Sample 3300002502

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Sample 3300002502

3300002502: Soil microbial communities from Rifle, Colorado - Rifle CSP2_plank highO2_0.1

Overview

Basic Information
IMG/M Taxon OID	3300002502 Open in IMG/M
GOLD Reference (Study \| Sequencing Project \| Analysis Project)	Gs0053054 \| Gp0056900 \| Ga0005058
Sample Name	Soil microbial communities from Rifle, Colorado - Rifle CSP2_plank highO2_0.1
Sequencing Status	Permanent Draft
Sequencing Center	DOE Joint Genome Institute (JGI)
Published?	Y
Use Policy	Open

Dataset Contents
Total Genome Size	2117238325
Sequencing Scaffolds	21
Novel Protein Genes	21
Associated Families	11

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria	2
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	1
Not Available	6
All Organisms → cellular organisms → Archaea	7
All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Thaumarchaeota incertae sedis → Candidatus Nitrosotenuis → unclassified Candidatus Nitrosotenuis → Candidatus Nitrosotenuis sp.	1
All Organisms → cellular organisms → Archaea → DPANN group → Candidatus Woesearchaeota → Candidatus Woesearchaeota archaeon	1
All Organisms → cellular organisms → Archaea → DPANN group	1
All Organisms → cellular organisms → Archaea → Euryarchaeota	1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → unclassified Bacteroidetes → Bacteroidetes bacterium	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
Name	Soil Microbial Communities From Rifle, Colorado, Usa
Type	Environmental
Taxonomy	Environmental → Terrestrial → Soil → Loam → Unclassified → Soil → Soil Microbial Communities From Rifle, Colorado, Usa

Alternative Ecosystem Assignments
Environment Ontology (ENVO)	terrestrial biome → land → soil
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Subsurface (non-saline)

Location Information
Location	Rifle, Colorado, United States
Coordinates	Lat. (^o)	39.534762	Long. (^o)	-107.782602	Alt. (m)	N/A	Depth (m)	N/A
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F000409	Metagenome / Metatranscriptome	1171	Y
F004010	Metagenome / Metatranscriptome	457	Y
F013096	Metagenome / Metatranscriptome	274	Y
F021881	Metagenome / Metatranscriptome	217	Y
F033389	Metagenome / Metatranscriptome	177	Y
F065251	Metagenome / Metatranscriptome	128	Y
F080249	Metagenome / Metatranscriptome	115	Y
F091390	Metagenome	107	Y
F094578	Metagenome / Metatranscriptome	106	Y
F102416	Metagenome	101	N
F103989	Metagenome	101	N

Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
C687J35174_10006790	All Organisms → cellular organisms → Bacteria	14855	Open in IMG/M
C687J35174_10024253	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	6870	Open in IMG/M
C687J35174_10085302	Not Available	2965	Open in IMG/M
C687J35174_10146863	All Organisms → cellular organisms → Bacteria	2028	Open in IMG/M
C687J35174_10184097	All Organisms → cellular organisms → Archaea	1718	Open in IMG/M
C687J35174_10190813	All Organisms → cellular organisms → Archaea	1672	Open in IMG/M
C687J35174_10278855	Not Available	1249	Open in IMG/M
C687J35174_10289518	All Organisms → cellular organisms → Archaea	1214	Open in IMG/M
C687J35174_10292921	Not Available	1203	Open in IMG/M
C687J35174_10303214	Not Available	1172	Open in IMG/M
C687J35174_10312032	All Organisms → cellular organisms → Archaea	1147	Open in IMG/M
C687J35174_10318640	Not Available	1128	Open in IMG/M
C687J35174_10443518	All Organisms → cellular organisms → Archaea	877	Open in IMG/M
C687J35174_10478011	All Organisms → cellular organisms → Archaea	828	Open in IMG/M
C687J35174_10482511	All Organisms → cellular organisms → Archaea	822	Open in IMG/M
C687J35174_10610056	Not Available	690	Open in IMG/M
C687J35174_10727187	All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Thaumarchaeota incertae sedis → Candidatus Nitrosotenuis → unclassified Candidatus Nitrosotenuis → Candidatus Nitrosotenuis sp.	605	Open in IMG/M
C687J35174_10749208	All Organisms → cellular organisms → Archaea → DPANN group → Candidatus Woesearchaeota → Candidatus Woesearchaeota archaeon	592	Open in IMG/M
C687J35174_10783267	All Organisms → cellular organisms → Archaea → DPANN group	573	Open in IMG/M
C687J35174_10784585	All Organisms → cellular organisms → Archaea → Euryarchaeota	572	Open in IMG/M
C687J35174_10793266	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → unclassified Bacteroidetes → Bacteroidetes bacterium	568	Open in IMG/M

Sequences

Scaffold ID	Protein ID	Family	Sequence
C687J35174_10006790	C687J35174_1000679015	F000409	MMTNEEKIKAAARLLIRLHGSQAIAIAEIKAEHFLRAGDKLMYVVWCWIAESTAELLRPLPKAGERVH*
C687J35174_10024253	C687J35174_100242533	F094578	LGFRKQGLVKLGAKLGVNMEKEKPKWPFQRLKSMYFAMHCWKCRKCEDSPERYKQKCEDNIQKIIDNLEIKEMTFKEFNNIIKNTSFCKFEKRDFSNNCPICKNLGISNHF*
C687J35174_10085302	C687J35174_100853026	F004010	KHKIMPLGSNVSANMRELYKDNRKKGKARGANGKPRSRKQMIAIAINAANKATGRKRKK*
C687J35174_10146863	C687J35174_101468632	F021881	MHQKNTKASLVYSKETMCLHCHLIVIMFHERDADPVKGAWNCPKCGHVYPFAHWKIRKQSDKKKVAS*
C687J35174_10184097	C687J35174_101840972	F065251	MYLRSFIKGGKKYYYVAKAVRKGTRVIQKSILYIGTADTLYEKLSSLKKK*
C687J35174_10190813	C687J35174_101908131	F065251	MYLRNFIKGGKKYYYVAKAVRKGARVIQKSVLYIGTADTLYEKLISLKKK*
C687J35174_10278855	C687J35174_102788552	F065251	MYLRSFKKGKKKYYYIAKAVRVGKRVIQKSVLYLGNADNIYKKLH
C687J35174_10289518	C687J35174_102895181	F065251	MYLRNFIKGNKKYYYIAKAVRNGSKVIQKSVLYIGTADTLYEKLKNLKKK*
C687J35174_10292921	C687J35174_102929212	F065251	MYLRSFKKGKKRYYYIAKAVRIKDRVIQKSVLYLGTADKIYKKLKSQK*
C687J35174_10303214	C687J35174_103032142	F065251	MYLRSFKKGKKKYYYIAKAVRVGKRVIQKSVLYLGNADNIYKKLHTK*
C687J35174_10312032	C687J35174_103120323	F033389	MVGHRAKTKTTAKKRASSARKRGLGASVYKKKRGYGVSVTRK*
C687J35174_10318640	C687J35174_103186402	F013096	MTFTVVLTGGDNAVGLSTLSQTNAVAVYVPGASGIHDNAGLNDCP
C687J35174_10443518	C687J35174_104435182	F094578	MEKEKPKWPLQRLKSMYFAMHCWKCKKFELPVEEYKKMCEDNIQKIIDGLEVREMKFKEFNNIIKNSLFCTFEKRDFSNDCSICKKFGVHGRL*
C687J35174_10478011	C687J35174_104780112	F094578	QRLKSMYFAIHCWTCKNFELPMEEYKRRCEENIQKIIDNIGIKEMKFKEFNNIVKSSTFCQFEKRNFSNNCPI*
C687J35174_10482511	C687J35174_104825111	F102416	MGEIATNGDITMGENDWGMISKNPPMYESGADNAVIEVTDIENKIHKITFKKGGVLNVGREGNTLYI
C687J35174_10610056	C687J35174_106100561	F065251	MYLRSFKKGKKKYYYIAQAVRKGKRVIQKSILYLGNADNIYKKLHTK*
C687J35174_10727187	C687J35174_107271871	F103989	MNMEKSAIKESXXHQEFDGEINATDIFMRDLRRSYPEFAKALEEFMKTELQRLDEELK*
C687J35174_10749208	C687J35174_107492082	F091390	TLRIDDSTKLKLESLDFVRKHTFNQILLELIEHYEKTKKRK*
C687J35174_10783267	C687J35174_107832672	F065251	MYLRHFIKGGKKYYYIAKAVRNGARVIQKSILYIGTADTLYEKLNSLKKK*
C687J35174_10784585	C687J35174_107845851	F091390	MSTKSTTIRIDQSTKDKLENLDFVKKHTFDEILLNLIEIYERKKK*
C687J35174_10793266	C687J35174_107932661	F080249	MADDKNKKKEDANLISFKENYEVYYAVNQLKKEFPDETKADIKEALFDAAKQVKPSEGREKIMRLVRKDLKD*

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