Sample 3300002655

Basic Information
IMG/M Taxon OID	3300002655 Open in IMG/M
GOLD Reference (Study \| Sequencing Project \| Analysis Project)	Gs0085736 \| Gp0056672 \| Ga0005476
Sample Name	Forest soil microbial communities from Harvard Forest Long Term Ecological Research site in Petersham, Massachusetts, USA - MetaT HF125 (Metagenome Metatranscriptome, Counting Only)
Sequencing Status	Permanent Draft
Sequencing Center	DOE Joint Genome Institute (JGI)
Published?	N
Use Policy	Open

Basic Information

IMG/M Taxon OID

GOLD Reference
(Study | Sequencing Project | Analysis Project)

Sample Name

Forest soil microbial communities from Harvard Forest Long Term Ecological Research site in Petersham, Massachusetts, USA - MetaT HF125 (Metagenome Metatranscriptome, Counting Only)

Sequencing Status

Permanent Draft

Sequencing Center

DOE Joint Genome Institute (JGI)

Published?

Use Policy

Open

Dataset Contents
Total Genome Size	6553649
Sequencing Scaffolds	31
Novel Protein Genes	34
Associated Families	31

Dataset Contents

Total Genome Size

6553649

Sequencing Scaffolds

Novel Protein Genes

Associated Families

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
Not Available	26
All Organisms → cellular organisms → Eukaryota	1
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Basidiomycota → Agaricomycotina → Agaricomycetes → Agaricomycetes incertae sedis → Polyporales → Fibroporiaceae → Fibroporia → Fibroporia radiculosa	1
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Basidiomycota → Agaricomycotina → Agaricomycetes → Agaricomycetes incertae sedis → Cantharellales → Ceratobasidiaceae → Rhizoctonia → Rhizoctonia solani	2
All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1

Dataset Phylogeny

Taxonomy Groups

Number of Scaffolds

Not Available

All Organisms → cellular organisms → Eukaryota

All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Basidiomycota → Agaricomycotina → Agaricomycetes → Agaricomycetes incertae sedis → Polyporales → Fibroporiaceae → Fibroporia → Fibroporia radiculosa

All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Basidiomycota → Agaricomycotina → Agaricomycetes → Agaricomycetes incertae sedis → Cantharellales → Ceratobasidiaceae → Rhizoctonia → Rhizoctonia solani

All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium

Ecosystem Assignment (GOLD)
Name	Forest Soil Microbial Communities From Harvard Forest Long Term Ecological Research (Lter) Site In Petersham, Ma, For Long-Term Soil Warming Studies
Type	Environmental
Taxonomy	Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil → Forest Soil Microbial Communities From Harvard Forest Long Term Ecological Research (Lter) Site In Petersham, Ma, For Long-Term Soil Warming Studies

Ecosystem Assignment (GOLD)

Name

Forest Soil Microbial Communities From Harvard Forest Long Term Ecological Research (Lter) Site In Petersham, Ma, For Long-Term Soil Warming Studies

Type

Environmental

Taxonomy

Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil → Forest Soil Microbial Communities From Harvard Forest Long Term Ecological Research (Lter) Site In Petersham, Ma, For Long-Term Soil Warming Studies

Alternative Ecosystem Assignments
Environment Ontology (ENVO)	forest biome → solid layer → forest soil
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline)

Alternative Ecosystem Assignments

Environment Ontology (ENVO)

forest biome → solid layer → forest soil

Earth Microbiome Project Ontology (EMPO)

Free-living → Non-saline → Soil (non-saline)

Location Information
Location	Harvard Forest LTER, Petersham, MA, USA
Coordinates	Lat. (^o)	42.471116	Long. (^o)	-72.17263	Alt. (m)	N/A	Depth (m)	0 to .1
Location on Map

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Location Information

Location

Harvard Forest LTER, Petersham, MA, USA

Coordinates

Lat. (^o)

42.471116

Long. (^o)

-72.17263

Alt. (m)

N/A

Depth (m)

0 to .1

Location on Map

Zoom:

Family	Category	Number of Sequences	3D Structure?
F001758	Metagenome / Metatranscriptome	640	Y
F003383	Metagenome / Metatranscriptome	490	Y
F006338	Metagenome / Metatranscriptome	375	Y
F010404	Metagenome / Metatranscriptome	304	Y
F011566	Metagenome / Metatranscriptome	289	Y
F016413	Metagenome / Metatranscriptome	247	Y
F016972	Metagenome / Metatranscriptome	243	Y
F019794	Metagenome / Metatranscriptome	227	N
F024050	Metagenome / Metatranscriptome	207	Y
F024561	Metagenome / Metatranscriptome	205	Y
F027523	Metagenome / Metatranscriptome	194	N
F030627	Metagenome / Metatranscriptome	184	Y
F034933	Metagenome / Metatranscriptome	173	Y
F038248	Metagenome / Metatranscriptome	166	Y
F050386	Metagenome / Metatranscriptome	145	Y
F056191	Metagenome / Metatranscriptome	138	Y
F057922	Metagenome / Metatranscriptome	135	N
F058585	Metagenome / Metatranscriptome	134	N
F059015	Metagenome / Metatranscriptome	134	Y
F059538	Metagenome / Metatranscriptome	133	N
F067295	Metagenome / Metatranscriptome	125	N
F076112	Metagenome / Metatranscriptome	118	Y
F076700	Metagenome / Metatranscriptome	117	N
F078064	Metagenome / Metatranscriptome	116	N
F080954	Metagenome / Metatranscriptome	114	Y
F081691	Metagenome / Metatranscriptome	114	N
F088337	Metagenome / Metatranscriptome	109	N
F089697	Metagenome / Metatranscriptome	108	N
F093040	Metagenome / Metatranscriptome	106	N
F094972	Metagenome / Metatranscriptome	105	Y
F104202	Metagenome / Metatranscriptome	100	N

Family

Scaffold	Taxonomy	Length	IMG/M Link
Ga0005476J37264_100027	Not Available	512	Open in IMG/M
Ga0005476J37264_100108	All Organisms → cellular organisms → Eukaryota	745	Open in IMG/M
Ga0005476J37264_100214	Not Available	593	Open in IMG/M
Ga0005476J37264_100216	Not Available	537	Open in IMG/M
Ga0005476J37264_100221	Not Available	593	Open in IMG/M
Ga0005476J37264_100442	Not Available	714	Open in IMG/M
Ga0005476J37264_100912	Not Available	563	Open in IMG/M
Ga0005476J37264_100952	Not Available	801	Open in IMG/M
Ga0005476J37264_101011	Not Available	591	Open in IMG/M
Ga0005476J37264_101242	Not Available	522	Open in IMG/M
Ga0005476J37264_101352	Not Available	807	Open in IMG/M
Ga0005476J37264_101364	Not Available	548	Open in IMG/M
Ga0005476J37264_101738	Not Available	781	Open in IMG/M
Ga0005476J37264_101936	Not Available	2316	Open in IMG/M
Ga0005476J37264_102375	Not Available	629	Open in IMG/M
Ga0005476J37264_102493	Not Available	598	Open in IMG/M
Ga0005476J37264_103200	Not Available	856	Open in IMG/M
Ga0005476J37264_103245	Not Available	952	Open in IMG/M
Ga0005476J37264_103272	Not Available	764	Open in IMG/M
Ga0005476J37264_103290	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Basidiomycota → Agaricomycotina → Agaricomycetes → Agaricomycetes incertae sedis → Polyporales → Fibroporiaceae → Fibroporia → Fibroporia radiculosa	1289	Open in IMG/M
Ga0005476J37264_103392	Not Available	569	Open in IMG/M
Ga0005476J37264_103827	Not Available	623	Open in IMG/M
Ga0005476J37264_104324	Not Available	644	Open in IMG/M
Ga0005476J37264_104710	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Basidiomycota → Agaricomycotina → Agaricomycetes → Agaricomycetes incertae sedis → Cantharellales → Ceratobasidiaceae → Rhizoctonia → Rhizoctonia solani	1998	Open in IMG/M
Ga0005476J37264_104773	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Basidiomycota → Agaricomycotina → Agaricomycetes → Agaricomycetes incertae sedis → Cantharellales → Ceratobasidiaceae → Rhizoctonia → Rhizoctonia solani	1692	Open in IMG/M
Ga0005476J37264_104920	Not Available	502	Open in IMG/M
Ga0005476J37264_105108	Not Available	752	Open in IMG/M
Ga0005476J37264_105212	Not Available	579	Open in IMG/M
Ga0005476J37264_106961	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	680	Open in IMG/M
Ga0005476J37264_110842	Not Available	553	Open in IMG/M
Ga0005476J37264_111525	Not Available	522	Open in IMG/M

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0005476J37264_100027	Ga0005476J37264_1000271	F057922	VPSDPANSPFSDWHAQSEHSMQCSDAVLLLPVAAFIRPRISAPEPICLFYLLEARVSKQTLARPHRLLPFESHRSEVNAPALSLRRNSELFFQPVRPTPILVCVLTPPGYVRRPKPVAVFQAQSSQTSIQLPLPFRTFILPDRSAQSVARSEKLAFVSGPFSLRSPQA
Ga0005476J37264_100108	Ga0005476J37264_1001081	F056191	VYEARFRHELTAEMSKTLSSWGSMHASVKLEGIDGRAPQERVEHVA*
Ga0005476J37264_100214	Ga0005476J37264_1002141	F010404	MQPFTLLQRRFALRQIPAAGSTLLAYIFKAALEFQLARSASRSRPRLAFFRLTGLDHCESPVANFLS*
Ga0005476J37264_100216	Ga0005476J37264_1002161	F076700	SSLAVQPVLRPPATPVAALQLSLVLGSSGCAGTVVLTCVSALHSGSTSGQPSGSDRFRVLRLDRLQTSDSHRLFRSSARPLAIYQACARSWFHRACAQQSWFHLARAAWPFLRLGRQPTSDSHRCRSSARLAASSGLRLMLPLPLVWLRVQFAPVASPYAFTGREPLGLRLVAPSP
Ga0005476J37264_100221	Ga0005476J37264_1002211	F011566	GSKPDFQPCSPPACTVLNIAIGSAGRFASLLPDNRFRRLPDQCFKTRRRLLSRSGPDARSDLSLARNGCSFRSLHSEVNAPGLPLRFQLAASAARSALLLRYPNRLAPVLGGFVASGPLQSPRLARRPRLQPPLPLGTLTSRRIKAFCWICCLSARLPNPPDFPSLPAAGFYL
Ga0005476J37264_100442	Ga0005476J37264_1004421	F078064	RGIAGCARDCKSRRKSKVVKLADPEDARTGGYGILIDGLPAMQGSVEVRGASKAQPEVEAHGASRVIRNR*
Ga0005476J37264_100442	Ga0005476J37264_1004422	F059538	GVSMLGDRVVQPLLRPSATPAVRLQLSLPLLPLAAPVSNLRLASAALPPARPRANPPARIGVVSPGSVSGKCSAFAAYYALLIDWLLTFQLALVSGLQLGLRLLPTHIWRCPSARLVFQLPVLTGCRCNN*
Ga0005476J37264_100912	Ga0005476J37264_1009121	F001758	VTGEKSGQAGWPDSSKEKPQGGLAEAEFTSSSGSVRALSVNAKKGLSD*
Ga0005476J37264_100952	Ga0005476J37264_1009521	F067295	TVEARRSENPAESTTEIIPGDRGMEGGSWCRPPLLGGNSRKGTITSSSGRCHDRSSNMNQELRGEARTRNRGRAQSGNRDVSTRRPDAVTQRVYGCYCADQNAKXNPGGRRKPIPPPEGPGRPKAARARKGDVDAGSERDRQIP*
Ga0005476J37264_101011	Ga0005476J37264_1010112	F027523	FQVTKVTARSPTGMLQSELSEVESPSIPPLLRATAFRPSRLDA*
Ga0005476J37264_101242	Ga0005476J37264_1012421	F058585	LDHSQYSRCCVLRLPQWPPSSFRWRCYHWLRWLSELRLASGRCTPARPVANLPARIGFVSFGSTGCKPSTCVDCSALPLVLRRSIWLAPDDPGLIGLAPDNPGSTRLAPHGPFLRLGRQPTSDSHRCRPLARLAASSGLRLMLPLPLGWLRFQFAPAASPSAFTGREPLGLRL
Ga0005476J37264_101352	Ga0005476J37264_1013521	F034933	MTGRESQAMSAEQSVGKAGREVEGAEQSEPEAEGQVSRTK*
Ga0005476J37264_101364	Ga0005476J37264_1013641	F003383	MRRRVAPLSRSSSSARVASPGCPVPAPFLLSRRSNPQVAPWFRAFGCAGDGRSSYPERRMPLALPVQRGPELPRLLAFSCLACDEGLGLPLALHLRLYRRWLIESPRCSHHSAVPTYRSSSFPKSQPFGIADDSLFELPRTLNPPVPIDGYPSYLGSRTIR
Ga0005476J37264_101738	Ga0005476J37264_1017382	F024561	VAPGQRIAKSDGRPGANGADADTESQTCLHLVRELASANVSPSELRGLTRRFSRRKALDGPAMRPKIPLAVENGVGKLAAPRGRA*
Ga0005476J37264_101936	Ga0005476J37264_1019361	F050386	LRGSRKSYQWKRISEVHKLMIDIQTAHAKLGSQDGNSREHEIKVPNDY*
Ga0005476J37264_102192	Ga0005476J37264_1021921	F019794	LDESVVQPVLRPPATPETSLQLALPLPPLAAPASNLRLASAALRPARPGANPPARIGVLSFGSTGGKRRAFAVCIALPFVRWLTFQLALASFLRLGRRPTADSHLVLILQLGSCPTSGSHRLLLQPSACASCCYDSPACAGCRPFAIPAANFRLASAVTPSSFTGFDSPDLRRMFLPPAGPLVHPLLQPNLASPAEPSMSIQSPPVLAPSGSASFNNL
Ga0005476J37264_102200	Ga0005476J37264_1022001	F059015	SRVHGTIQRPVCMRTFALRPSVPGRTAKCSPSPPFRHAMGHSFSRPQPAPSSDSHSTGTGISIRPFARSQRRFRHHCEVYVPGLHLRFHIENLGESVRFRALPLRSVSRPNRGDVNARNPLLAPIFHVPDLSPISTPLQVLFRKPSGSKRSTGSISGSPSP*TPDSFLALRHVLLRFCYVLLAPVSRLETRCVQLDISF
Ga0005476J37264_102375	Ga0005476J37264_1023751	F038248	LCLPACLQLAPSTCLQALPSDLPLACAADPSSGSAFQLNFRLSIGYCIFQLRLFERMSDSRRTLRSVALPSSLLSACAFCRPSSFTVRLTVDLRRPSFFRICLPSNFRLSSKSDSQRSFRLTADSRRRSFFRPAFEPVSDFRRISHSWTSPSDSSPACASYQSSKLCLPTDPWLPPPICLPALPSCLPPTCAGCLPSSSALESTSDFLR
Ga0005476J37264_102493	Ga0005476J37264_1024931	F030627	SFADKIILWREGSFPFKATGPRSESRLRYVGRYAVSDRFCGDLLPARARLGPLSVRRFLRIASGRRLCGGSFRRRNHPTGWHGGFPTGRPWVFAAERRKALPNGEDRPDHPALPFPGPVPRIGLASSAVTGSFSLPWVQCSSIEGLSPRDPDTSLAATLTPIAHPAF*
Ga0005476J37264_103200	Ga0005476J37264_1032001	F093040	MFTTAMRLAEAEGVKHALGVHHPKTGTDRKGPGLPTNPDLSPVTRDYPRRSYVDRNPLARQPLHSTFR
Ga0005476J37264_103245	Ga0005476J37264_1032452	F088337	DGLVACRIMHRPIRPLDEDSSCLASCIFRLGQQCASGLPRTTHSLTAPATKFRVAPILQSIRLCRRQIFELPRISRPSAVPVMKPRVAPIFRCSGITFDESPSCPEHCIFRLYRRWIFELPRISHPSALLVVESPSFPGLPPSCLASDKFSGLPRFPHLPAPAGCSPSFLGLHPPVSPAVNFQVAPNLLSSG*
Ga0005476J37264_103272	Ga0005476J37264_1032721	F080954	RSDLERTFPATQEDEDSIEVGDSPRGASRGMQDSREVGTPVPGTAGDAKFGDSRSFVAG*
Ga0005476J37264_103290	Ga0005476J37264_1032902	F016972	VRLTPLTDEIPVVNLYLTINGADRVSFGAKTSRYGPYELGYRRATKTFTK*
Ga0005476J37264_103392	Ga0005476J37264_1033921	F089697	TRSSAGAASSGSPSGRPPAFAGAATSGCAGFQNSDLRRCPALQLDRWPTIRLGSVSCPSARPAANLRFASGVPLFRSTFGDPSSLRLTILASSGLRPTILVPSGLRRMALPPARPTTYLRFASMPFFSSAGGFIWLAPYAAPAPRLAPRPVCTGCFTLRLHRPTSRLAPRGSFSGASDALLVSNRTL
Ga0005476J37264_103827	Ga0005476J37264_1038271	F104202	SK*PSRSSTFPGQHAQPELGSLAGRDPNPSTLSKRVFIPLEMHGVTTACVRRDPAILPSQSLTLGCGLSLACNDCAPCGCLRGRVTVPGLPLCIFPGLPQCPFGSKAPRTGILSDSATDLHPQTRYTSLHSGLPHRLTVLSPLRDFAGFPSRLIPWAQRARPLNHTGNSPWYSARFSFPPQRLFYCGCHWIIVRDPLLFTRLAVPSN
Ga0005476J37264_104324	Ga0005476J37264_1043242	F024050	LGFGPSAVPAMDVRVAPNFAFLRRCRFQPGSESPRCLLPSSSAPDVGLGFPLVLHLRLYRRWIIESPRFSHLSAVPSCQSSSCPEPQPFGIADDSPPRLPQTSNPPAPIDGYPSYLGSRTIRFALVEAPSYPGSSPSATAIDQFPGCPKSWVSHRSPIHHASSCPESWFLG*
Ga0005476J37264_104710	Ga0005476J37264_1047103	F016972	VRLTPLTDEIPVVNLYLTINEFYIFSFGAKTSRYGPHELGYRRATKTFTK*
Ga0005476J37264_104773	Ga0005476J37264_1047731	F016972	VRLNPLTDAIPIVNLILNNENIDKIFVGAKTSHYGPNELGYRRAIKTLTK*
Ga0005476J37264_104920	Ga0005476J37264_1049201	F094972	MNPLPDSVPAFLADTEPPLPFRDFYIPLQIAAFDSAFRSKAHLYELPDSPSLPVSFMLLTISLRIIVPGPLRLTKFDCS
Ga0005476J37264_105108	Ga0005476J37264_1051082	F016972	VRLTPLTDEIPAINLYLIVNDIYKISLGAKTSRYGPHGLGYRRATKTFTK*
Ga0005476J37264_105212	Ga0005476J37264_1052121	F076112	VRALIEIAEFLPRNGLAAAISPNPGLTGKSEGAIGRTGLARIQQRIEAAGWELRSRDGGLETGSRCGGAKSRCEMPVPAGANAGALQGVNPSLSKGVAGS*
Ga0005476J37264_106961	Ga0005476J37264_1069612	F016413	TPHVDPVMKLASTNKTVAGHDPATETIFLSHRHASFLTKMSDEINPAMPKAFGWPHAIRTIIDRIEESKIDLTVASSEYEIAQLAAGELRAKGRRRTASR*
Ga0005476J37264_110842	Ga0005476J37264_1108421	F081691	MRIRSIRGLSVLTASVAVSAALGLAGATAASASTHVKPHATTVCNNSSMPCTNISSLLLNQNNGPAFIQNATTKGVSSGSLYKGRIVNLRQASDTRTNEDFIIRFVGFTDQLCGSGGVNS
Ga0005476J37264_111525	Ga0005476J37264_1115252	F006338	VVLENGMLSGPATRPKTPLAVANSVGKLAAAEMWRQMPAREREPGELP

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

3300002655: Forest soil microbial communities from Harvard Forest Long Term Ecological Research site in Petersham, Massachusetts, USA - MetaT HF125 (Metagenome Metatranscriptome, Counting Only)

Overview

Ecosystem and Geography

Associated Families

Associated Scaffolds

Sequences