Sample 3300002528

Basic Information
IMG/M Taxon OID	3300002528 Open in IMG/M
GOLD Reference (Study \| Sequencing Project \| Analysis Project)	Gs0099548 \| Gp0055156 \| Ga0005345
Sample Name	Marine microbial communities from oxygen minimum zone in mesopelagic equatorial Pacific - METZYME_3_800m
Sequencing Status	Permanent Draft
Sequencing Center	DOE Joint Genome Institute (JGI)
Published?	N
Use Policy	Open

Basic Information

IMG/M Taxon OID

3300002528 Open in IMG/M

GOLD Reference
(Study | Sequencing Project | Analysis Project)

Gs0099548 | Gp0055156 | Ga0005345

Sample Name

Marine microbial communities from oxygen minimum zone in mesopelagic equatorial Pacific - METZYME_3_800m

Sequencing Status

Permanent Draft

Sequencing Center

DOE Joint Genome Institute (JGI)

Published?

Use Policy

Open

Dataset Contents
Total Genome Size	166925968
Sequencing Scaffolds	36
Novel Protein Genes	39
Associated Families	34

Dataset Contents

Total Genome Size

166925968

Sequencing Scaffolds

Novel Protein Genes

Associated Families

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
Not Available	21
All Organisms → cellular organisms → Bacteria	4
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	1
All Organisms → cellular organisms → Archaea → Euryarchaeota	3
All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Verrucomicrobiae → Verrucomicrobiales → unclassified Verrucomicrobiales → Verrucomicrobiales bacterium	1
All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Deltaproteobacteria incertae sedis → SAR324 cluster → SAR324 cluster bacterium	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Bacilli → Bacillales → Bacillaceae → Bacillus	1
All Organisms → cellular organisms → Bacteria → FCB group → Candidatus Marinimicrobia → Candidatus Marinimicrobia bacterium	1
All Organisms → cellular organisms → Archaea	1

Dataset Phylogeny

Taxonomy Groups

Number of Scaffolds

Not Available

All Organisms → cellular organisms → Bacteria

All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia

All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria

All Organisms → cellular organisms → Archaea → Euryarchaeota

All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Verrucomicrobiae → Verrucomicrobiales → unclassified Verrucomicrobiales → Verrucomicrobiales bacterium

All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota

All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Deltaproteobacteria incertae sedis → SAR324 cluster → SAR324 cluster bacterium

All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Bacilli → Bacillales → Bacillaceae → Bacillus

All Organisms → cellular organisms → Bacteria → FCB group → Candidatus Marinimicrobia → Candidatus Marinimicrobia bacterium

All Organisms → cellular organisms → Archaea

Ecosystem Assignment (GOLD)
Name	Marine Microbial Communities From Oxygen Minimum Zone In The Mesopelagic Equatorial Pacific
Type	Environmental
Taxonomy	Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From Oxygen Minimum Zone In The Mesopelagic Equatorial Pacific

Ecosystem Assignment (GOLD)

Name

Marine Microbial Communities From Oxygen Minimum Zone In The Mesopelagic Equatorial Pacific

Type

Environmental

Taxonomy

Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From Oxygen Minimum Zone In The Mesopelagic Equatorial Pacific

Alternative Ecosystem Assignments
Environment Ontology (ENVO)	oceanic mesopelagic zone biome → marine mesopelagic zone → sea water
Earth Microbiome Project Ontology (EMPO)	Free-living → Saline → Water (saline)

Alternative Ecosystem Assignments

Environment Ontology (ENVO)

oceanic mesopelagic zone biome → marine mesopelagic zone → sea water

Earth Microbiome Project Ontology (EMPO)

Free-living → Saline → Water (saline)

Location Information
Location	Pacific Ocean
Coordinates	Lat. (^o)	8.0	Long. (^o)	-156.0	Alt. (m)	N/A	Depth (m)	800
Location on Map

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Location Information

Location

Pacific Ocean

Coordinates

Lat. (^o)

8.0

Long. (^o)

-156.0

Alt. (m)

N/A

Depth (m)

800

Location on Map

Zoom:

Family	Category	Number of Sequences	3D Structure?
F000423	Metagenome / Metatranscriptome	1156	Y
F005684	Metagenome / Metatranscriptome	393	Y
F008912	Metagenome / Metatranscriptome	326	Y
F011446	Metagenome / Metatranscriptome	291	Y
F013190	Metagenome / Metatranscriptome	273	Y
F015260	Metagenome / Metatranscriptome	256	Y
F020717	Metagenome / Metatranscriptome	222	Y
F020787	Metagenome / Metatranscriptome	222	N
F021319	Metagenome	219	N
F024128	Metagenome	207	Y
F025382	Metagenome / Metatranscriptome	202	Y
F025588	Metagenome / Metatranscriptome	201	N
F026708	Metagenome / Metatranscriptome	197	Y
F027203	Metagenome	195	Y
F029783	Metagenome	187	N
F034336	Metagenome / Metatranscriptome	175	N
F037771	Metagenome / Metatranscriptome	167	N
F042386	Metagenome / Metatranscriptome	158	N
F047119	Metagenome / Metatranscriptome	150	N
F047303	Metagenome	150	Y
F049215	Metagenome / Metatranscriptome	147	N
F062154	Metagenome / Metatranscriptome	131	N
F063768	Metagenome / Metatranscriptome	129	N
F066848	Metagenome / Metatranscriptome	126	N
F080484	Metagenome	115	N
F086145	Metagenome / Metatranscriptome	111	N
F090504	Metagenome	108	N
F092215	Metagenome / Metatranscriptome	107	N
F097500	Metagenome / Metatranscriptome	104	N
F097507	Metagenome	104	N
F099429	Metagenome / Metatranscriptome	103	Y
F099438	Metagenome / Metatranscriptome	103	N
F099440	Metagenome / Metatranscriptome	103	N
F103388	Metagenome / Metatranscriptome	101	Y

Family

Scaffold	Taxonomy	Length	IMG/M Link
JGI24819J35694_1000206	Not Available	13080	Open in IMG/M
JGI24819J35694_1000255	All Organisms → cellular organisms → Bacteria	11833	Open in IMG/M
JGI24819J35694_1000969	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	7124	Open in IMG/M
JGI24819J35694_1004497	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	3435	Open in IMG/M
JGI24819J35694_1006525	Not Available	2797	Open in IMG/M
JGI24819J35694_1010111	All Organisms → cellular organisms → Bacteria	2146	Open in IMG/M
JGI24819J35694_1011314	All Organisms → cellular organisms → Bacteria	2004	Open in IMG/M
JGI24819J35694_1012192	All Organisms → cellular organisms → Archaea → Euryarchaeota	1907	Open in IMG/M
JGI24819J35694_1012402	Not Available	1887	Open in IMG/M
JGI24819J35694_1013618	Not Available	1774	Open in IMG/M
JGI24819J35694_1013718	Not Available	1765	Open in IMG/M
JGI24819J35694_1015652	All Organisms → cellular organisms → Archaea → Euryarchaeota	1610	Open in IMG/M
JGI24819J35694_1019195	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Verrucomicrobiae → Verrucomicrobiales → unclassified Verrucomicrobiales → Verrucomicrobiales bacterium	1386	Open in IMG/M
JGI24819J35694_1021011	All Organisms → cellular organisms → Archaea → Euryarchaeota	1296	Open in IMG/M
JGI24819J35694_1021124	All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota	1291	Open in IMG/M
JGI24819J35694_1022495	Not Available	1234	Open in IMG/M
JGI24819J35694_1028833	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Deltaproteobacteria incertae sedis → SAR324 cluster → SAR324 cluster bacterium	1032	Open in IMG/M
JGI24819J35694_1029188	Not Available	1023	Open in IMG/M
JGI24819J35694_1030861	Not Available	984	Open in IMG/M
JGI24819J35694_1035071	Not Available	900	Open in IMG/M
JGI24819J35694_1036230	Not Available	879	Open in IMG/M
JGI24819J35694_1037454	Not Available	858	Open in IMG/M
JGI24819J35694_1037886	Not Available	851	Open in IMG/M
JGI24819J35694_1040287	Not Available	814	Open in IMG/M
JGI24819J35694_1045484	All Organisms → cellular organisms → Bacteria	747	Open in IMG/M
JGI24819J35694_1051033	Not Available	689	Open in IMG/M
JGI24819J35694_1053060	Not Available	670	Open in IMG/M
JGI24819J35694_1053271	Not Available	668	Open in IMG/M
JGI24819J35694_1053779	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Bacilli → Bacillales → Bacillaceae → Bacillus	664	Open in IMG/M
JGI24819J35694_1058805	All Organisms → cellular organisms → Bacteria → FCB group → Candidatus Marinimicrobia → Candidatus Marinimicrobia bacterium	625	Open in IMG/M
JGI24819J35694_1060426	All Organisms → cellular organisms → Archaea	613	Open in IMG/M
JGI24819J35694_1060607	Not Available	612	Open in IMG/M
JGI24819J35694_1064598	Not Available	587	Open in IMG/M
JGI24819J35694_1071652	Not Available	547	Open in IMG/M
JGI24819J35694_1076718	Not Available	522	Open in IMG/M
JGI24819J35694_1080365	Not Available	506	Open in IMG/M

Sequences

Scaffold ID	Protein ID	Family	Sequence
JGI24819J35694_1000206	JGI24819J35694_10002066	F024128	MKEKKLNIDHSESASTLSDNLKYINNTVSHLEINRFQGVKDIMFQVVCKALTINVVTGKKAFVVWAVQEQDSMEEAVQMAKDELRNRIVMGAPVLQYAGPEEDIHNLVEYK*
JGI24819J35694_1000255	JGI24819J35694_10002557	F092215	MSAFWMSQTPNDIALAETFHHSEDISGVRQGAGLIQLTETHYAPFVDDDYCPLAGPALLVPKVIRLADLALGMEVGQLGIGKATERCAPSTVGRNCVAAYAQDLSITILEPLVFLSERGRLSGSTRGEVEYVERENNYFLALVVGQGNVPIGGGKFEIGGYIANFCRHIPAFIK*
JGI24819J35694_1000969	JGI24819J35694_10009692	F063768	MGDGRVSDPVTTVEGAGEFIVLAELSTALSGRLAGWSTDGADPDTSATMASLAARLGEHAGWWMDRTPESALLEGERTAASGAGRLTDILALLDVPPSDRRSAVAPVLDRLVAYLGVLSERLSPVGDAPALRTIRLVLADLEXRPR*
JGI24819J35694_1004497	JGI24819J35694_10044976	F097500	MNRLEAVIEKEKEIFYSQRDKDLFRSHILILIHQEQESKKFKRKLCLALFLGIGTLSLLFSRISEIANDFTVGLSDAITGDVLTIANDFTVGLSDAITGDILTTVVFSYGLLFALLALLKKPDFIFN*
JGI24819J35694_1006525	JGI24819J35694_10065251	F097507	MKYCVVVAEKMHKKEKLGVINWSDEWDKPCLIEQVQMRIDTGWIPIGGVSYGEHEAFSEKVWAQSMSKEEDSEEE*
JGI24819J35694_1010111	JGI24819J35694_10101114	F008912	VKNLVVTLGITGCGKSTWLKDKSPVIETDDLRVELLDDISNVTQEGFIFGTAAKRISKLFDTHDTVYFGATLVDSKRRIPFLQSIKXMCKHKFVIDMIIXPXIPELSKERIAKALKDGMQRADSIQFVDEQYEQYLHTMSILDDEKDFYRMIKSDTHIVG*
JGI24819J35694_1011314	JGI24819J35694_10113142	F086145	MRRIVCKAYAGYWEGIFYTQAASRGYLKLLVFFLIWQKKTTVSLKIPIIVRV*
JGI24819J35694_1012192	JGI24819J35694_10121922	F005684	VYDTEESPLSLMQVVRRKSEVREGRLCNRNEPRQAHCEPERGRFPDRGWNEHPHRSKSKQVRMASTGPGRMHS*
JGI24819J35694_1012402	JGI24819J35694_10124021	F049215	VRWLLITCVAYLVSCTEPMEYVTRELTIWNKYVSNGYDNYDDEIEVNLKLGSRDWFWLYDSGDRVKIYNNSSFTWQFEFSEDFDSLYVHARFYYTKDLIIELVVADTALRMDSDKTLMFWNCGDTTVVEYPFPACFTEVDSL*
JGI24819J35694_1013618	JGI24819J35694_10136182	F099429	MTKYLLPLIPFLLGNSAGAMGAMVELFIIAAVGLAIIIGIIWGLIKWLS*
JGI24819J35694_1013618	JGI24819J35694_10136183	F029783	MGINKMVELTGDTADFLNEIPWFDGIIYIILLMGLYVFYKWVNKKFS*
JGI24819J35694_1013718	JGI24819J35694_10137182	F066848	MRFSTRSIHNLRHPQDDVYRAVKRFVGPGFAMGSTDLVLSIVLDGAGQIAANQRLAVDPVALAVGPDADADLVA*
JGI24819J35694_1015652	JGI24819J35694_10156521	F005684	VYDTEESPLSAMQVVRRKSEVREGRLCNRNEPRQAHCEPARGRFPDRGWNEHPRRSKSKQVRKASTGPGRTHS*
JGI24819J35694_1019195	JGI24819J35694_10191951	F062154	MQSRRNAVGANGVKVLSVVNARPEQLVNSVANGVRAPSVVNARPEQLVNSVANGVRVPSVVNVRPEQAVSVDRSPVAAVVREDQV
JGI24819J35694_1021011	JGI24819J35694_10210111	F097507	MKYAVVVAEKMHKKEEFGVINWPGWDKPCLIEQVQMRIDTGWAPLGGVSYGEHEAFSEKVWAQSMIKEEDSEEE*
JGI24819J35694_1021124	JGI24819J35694_10211244	F013190	SQLYFSNAELGQEISISATCDGSIPLNEMPSTVASKVASSTNVDIAEIMAFHSSEVFVLAENSNLIK*
JGI24819J35694_1022495	JGI24819J35694_10224952	F090504	MKVFVVVFVVLSLILSYWAGAIAKRKGKSFVLWCILQLLFYFPIILIAFHSPIEKKK*
JGI24819J35694_1028833	JGI24819J35694_10288331	F099440	MQLIILKYQVLNGVKLIDENGRKIMVCGLHNTGQEKNIENFSQWTCNLLASCI
JGI24819J35694_1029188	JGI24819J35694_10291883	F020717	MTRKQSEINGISIVAFTRFLALLETTQCWDFLRPHHILHENKDIRCCQDLNEQKDISISALKLMLSEN*
JGI24819J35694_1030861	JGI24819J35694_10308612	F090504	MMVVFLVLTIIIFGLILPYWAGVIAKRKGKSFVLWCILQLLFFFPIVLIAFHSPVEKEK*
JGI24819J35694_1035071	JGI24819J35694_10350711	F047119	MQTENEYFNLTMPDNERPISGFYRGWCSQYGTDFSWQGTYDQYTPLDVCPWCHGDHTCDVGRVVPLLDPEEIEHDLDENGHHPDEVNVYPGVPGDFRPVVYIYLDELPPDRSWADIIRNRQMRHITMRQHTTEVHFFARTRESMSWQLSDTRNVMTQSITNWLRFTDPSFAGVITFRTRDGQINRRY*
JGI24819J35694_1036230	JGI24819J35694_10362301	F024128	MVMITKKDAQEYLDKRGPASLSDNLKYINNSVSHLEINRFCGTKDTMGYQVVCKAITINVVTGKKSFVVWAVQEGYDDLEVIIQKAKDELKNRIVMGMPVLQHASPDEDVKNLVE
JGI24819J35694_1037454	JGI24819J35694_10374541	F099438	MKKFSIINRSIASFLAVIMFMTPVSSVFAQKAVDNREITVMAERDAKDDAEESGTFLWWCGGFLLTFVIPYVGGLPLALYGYYKGGEPDGVPAVRLMDLEKAYGKGNSEAISIYTAAYEKKYTEVARKRHGKAGLIGYGLGLLLAILAFAAIIAILTGASAEDDDFTNDAIDFHLGLMGLEKA*
JGI24819J35694_1037886	JGI24819J35694_10378863	F015260	VVFGASAPFTFFLMKWTKEQLTEASLILVKWKSSLAMIEKKFKDKGIRMPFGERMDFRKKYSPLKKKIDDMENEFLLNVAGNGIEGERDDSE
JGI24819J35694_1040287	JGI24819J35694_10402871	F037771	VVRTSGPDLVVFDGYRGRHDGDRTAAAGLKELLGCEDSTYWNNWSDRGDSLKRRFDRASEWLELRLGNITDVNVIGLSMGCQLAVRFVHHASIKAPSIEFGQLLLIAPDPKYRPVGRDAEEIAAGTSSAFEEAVALWGGRGLAGPRFVSGLADAANRMERTRIVYCRSDGVAEWSANVELMVDELPATTGIELIEAIDGEVVSTDDMTVDLGVGNPELDVHDRLWESISFV*
JGI24819J35694_1045484	JGI24819J35694_10454842	F034336	MKINVKVLSAFLLIVNLYAVENPEDVKPTIQNGKGLFVLLDDTSWICQIVAEAYILGTIDGIITRKRPLRALCGNKVDKALLTIPNGIEIERIISIVHQFLKDNPENLYKPSIALIRQ
JGI24819J35694_1051033	JGI24819J35694_10510332	F025588	MKTYDKFKKELTEDGMLHGEYGTENPSTTIHYGPNDPEIVRTASNTMTVPKYRLSEDGKGCNHTCAHWRDSSYCAEYYFKCDSTYTCDSWKDSGI*
JGI24819J35694_1051104	JGI24819J35694_10511042	F020787	MPKVRFEIYSTERGKKLIDLGELLVESGYLQSFDLDEEGTEVVFNFEVNAGFDVEKGEINMEELRSYFDAADDVGKKFTDELLRSVFDLDDTGHIWKS*
JGI24819J35694_1053060	JGI24819J35694_10530602	F042386	AGLPCNYQEGEKGQFELFHGSTPYLKEGDGVPKFFTLEDIERKLGGLGEY*
JGI24819J35694_1053271	JGI24819J35694_10532711	F080484	KDPNANNILDSFAGIFIALHLFDVYTQTKKYNRNLSMSIFGQKTPPPTLGTIFPLKTNYKHYFNFFGFPNHRTGIGMFGYSITKRTKKNNEYYMGIGTIIINLSITAGWKYYFKKSNADDYYLAMSLVGSTLEIDDRYDETKKVSKDFIAGNFSAGYEKRLSKNIYLNMEIFTLTGIMPNSEGITDGIRFLVAPSFHFNYRI*
JGI24819J35694_1053346	JGI24819J35694_10533462	F020787	MPKVRFEIYSTERGKKLIDLAELLVESGYLQSFDLDEEGTEVIFNFEMDVGFEVEKSEIDMKELRAYFDAADDVGKKFTDELLRSVFDLDDTGHIWKS
JGI24819J35694_1053779	JGI24819J35694_10537791	F021319	SPPPTPKRLDIIPAKKLAPAEKTSKIRDVSNGFLSIFLFRKMYDADAKRTSANKILKISGDRSEDMNAPSTVPGTAINPSFQPSENSXRFCLAYTAVDATELLNTANKLLLTASVGENPTNVNTGTIIIPPPRPIIEPNRPATNPSGMSQILSINVLG*
JGI24819J35694_1058805	JGI24819J35694_10588051	F103388	MSPTERAYVAGIIDGEGWVEFRRKAVKRNNRPGKPTHNVLIIRMEVPQVDGRLIDYLMTTTDEGNRDIKRYPTKPTYKDQH
JGI24819J35694_1060426	JGI24819J35694_10604261	F027203	TAPAPARYKRSKTSSDMPRMPEARMVGLSRVRVPIEVERLDFTLNSLILFSYNS*
JGI24819J35694_1060607	JGI24819J35694_10606071	F011446	MEAMILGWAQTQSWWGIATTVIVIANGITMTLRDKYAENIPVLGKIWPILNWLSLNIANNKNEEK*
JGI24819J35694_1064598	JGI24819J35694_10645981	F047303	MLLRLFHALIGAVLGAVFGAVGAFWHFGVFINWNLISICAGICGVLAFVWGEQFLDEFFNWWN*
JGI24819J35694_1071652	JGI24819J35694_10716522	F025382	MANVVVQAAAATPNVVKVTQPGIAASNIVQVTETRGTITLNAATDVDSSSAPNDSLLIWNANTSRYELRAFTDLPVDAGTM*
JGI24819J35694_1076718	JGI24819J35694_10767181	F000423	LMTSLSKSIFYIKYYAKKHECIIERKATLDDECFEGVHKKFGYPYKKYVDIQATEEVNNGKNQYRTASVKWEINDNPTLT*
JGI24819J35694_1080365	JGI24819J35694_10803652	F026708	FFFSNNKTNGVTTRKPTKNRTELKVNGPILSIPVSWAMNVVPQIKVQATKQTNDIVFFIS

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

3300002528: Marine microbial communities from oxygen minimum zone in mesopelagic equatorial Pacific - METZYME_3_800m

Overview

Ecosystem and Geography

Associated Families

Associated Scaffolds

Sequences