetes → Blastocladiales → Blastocladiaceae → Allomyces → Allomyces macrogynus	1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Cytophagia → Cytophagales → Hymenobacteraceae → Hymenobacter → Hymenobacter aerophilus	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfovibrionales → Desulfovibrionaceae → Desulfovibrio	1
All Organisms → cellular organisms → Eukaryota → Discoba → Heterolobosea → Tetramitia → Eutetramitia → Vahlkampfiidae → Naegleria → Naegleria gruberi	1
All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Opitutae → Opitutales → Opitutaceae → Lacunisphaera → Lacunisphaera limnophila	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → Nostocales → Nostocaceae → Nostoc → Nostoc punctiforme	1

Dataset Phylogeny

Taxonomy Groups

Number of Scaffolds

Not Available

All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Fungi incertae sedis → Blastocladiomycota → Blastocladiomycota incertae sedis → Blastocladiomycetes → Blastocladiales → Blastocladiaceae → Allomyces → Allomyces macrogynus

All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Cytophagia → Cytophagales → Hymenobacteraceae → Hymenobacter → Hymenobacter aerophilus

All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfovibrionales → Desulfovibrionaceae → Desulfovibrio

All Organisms → cellular organisms → Eukaryota → Discoba → Heterolobosea → Tetramitia → Eutetramitia → Vahlkampfiidae → Naegleria → Naegleria gruberi

All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Opitutae → Opitutales → Opitutaceae → Lacunisphaera → Lacunisphaera limnophila

All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → Nostocales → Nostocaceae → Nostoc → Nostoc punctiforme

Ecosystem Assignment (GOLD)
Name	Forest Soil Microbial Communities From Harvard Forest Long Term Ecological Research (Lter) Site In Petersham, Ma, For Long-Term Soil Warming Studies
Type	Environmental
Taxonomy	Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil → Forest Soil Microbial Communities From Harvard Forest Long Term Ecological Research (Lter) Site In Petersham, Ma, For Long-Term Soil Warming Studies

Ecosystem Assignment (GOLD)

Name

Forest Soil Microbial Communities From Harvard Forest Long Term Ecological Research (Lter) Site In Petersham, Ma, For Long-Term Soil Warming Studies

Type

Environmental

Taxonomy

Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil → Forest Soil Microbial Communities From Harvard Forest Long Term Ecological Research (Lter) Site In Petersham, Ma, For Long-Term Soil Warming Studies

Alternative Ecosystem Assignments
Environment Ontology (ENVO)	forest biome → land → forest soil
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline)

Alternative Ecosystem Assignments

Environment Ontology (ENVO)

forest biome → land → forest soil

Earth Microbiome Project Ontology (EMPO)

Free-living → Non-saline → Soil (non-saline)

Location Information
Location	Harvard Forest LTER, Petersham, MA, USA
Coordinates	Lat. (^o)	42.53312	Long. (^o)	-72.189707	Alt. (m)	N/A	Depth (m)	0 to .1
Location on Map

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Location Information

Location

Harvard Forest LTER, Petersham, MA, USA

Coordinates

Lat. (^o)

42.53312

Long. (^o)

-72.189707

Alt. (m)

N/A

Depth (m)

0 to .1

Location on Map

Zoom:

Family	Category	Number of Sequences	3D Structure?
F000203	Metagenome / Metatranscriptome	1619	Y
F001273	Metagenome / Metatranscriptome	733	Y
F001357	Metagenome / Metatranscriptome	716	Y
F003383	Metagenome / Metatranscriptome	490	Y
F007311	Metagenome / Metatranscriptome	353	Y
F008027	Metagenome / Metatranscriptome	340	Y
F015068	Metagenome / Metatranscriptome	257	Y
F015698	Metagenome / Metatranscriptome	252	Y
F020134	Metagenome / Metatranscriptome	225	Y
F021676	Metagenome / Metatranscriptome	218	Y
F021721	Metagenome / Metatranscriptome	217	Y
F021919	Metagenome / Metatranscriptome	216	Y
F023505	Metagenome / Metatranscriptome	209	Y
F024050	Metagenome / Metatranscriptome	207	Y
F026580	Metagenome / Metatranscriptome	197	Y
F029356	Metagenome / Metatranscriptome	188	Y
F031389	Metagenome / Metatranscriptome	182	Y
F032287	Metagenome / Metatranscriptome	180	Y
F035144	Metagenome / Metatranscriptome	172	Y
F039025	Metagenome / Metatranscriptome	164	Y
F048323	Metagenome / Metatranscriptome	148	Y
F057922	Metagenome / Metatranscriptome	135	N
F062515	Metagenome / Metatranscriptome	130	Y
F063428	Metagenome / Metatranscriptome	129	Y
F069734	Metagenome / Metatranscriptome	123	N
F071421	Metagenome / Metatranscriptome	122	N
F078329	Metagenome / Metatranscriptome	116	Y
F088037	Metagenome / Metatranscriptome	109	N
F091420	Metagenome / Metatranscriptome	107	N
F093040	Metagenome / Metatranscriptome	106	N
F094972	Metagenome / Metatranscriptome	105	Y
F098814	Metagenome / Metatranscriptome	103	N

Family

Scaffold	Taxonomy	Length	IMG/M Link
Ga0005494J37277_100004	Not Available	522	Open in IMG/M
Ga0005494J37277_100013	Not Available	882	Open in IMG/M
Ga0005494J37277_100046	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Fungi incertae sedis → Blastocladiomycota → Blastocladiomycota incertae sedis → Blastocladiomycetes → Blastocladiales → Blastocladiaceae → Allomyces → Allomyces macrogynus	824	Open in IMG/M
Ga0005494J37277_100056	Not Available	834	Open in IMG/M
Ga0005494J37277_100132	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Cytophagia → Cytophagales → Hymenobacteraceae → Hymenobacter → Hymenobacter aerophilus	621	Open in IMG/M
Ga0005494J37277_100195	Not Available	762	Open in IMG/M
Ga0005494J37277_100241	Not Available	748	Open in IMG/M
Ga0005494J37277_100286	Not Available	963	Open in IMG/M
Ga0005494J37277_100338	Not Available	560	Open in IMG/M
Ga0005494J37277_100367	Not Available	565	Open in IMG/M
Ga0005494J37277_100419	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfovibrionales → Desulfovibrionaceae → Desulfovibrio	591	Open in IMG/M
Ga0005494J37277_100509	Not Available	774	Open in IMG/M
Ga0005494J37277_100517	Not Available	508	Open in IMG/M
Ga0005494J37277_100550	Not Available	597	Open in IMG/M
Ga0005494J37277_100739	Not Available	788	Open in IMG/M
Ga0005494J37277_100850	Not Available	763	Open in IMG/M
Ga0005494J37277_100981	Not Available	511	Open in IMG/M
Ga0005494J37277_101051	Not Available	763	Open in IMG/M
Ga0005494J37277_101585	Not Available	838	Open in IMG/M
Ga0005494J37277_101668	All Organisms → cellular organisms → Eukaryota → Discoba → Heterolobosea → Tetramitia → Eutetramitia → Vahlkampfiidae → Naegleria → Naegleria gruberi	523	Open in IMG/M
Ga0005494J37277_102107	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Opitutae → Opitutales → Opitutaceae → Lacunisphaera → Lacunisphaera limnophila	579	Open in IMG/M
Ga0005494J37277_102473	Not Available	580	Open in IMG/M
Ga0005494J37277_102756	Not Available	589	Open in IMG/M
Ga0005494J37277_102766	Not Available	587	Open in IMG/M
Ga0005494J37277_103485	Not Available	588	Open in IMG/M
Ga0005494J37277_104527	Not Available	501	Open in IMG/M
Ga0005494J37277_105335	Not Available	570	Open in IMG/M
Ga0005494J37277_105525	Not Available	780	Open in IMG/M
Ga0005494J37277_105634	Not Available	582	Open in IMG/M
Ga0005494J37277_105944	Not Available	566	Open in IMG/M
Ga0005494J37277_111372	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → Nostocales → Nostocaceae → Nostoc → Nostoc punctiforme	511	Open in IMG/M

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0005494J37277_100004	Ga0005494J37277_1000041	F057922	VPSDPANSPFSDWHAQSEHSTQGSGDVVLLLPVAAFIRPRISAPEPICLFYLLEARVSKQTFARPHRLLPFESHRSEVNAPALSLRRNSELFFQSVRP*TPILACALTPSGYVRCPKPVTVFQAQSSQTSIQLPLPFRTFILPDRSAQSVARSEKLAFVSGPFSLRSPQASINF
Ga0005494J37277_100013	Ga0005494J37277_1000131	F069734	MSPWLNRTLHPRLTPRMNLRVHSGHGKLGMASGALLVPIRRFTIGKPTTNSPTETLTYAFYHA
Ga0005494J37277_100013	Ga0005494J37277_1000132	F003383	MRSRVAPLPRSSRSARVASPGCPFPAPFLLSRRPNPRVAPRFRAFGCAGDSSFESPRTRMPLALLVSARLRVAPVALAFSCPACDVGLGSPLVLHLRLYRRWIIESPRCSHHSAVPTYQSSSCPKSQPFGIADDSLFELPRTLNPPVPIDGYPSYLGSRTIRFALVRSPSCPGHLPSATAIDQFPGCPKSWVSHRSPIPLASSFPESWILG*
Ga0005494J37277_100046	Ga0005494J37277_1000461	F007311	CWPPHIAVAPVMDYSMLDALRSPLRPDCSVLRFLRPVPASDLTRRPTLSAPRLLRIAPHSPPCARAVHGSPRATDCSVVQHLELLPRLRIAPPAMPAFRAVLGLLLAHRLLPHGVPGLLRVRRLARHAGLRIAPYSDALRPWPAHGFLRARS*
Ga0005494J37277_100056	Ga0005494J37277_1000561	F063428	GTKRTVAVERLRLFVSKIIPGDRGKVGLGWLARLLLNWPKGRTAEAKVTGSSGAFARAKCE*
Ga0005494J37277_100132	Ga0005494J37277_1001321	F021676	MPDGPATRPKTPLAVENGVGKPAAPEKGAPNAGSGKREWRTPIP
Ga0005494J37277_100184	Ga0005494J37277_1001841	F039025	PLAAPAFNLRLASAANFPARPANPPARIGVVSPGSVGGKYPAFALYYALPIDWLLTFQLALVSGLQLGLRLLPTHTWRRPSARLVWQLPILIGCCCNSQLAPSAAATPSSRWRLPPVATPVANCRLASAVLLRLCRFRLARLAPCLLTSGWAFDAPLVSTEPCIAGAVDEYSVSTGSCTLRICQ
Ga0005494J37277_100195	Ga0005494J37277_1001952	F003383	ARVASPGCPFPAPFLLSRRPNPQVAPRFRTFGSAGDGPFELPRTSHAFSVAGFGKVPSCPGRYAFSCSACDEGRGSPLVLHLRLDRRWVIELPRCSHHSAVPTYRFSGCPKFRPFGIADDSLSGLPRTLNPPAPIDGYPSYPGSRIPRFASVESPGCPGHFPFGYGNPISRLP
Ga0005494J37277_100241	Ga0005494J37277_1002412	F032287	VVPQGAAWDLRRNPQDTERPAERQAARFRQEKIWRGASMSKGCDETAGDTSGANPDPESPSKKRGQAARKGSRERGSEHEETRTPTRRDTEDG*
Ga0005494J37277_100286	Ga0005494J37277_1002861	F024050	MDVRVAPNFAFLRRCRFQPGSESPRCLLPSSSAPDVGLGFPLVLHLRLYRRWIIESPRFSHLSAVPSCQSSSCPEPQPFGIADDSPPRLPQTSNPPAPIDGYPSYLGSRTIRFALVEAPSYPGSSPSATAIDQFPGCPKSWVSHRSPIHHASSCPESWFLG*
Ga0005494J37277_100338	Ga0005494J37277_1003381	F031389	LTRPRRRIERSAVAAGEQKAASRSELLPEWEKADAHQSFDPWLNKIGCGEQRAYVTPFPDAKFRP
Ga0005494J37277_100367	Ga0005494J37277_1003671	F015068	DVADLERSAAETLEIETGGGEREEIGRSRKAGRKTANPAERFDPEGGKSPKGEWRLEERSSSKPKLQRARSNEAAETGANRTG*
Ga0005494J37277_100419	Ga0005494J37277_1004191	F021919	FQVTRSRSQTPRRHATAQSFASRIAGRHPFGSPPRSFKRNGSIPRGSPASFPSWNRHLEAAFHSPETTARFQATISRSKLPTYSFDTLPCIRPARSDPDSPTRPGSPRRAQDHYRNPVARLLPGTSNPSSDLHSPSGPFGPLRIKAFNPISGRKAHLLSAPDCPSLPNIESILLVRCQITAPGSLSVQWLAVPQTS
Ga0005494J37277_100509	Ga0005494J37277_1005091	F029356	MTTLILNPRGKDGVRPPARVAGRGEATTRRLDRLPGESPGTDVRKTNAEAEATRLPERSLGT
Ga0005494J37277_100517	Ga0005494J37277_1005172	F062515	MLKTTPLDCETKGSLREKRRDPWLWANASLEAMADPELVVKTRERE
Ga0005494J37277_100522	Ga0005494J37277_1005222	F000203	GMGVRHALFPDAGIWRTLAASFPTPFSTASGVTGLMTGPSSALRSLNFE*
Ga0005494J37277_100550	Ga0005494J37277_1005501	F026580	NRSELDEVTQAGFEPARIAVTQRVNGCYCASARSEGSGGFRKEVRQKKKDAERRDKWSVRTGRDTRPRQGP*
Ga0005494J37277_100636	Ga0005494J37277_1006361	F098814	SKPDFQRCSPPACTASNMHSESSSVLPASSPTAGFPGCRIKTAKRAAYF*TGLSARNGLSLARDDLRSRGSHHEVKVPGLLLRFRISRLFRPVRLLLRYQFRLAPVSAASTLQTRCGLTARFCRLRFQLPLPFGNIASLGITASTGLAASQPAFRNCPISVRSPPPYSIARSGCGSSFPARYCFVGLLFLKP
Ga0005494J37277_100739	Ga0005494J37277_1007392	F024050	GPSAVPAMVGSSYPELRMPSAVLVLARFRVSPVAPASSCSARDEGLELPLVPHLRLHRQWIVESPRLSHLSAVPTGQSSSRPESRPFGIADDSSPRLPQTPNPPVPADRYPSYLGSRTIRFALVESPGCPGHSPLATAIDQFPGCPKSRVFRRSPILLNSSRPEPWFLG*
Ga0005494J37277_100850	Ga0005494J37277_1008502	F029356	MTTLILNPRGKDGGRPPARVAGRGEAKTRKLGRLPGESPGTEVRKISAEAEATRLPER
Ga0005494J37277_100981	Ga0005494J37277_1009811	F021721	DGSDNRLPLAIATFQPATGQSNKRALNELTILPEPESRYGLSLAHNDAYATIARSMFLACTFVSLSKIFANPFDTRLSRSVRFRGRSGAMSTPDTRFPRRSPTLPIFPRSPLPFGSSYENPLDRSVQPVPDTGSSPCLTPDRPLLPAASSFDSAADQCSKLAVPCSAIVP
Ga0005494J37277_101051	Ga0005494J37277_1010511	F071421	LPPLSFLRDGPSQFHSGLTATMICDMRLSGGGNLSPVTPKSGYRFRPTSRNLAKVVAIGQPPTDPIAACWENQQDFS*
Ga0005494J37277_101585	Ga0005494J37277_1015851	F093040	MRLAVAEGVKHALGVHHPKTGTDRKGPGLPTNPDLSPVTRDYPRRSRVDGQSPREASATLNLR
Ga0005494J37277_101668	Ga0005494J37277_1016681	F008027	PVLQQHPKMSIVYYSVERPIQILVANYGGRDVTNIARDQYHKHGVFTATNDALGGDPLPNVPKFLHVIYSFSGVLGSVSIPEHQQFSPATPPTTVLGALYGSADVTEKVRGLGHEFQVENGHFGDPNPGIFKNFSVVYSKNGQIKSISAKEHDRVHLH*
Ga0005494J37277_102107	Ga0005494J37277_1021071	F020134	MTPSRGAGDLAYPMVAHRKGRAAPAATFLSPVARDYPSRALGGVFSPP
Ga0005494J37277_102473	Ga0005494J37277_1024731	F015698	SKPDSQLRSPPACTALSFVFRSAVRFCLSAPLVAFSSPPPSSTLPGAPQSLSATGPVARDGLSLPSNGLRLRVRSRINVPGLPLRSPHGHSQARSAFRSTARCGSPRYRQLPSFSPLPARFRARSASPPTAFPIRIFTSLWINVLPDSLPIGPPSDYARSPLAPRSRLSITSRWKRINA*GPLRFRRLAV
Ga0005494J37277_102756	Ga0005494J37277_1027561	F071421	AQQAIQLPPLSFPRDGPPQFHSGLTATMVCGMRLSGGGNLSPITLESGYRFGPTPRNLARVVAIGQPPTDPIAARWENQRDFS*
Ga0005494J37277_102766	Ga0005494J37277_1027661	F094972	MNPLPDSVPAFLADTEPPLPFRDFYIPLQIAAFDSAFRSKAHLYELPDSPSLPVSFMLLTISLRIIVPGPLRLTKFDCSVN
Ga0005494J37277_103485	Ga0005494J37277_1034851	F088037	VLQSSTCIAVLPGADISKGLSLASRDFLFPGCLEKVNAPGCFLQRPAEISLKPVPPTASPLNPVCPGLGGILAMSPLPDFVSALLAATVSPLPSRDFYIPLRIAAFDAACHLKAYLLELPDFPSLPAGLPLLTSGRRIIVPGPLLLTRFVCSV
Ga0005494J37277_104527	Ga0005494J37277_1045271	F048323	FDSLTGITKSESGESSEELKITGKPELHKNESSKEMKKRVN*
Ga0005494J37277_105335	Ga0005494J37277_1053351	F001273	MRIDLYTKTILTIIALLLAIIVMKPLFQPQPALAEGKYAGVQFSYSGGNHAFFDARTGDVWEYGEDGHFRQHHKVHEFGKDHDH*
Ga0005494J37277_105525	Ga0005494J37277_1055251	F035144	MFTLAAAPCTPGTLASYIALGSTGCTVGNDTFFNFQLINDNASGGATMVTAADINVQGMGPAGTMGASSQNSFLPQDIGVDFDTALWAVTAGQSQDDDISFDVSVGTGAVDITDAGVDQISNTVPNGTASVTEKGCSGLVFPCASTWGVDTNDSTFVSDTIFSATGTLSVEKDIALVGGTGSAGLSNVADVFSTSEVPEPRALSFLLGLGLVAGFVFRKKFQGENA*
Ga0005494J37277_105634	Ga0005494J37277_1056341	F091420	EQSSRVERSETGTMIRRLITKSEWQAGSEGKSGGSHGELFSGTLN*
Ga0005494J37277_105634	Ga0005494J37277_1056342	F078329	MPAPNRTEQQASLKALKRFSRKQKGGELRGRRLAVLIAEAPTGHAGGGRGCEADHLE
Ga0005494J37277_105944	Ga0005494J37277_1059441	F023505	LDVGGGRKKAASFPEIIPGDWAKVGSGWLAQPLEDRFARSGNRRHNSPVPLSAFARRQ*
Ga0005494J37277_111372	Ga0005494J37277_1113721	F001357	MKKILLLAVLALALPMAVFAGTSVDYTNSGGTLSGSSAGLSLSGSVLIAANGLNGGGLITGSNLGSVSFTTGALLSGNLQMGGTFGAGGSFTVTGNGTDGIPNGVLFTGTFSSPVSWTLVTLANGTHNYTLIGTLTGTTGGSSVVTQGVT

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

3300002656: Forest soil microbial communities from Harvard Forest Long Term Ecological Research site in Petersham, Massachusetts, USA - MetaT HF143 (Metagenome Metatranscriptome, Counting Only)

Overview

Ecosystem and Geography

Associated Families

Associated Scaffolds

Sequences