3300002105: Groundwater microbial communities from Rifle, Colorado - Rifle CSP2_plank lowO2_0.1

Overview

Basic Information

• IMG/M Taxon OID: 3300002105
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0053054 | Gp0056897 | Ga0005055
• Sample Name: Groundwater microbial communities from Rifle, Colorado - Rifle CSP2_plank lowO2_0.1
• Sequencing Status: Permanent Draft
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Published?: Y
• Use Policy: Open

Dataset Contents

• Total Genome Size: 912491392
• Sequencing Scaffolds: 16
• Novel Protein Genes: 16
• Associated Families: 5

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Patescibacteria group → Parcubacteria group → Candidatus Parcubacteria	1
All Organisms → cellular organisms → Archaea	10
All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Thaumarchaeota incertae sedis → Candidatus Nitrosotenuis → unclassified Candidatus Nitrosotenuis → Candidatus Nitrosotenuis sp.	1
Not Available	1
All Organisms → cellular organisms → Archaea → DPANN group → Candidatus Pacearchaeota → Candidatus Pacearchaeota archaeon	2
All Organisms → cellular organisms → Archaea → DPANN group	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Soil Microbial Communities From Rifle, Colorado, Usa
• Type: Environmental
• Taxonomy: Environmental → Aquatic → Freshwater → Groundwater → Unclassified → Groundwater → Soil Microbial Communities From Rifle, Colorado, Usa

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Free-living → Non-saline → Subsurface (non-saline)

Location Information

• Location: Rifle, Colorado, United States
• Coordinates
  • Lat. (^o): 39.53
  • Long. (^o): -107.78
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004010	Metagenome / Metatranscriptome	457	Y
F065251	Metagenome / Metatranscriptome	128	Y
F086262	Metagenome	111	N
F091390	Metagenome	107	Y
F094578	Metagenome / Metatranscriptome	106	Y

Associated Scaffolds

Scaffold	Taxonomy	Length
C687J26635_10002781	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Patescibacteria group → Parcubacteria group → Candidatus Parcubacteria	12757
C687J26635_10004725	All Organisms → cellular organisms → Archaea	9437
C687J26635_10032024	All Organisms → cellular organisms → Archaea	2937
C687J26635_10037082	All Organisms → cellular organisms → Archaea	2667
C687J26635_10042332	All Organisms → cellular organisms → Archaea	2441
C687J26635_10073372	All Organisms → cellular organisms → Archaea	1678
C687J26635_10080048	All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Thaumarchaeota incertae sedis → Candidatus Nitrosotenuis → unclassified Candidatus Nitrosotenuis → Candidatus Nitrosotenuis sp.	1577
C687J26635_10089873	All Organisms → cellular organisms → Archaea	1453
C687J26635_10099688	All Organisms → cellular organisms → Archaea	1349
C687J26635_10100160	Not Available	1345
C687J26635_10103293	All Organisms → cellular organisms → Archaea	1315
C687J26635_10131069	All Organisms → cellular organisms → Archaea	1109
C687J26635_10133318	All Organisms → cellular organisms → Archaea → DPANN group → Candidatus Pacearchaeota → Candidatus Pacearchaeota archaeon	1096
C687J26635_10165545	All Organisms → cellular organisms → Archaea	939
C687J26635_10306174	All Organisms → cellular organisms → Archaea → DPANN group → Candidatus Pacearchaeota → Candidatus Pacearchaeota archaeon	611
C687J26635_10320392	All Organisms → cellular organisms → Archaea → DPANN group	592

Sequences

Scaffold ID	Protein ID	Family	Sequence
C687J26635_10002781	C687J26635_1000278111	F004010	MPLGSNVSANMRELYKDNRKKGKARGANGKPRSRKQMIAIAINAANKATGRKRKK*
C687J26635_10004725	C687J26635_1000472512	F094578	MIEKEKPKWPLQRLKGMYFAMHCWKCKKFELPMEEYKQKCENNIQKIIDNLEIKEMKFKEFNEIIKNSTFCKFEKREFNNKCPICKKLRIKF*
C687J26635_10032024	C687J26635_100320244	F065251	MYLRSFNKSGKKYYYIAKAVRKGTKVIQKSVLYIGTADKIYEKLRKH*
C687J26635_10037082	C687J26635_100370822	F065251	MYLRSFIKGRKKYYYIAKAVRKGAQVIQKSILYIGTADTLYEKLISLKKK*
C687J26635_10042332	C687J26635_100423325	F091390	MSTKSTTLRIDDSTKLKLESLDFVRKHTFNQILLELIEHYEKTKKRK*
C687J26635_10073372	C687J26635_100733724	F094578	MYFAMHCWKCKKFELPVEEYKKMCEDNIQKIIDGLEVREMKFKEFNNIIKNSLFCTFEKRDFSNDCSICKKFGVHGRL*
C687J26635_10080048	C687J26635_100800481	F086262	MQSSLEAQCQMCRQKINIGDEIVRVASGIWIHEYCNEKTPEAQNNQDNLQDLNKKLLESKTDRLKSLKCIYCGQGSFMKSKLETAALDDGTIITKKLYPCYTCGHIMEFIENISS*
C687J26635_10089873	C687J26635_100898733	F094578	RLKGMYFAVHCWKCKRFELPMEEYKQRCENNIQKIIDSLEIKEMKFKEFNEIIKNSTFCKFEKREFNNKCPICKKLGIKF*
C687J26635_10099688	C687J26635_100996884	F094578	MDNKEERPKWPLRRLKSMYFAMHCWKCKKFELSVEEYKQSCEENIQKIIDGLDIKEMEFREFNEIIKHSTFCKFEKRGFNNNCLICKKLGI*
C687J26635_10100160	C687J26635_101001602	F065251	MYLRSFKKGKKKYYYIAKAVRNGGKVIQKSILYLGNADNIYNKLHTK*
C687J26635_10103293	C687J26635_101032932	F065251	MYLRHFTKGKKKYYYIAKAIRKGVSVIQKSVLYIGTADTLYEKLISLRKK*
C687J26635_10131069	C687J26635_101310691	F094578	KKERPKWPLQRLKSMYFAIHCWTCKNFELPMEEYKRRCEENIQKIIDNIGIKEMKFKEFNNIVKSSTFCQFEKRNFSNNCPI*
C687J26635_10133318	C687J26635_101333182	F065251	MYLRSFIKGRKRYYYIAKAVRKGLQVIQKSVLYIGTADTLYEKLKNLKKK*
C687J26635_10165545	C687J26635_101655452	F065251	MYLRHFTKGKKKYYYIAKAVRKGVSVIQKSVLYIGTADTLYEKLISLRKK*
C687J26635_10306174	C687J26635_103061741	F094578	MNNQKERLKWPLQRLKGMYFAMHCWKCKKFELPMEEYKQRCENNIQKIIDSLEIKEMKFKEFNDIIKSXTFCKFDKRDFSNNCPICKKLGISRRGL*
C687J26635_10320392	C687J26635_103203922	F065251	MYFRHFTKGSKKYYYIAKAVRKGKKITQKFVLYIGTADTLYEKLKTLKKN*