3300002525: Ammonia-oxidizing marine microbial communities from Monterey Bay, California, USA - C0912_C27A4_80

Overview

Basic Information

• IMG/M Taxon OID: 3300002525
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0099541 | Gp0056854 | Ga0023010
• Sample Name: Ammonia-oxidizing marine microbial communities from Monterey Bay, California, USA - C0912_C27A4_80
• Sequencing Status: Permanent Draft
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 27788098
• Sequencing Scaffolds: 10
• Novel Protein Genes: 10
• Associated Families: 10

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria → Proteobacteria	2
Not Available	6
All Organisms → cellular organisms → Archaea → Euryarchaeota	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Marine Archaeal Communities From Monterey Bay, Ca, That Are Ammonia-Oxidizing
• Type: Environmental
• Taxonomy: Environmental → Aquatic → Marine → Intertidal Zone → Unclassified → Marine → Marine Archaeal Communities From Monterey Bay, Ca, That Are Ammonia-Oxidizing

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): marine biome → intertidal zone → sea water
• Earth Microbiome Project Ontology (EMPO): Free-living → Saline → Water (saline)

Location Information

• Location: Monterey Bay, California, USA
• Coordinates
  • Lat. (^o): 36.25
  • Long. (^o): -122.2099
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001620	Metagenome / Metatranscriptome	662	Y
F005684	Metagenome / Metatranscriptome	393	Y
F008525	Metagenome / Metatranscriptome	332	Y
F011338	Metagenome / Metatranscriptome	292	N
F011529	Metagenome / Metatranscriptome	290	Y
F014267	Metagenome / Metatranscriptome	264	Y
F028833	Metagenome / Metatranscriptome	190	Y
F034891	Metagenome	173	Y
F070936	Metagenome / Metatranscriptome	122	Y
F072758	Metagenome	121	Y

Associated Scaffolds

Scaffold	Taxonomy	Length
JGI24926J35533_104257	All Organisms → cellular organisms → Bacteria → Proteobacteria	907
JGI24926J35533_104722	Not Available	854
JGI24926J35533_104749	All Organisms → cellular organisms → Archaea → Euryarchaeota	851
JGI24926J35533_105669	All Organisms → cellular organisms → Bacteria → Proteobacteria	770
JGI24926J35533_107301	Not Available	670
JGI24926J35533_108827	Not Available	604
JGI24926J35533_109222	Not Available	590
JGI24926J35533_110229	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	560
JGI24926J35533_110483	Not Available	553
JGI24926J35533_112158	Not Available	513

Sequences

Scaffold ID	Protein ID	Family	Sequence
JGI24926J35533_104257	JGI24926J35533_1042572	F070936	MAINVQAALQEMREAIELKEKWNEKMSIKGLGEFRKAYETLKKSGVDKRFVASMEKFYDDLVIGGMYSSRAAEDAGIVKIDGKTKYKNANW*
JGI24926J35533_104722	JGI24926J35533_1047222	F072758	MEELYREFEQLASKNEPLQCAGIMMAQALKIYKAALSEDEFKMITSKILESRDDIQMPDKPTLN*
JGI24926J35533_104749	JGI24926J35533_1047492	F005684	VYDTEESPLSNMRAVRFKPEVREGRLCNRNEPRQAYDDPVRVRFPDRGWNEQPRWSKSKQVRSALTGPGRMHS*
JGI24926J35533_105669	JGI24926J35533_1056692	F011529	MRWNKLTIDARGLKGIRLRSCKLWLDDTGFHPFLDPDEMIRPDMQKSMGVAFDELPKEAWDVMDRYDWEKAKRSKYATGN*
JGI24926J35533_107301	JGI24926J35533_1073011	F034891	MPKVGNKHYAYTAKGMAKAKAAAKKSGKKVSYGKRKRRT*
JGI24926J35533_108827	JGI24926J35533_1088271	F011338	ENEVGNLVVNFRNEGYTVRDVEVRNGFAYGGPRVKNLSDRAFTTFSANNAITLEGGAGDGEIILENESGVLQHPQSDSWSTTIADWNTLRFTGTLNSNVDGETMRLSDINGTKSSQNHRINFAFPTEVTKSA*
JGI24926J35533_109222	JGI24926J35533_1092222	F001620	MDATTLVTIITMFVVTNTSSEFIKYDGLMDCLKDKRAIEKKKDGRRAICGPSMAEIDADGNIVSIKNKMPDQSGSLKLGGTAKSLTEKKKKKQTEVLTQD*
JGI24926J35533_110229	JGI24926J35533_1102293	F028833	AKKVAEEPTDFQIAEQILDNVPQHVIDEERGDMIRMLRKEQAQREMYDDPYMNWSGHR*
JGI24926J35533_110483	JGI24926J35533_1104831	F014267	AFAIQNIVIHINNIHKVDGVNFVKPSDILAKLFEAIPNEIPTAKNKYPNRGFIF*
JGI24926J35533_112158	JGI24926J35533_1121582	F008525	MLTFKESFNEVIEAKLKLPSGEKVAKELTKLGKKKKTSAVITNKFNLYIDGIKLDKFKDLKSAEDGLKDFLNLMGA*