Sample 3300002101

Overview

Basic Information
IMG/M Taxon OID	3300002101 Open in IMG/M
GOLD Reference (Study \| Sequencing Project \| Analysis Project)	Gs0084162 \| Gp0055559 \| Ga0004692
Sample Name	Arctic peat soil from Barrow, Alaska - Barrow Graham LP Incubations 11-31A
Sequencing Status	Permanent Draft
Sequencing Center	DOE Joint Genome Institute (JGI)
Published?	N
Use Policy	Open

Dataset Contents
Total Genome Size	255476612
Sequencing Scaffolds	13
Novel Protein Genes	15
Associated Families	12

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Methanomicrobia → Methanosarcinales	1
All Organisms → cellular organisms → Archaea → Asgard group → Candidatus Heimdallarchaeota → Candidatus Heimdallarchaeota archaeon	1
All Organisms → cellular organisms → Bacteria	2
Not Available	5
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Marinilabiliales → Marinilabiliaceae → Anaerophaga → Anaerophaga thermohalophila	1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → unclassified Bacteroidetes → Bacteroidetes bacterium	1
All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Methanomicrobia → Methanosarcinales → Methanosarcinaceae → Methanosarcina → unclassified Methanosarcina → Methanosarcina sp. Ant1	2

Ecosystem and Geography

Ecosystem Assignment (GOLD)
Name	Arctic Peat Soil Microbial Communities From The Barrow Environmental Observatory Site, Barrow, Alaska, Usa
Type	Environmental
Taxonomy	Environmental → Terrestrial → Soil → Unclassified → Permafrost → Arctic Peat Soil → Arctic Peat Soil Microbial Communities From The Barrow Environmental Observatory Site, Barrow, Alaska, Usa

Alternative Ecosystem Assignments
Environment Ontology (ENVO)	polar biome → polar → peat soil
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline)

Location Information
Location	Barrow, Alaska, USA
Coordinates	Lat. (^o)	71.290884	Long. (^o)	-156.788063	Alt. (m)	N/A	Depth (m)	N/A
Location on Map

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Family	Category	Number of Sequences	3D Structure?
F031313	Metagenome / Metatranscriptome	183	Y
F051905	Metagenome	143	N
F059491	Metagenome	134	Y
F067652	Metagenome / Metatranscriptome	125	Y
F079367	Metagenome	116	Y
F084901	Metagenome	112	N
F085859	Metagenome	111	Y
F096256	Metagenome	105	N
F096293	Metagenome / Metatranscriptome	105	Y
F100040	Metagenome	103	N
F102533	Metagenome / Metatranscriptome	101	Y
F104110	Metagenome / Metatranscriptome	101	N

Family

Category

Number of Sequences

3D Structure?

F031313

Metagenome / Metatranscriptome

183

F051905

Metagenome

143

F059491

Metagenome

134

F067652

Metagenome / Metatranscriptome

125

F079367

Metagenome

116

F084901

Metagenome

112

F085859

Metagenome

111

F096256

Metagenome

105

F096293

Metagenome / Metatranscriptome

105

F100040

Metagenome

103

F102533

Metagenome / Metatranscriptome

101

F104110

Metagenome / Metatranscriptome

101

Scaffold	Taxonomy	Length	IMG/M Link
JGI24146J26653_1005406	All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Methanomicrobia → Methanosarcinales	4955	Open in IMG/M
JGI24146J26653_1006947	All Organisms → cellular organisms → Archaea → Asgard group → Candidatus Heimdallarchaeota → Candidatus Heimdallarchaeota archaeon	4168	Open in IMG/M
JGI24146J26653_1007415	All Organisms → cellular organisms → Bacteria	3978	Open in IMG/M
JGI24146J26653_1010662	Not Available	3076	Open in IMG/M
JGI24146J26653_1012399	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Marinilabiliales → Marinilabiliaceae → Anaerophaga → Anaerophaga thermohalophila	2750	Open in IMG/M
JGI24146J26653_1024115	Not Available	1643	Open in IMG/M
JGI24146J26653_1034068	All Organisms → cellular organisms → Bacteria	1221	Open in IMG/M
JGI24146J26653_1043190	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → unclassified Bacteroidetes → Bacteroidetes bacterium	999	Open in IMG/M
JGI24146J26653_1043228	All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Methanomicrobia → Methanosarcinales → Methanosarcinaceae → Methanosarcina → unclassified Methanosarcina → Methanosarcina sp. Ant1	998	Open in IMG/M
JGI24146J26653_1043305	Not Available	997	Open in IMG/M
JGI24146J26653_1082464	Not Available	598	Open in IMG/M
JGI24146J26653_1087632	Not Available	571	Open in IMG/M
JGI24146J26653_1094534	All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Methanomicrobia → Methanosarcinales → Methanosarcinaceae → Methanosarcina → unclassified Methanosarcina → Methanosarcina sp. Ant1	538	Open in IMG/M

Scaffold

Taxonomy

Length

IMG/M Link

JGI24146J26653_1005406

All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Methanomicrobia → Methanosarcinales

4955

Open in IMG/M

JGI24146J26653_1006947

All Organisms → cellular organisms → Archaea → Asgard group → Candidatus Heimdallarchaeota → Candidatus Heimdallarchaeota archaeon

4168

Open in IMG/M

JGI24146J26653_1007415

All Organisms → cellular organisms → Bacteria

3978

Open in IMG/M

JGI24146J26653_1010662

Not Available

3076

Open in IMG/M

JGI24146J26653_1012399

All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Marinilabiliales → Marinilabiliaceae → Anaerophaga → Anaerophaga thermohalophila

2750

Open in IMG/M

JGI24146J26653_1024115

Not Available

1643

Open in IMG/M

JGI24146J26653_1034068

All Organisms → cellular organisms → Bacteria

1221

Open in IMG/M

JGI24146J26653_1043190

All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → unclassified Bacteroidetes → Bacteroidetes bacterium

999

Open in IMG/M

JGI24146J26653_1043228

All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Methanomicrobia → Methanosarcinales → Methanosarcinaceae → Methanosarcina → unclassified Methanosarcina → Methanosarcina sp. Ant1

998

Open in IMG/M

JGI24146J26653_1043305

Not Available

997

Open in IMG/M

JGI24146J26653_1082464

Not Available

598

Open in IMG/M

JGI24146J26653_1087632

Not Available

571

Open in IMG/M

JGI24146J26653_1094534

538

Open in IMG/M

Scaffold ID	Protein ID	Family	Sequence
JGI24146J26653_1005406	JGI24146J26653_10054067	F096256	LFYAHLLLPRVWGEAVHMTSRKLQAVLAAAIVATVLTSGCLSSLTSRSSPTATPQNLSVSYDASFVLSGWHAIXKFTQVTPKTYVGTYADEKGQSWXFTVQLFSAENTSYGRYFELMKKKSDEGYVKTNESKIALGTGQTVFGRIDEKWYGYKASDSENPALYALLFGYDENAASWVVATVASGAIITTKTTTALS*
JGI24146J26653_1006947	JGI24146J26653_10069475	F085859	LYSCLIFKVKMKDGKTGEHKPKEPSFLTGQEALIYEIERACGQLNKLKGLQLNEPLFRAVAAEIRAHMDHLGLSLIELTEPCG*
JGI24146J26653_1007415	JGI24146J26653_10074151	F079367	WWMSRYELLCTTEAEDVVRKAMAKLNDAVALRDQALDLVAQLDQDISEAENEITRLGGAAFIKKSEPMIEELKVYFDNLYESLKRARPEEVTLAARKGRKLE*
JGI24146J26653_1010662	JGI24146J26653_10106626	F084901	METQRNTYYTTDRREQYKRRAFEADLLKLVIAVVAELVIFFIWFXGPARERYEILVHIALPICILLPILNYRYLIVVPFIAFLPDVARVIGIDISHSLVILPLVFLAAFLPFIRRPKTALIAGYAAFAIYASHLIIDTRKXAIIENVXGYLWNNMVLYALLLTLIGFLLVQLLRFSXTNKMAEEL*
JGI24146J26653_1012399	JGI24146J26653_10123991	F096293	MVLISTPFITFQDIKVKDIDLVEDAWGLNSEYWDVIELLRQINPVPERCLTTCLIRKIRKKV*
JGI24146J26653_1024115	JGI24146J26653_10241153	F096256	VRMASRKLESMLVTAMIATVLVSGCLSSLPLGSXPTATPQDLSVSYDASFVLSGWHAISKFTQIKPKTYVGAYADAKGQKWNFTVELFSAENNSYGRYFELMKKRSDEGYIKTTESKIALGTGQTVFGRIDEKWYGYKASDSANPALYALFFGYDETAESWVVATAASGATIITQTTTALS*
JGI24146J26653_1034068	JGI24146J26653_10340682	F102533	MTIMKSLIKKKEGKVNAKXAQCCAKTSKIIVGXHD*
JGI24146J26653_1043190	JGI24146J26653_10431902	F031313	GRKVSCHDEIVLVASKKQGTSASARQPKDAVPGDETVWVPRYLINGSEFTSIDXGAXXXSVXGWRKAXN*
JGI24146J26653_1043228	JGI24146J26653_10432281	F051905	AXXXSXXXLRNDETIISSISVTDIFFDVYLGKWNYRAIPKVKTWSYFLTIPK*
JGI24146J26653_1043305	JGI24146J26653_10433052	F067652	MNVGDPNGAGIVHLPPRESDMPVVVMIAEKVKAAGAK
JGI24146J26653_1053196	JGI24146J26653_10531961	F104110	SISSSGEVYYLVEKGEDPNIRYYFTQEDVLTSNERVVARSVGEFTDDTAKRSHFLCALYGVEVRDATNKRVGVLDNFVASPEGALVVIEDAKGNALVGRYRDLDLTRLSKFAILKQLPAQDSFDEYLKDINRDALLTKGISCDLSSVAKDEGLLSRIRKKLAQSEEDRIITDQALID*
JGI24146J26653_1072322	JGI24146J26653_10723222	F100040	MTKKETRPDLKKIISLGRKGIIDPDYMERWGQFKENWTEADLATWNKLKEKMTVSNSGELEFCPPPSSSEKVWAKKFILWAEERGLC*
JGI24146J26653_1082464	JGI24146J26653_10824642	F096256	DLSVSYDASFVLSGWHAISKFTQIKPKTYVGAYADAKGQKWNFTVELFSAENTSYNRYFELMKXXSDEGYIKTTESKIALGTGQTVFGRIDEKWYGYKASDSANPTLFALFFGYDKTADSWVVATAASGATIITQPTTALS*
JGI24146J26653_1087632	JGI24146J26653_10876321	F059491	MFSLNKLSTDDTPIPITHRCRPERTGKDMTGLELREFGLALFTSYFSDQGGELFAINMNPENGAPHVMIWNLQKVLLYVWVKTDLAPNIPVYVPNETHDFITKLSKQYKAIPSFASITISCAFPERNLIPKCGGEYY
JGI24146J26653_1094534	JGI24146J26653_10945341	F051905	ISSISVTDIVFDVYLGKWNYRAIPKVKTWSYFLTIPKVYGSCA*

Scaffold ID

Protein ID

Family

Sequence

JGI24146J26653_1005406

JGI24146J26653_10054067

F096256

LFYAHLLLPRVWGEAVHMTSRKLQAVLAAAIVATVLTSGCLSSLTSRSSPTATPQNLSVSYDASFVLSGWHAIXKFTQVTPKTYVGTYADEKGQSWXFTVQLFSAENTSYGRYFELMKKKSDEGYVKTNESKIALGTGQTVFGRIDEKWYGYKASDSENPALYALLFGYDENAASWVVATVASGAIITTKTTTALS*

JGI24146J26653_1006947

JGI24146J26653_10069475

F085859

LYSCLIFKVKMKDGKTGEHKPKEPSFLTGQEALIYEIERACGQLNKLKGLQLNEPLFRAVAAEIRAHMDHLGLSLIELTEPCG*

JGI24146J26653_1007415

JGI24146J26653_10074151

F079367

WWMSRYELLCTTEAEDVVRKAMAKLNDAVALRDQALDLVAQLDQDISEAENEITRLGGAAFIKKSEPMIEELKVYFDNLYESLKRARPEEVTLAARKGRKLE*

JGI24146J26653_1010662

JGI24146J26653_10106626

F084901

METQRNTYYTTDRREQYKRRAFEADLLKLVIAVVAELVIFFIWFXGPARERYEILVHIALPICILLPILNYRYLIVVPFIAFLPDVARVIGIDISHSLVILPLVFLAAFLPFIRRPKTALIAGYAAFAIYASHLIIDTRKXAIIENVXGYLWNNMVLYALLLTLIGFLLVQLLRFSXTNKMAEEL*

JGI24146J26653_1012399

JGI24146J26653_10123991

F096293

MVLISTPFITFQDIKVKDIDLVEDAWGLNSEYWDVIELLRQINPVPERCLTTCLIRKIRKKV*

JGI24146J26653_1024115

JGI24146J26653_10241153

F096256

VRMASRKLESMLVTAMIATVLVSGCLSSLPLGSXPTATPQDLSVSYDASFVLSGWHAISKFTQIKPKTYVGAYADAKGQKWNFTVELFSAENNSYGRYFELMKKRSDEGYIKTTESKIALGTGQTVFGRIDEKWYGYKASDSANPALYALFFGYDETAESWVVATAASGATIITQTTTALS*

JGI24146J26653_1034068

JGI24146J26653_10340682

F102533

MTIMKSLIKKKEGKVNAKXAQCCAKTSKIIVGXHD*

JGI24146J26653_1043190

JGI24146J26653_10431902

F031313

GRKVSCHDEIVLVASKKQGTSASARQPKDAVPGDETVWVPRYLINGSEFTSIDXGAXXXSVXGWRKAXN*

JGI24146J26653_1043228

JGI24146J26653_10432281

F051905

AXXXSXXXLRNDETIISSISVTDIFFDVYLGKWNYRAIPKVKTWSYFLTIPK*

JGI24146J26653_1043305

JGI24146J26653_10433052

F067652

MNVGDPNGAGIVHLPPRESDMPVVVMIAEKVKAAGAK

JGI24146J26653_1053196

JGI24146J26653_10531961

F104110

SISSSGEVYYLVEKGEDPNIRYYFTQEDVLTSNERVVARSVGEFTDDTAKRSHFLCALYGVEVRDATNKRVGVLDNFVASPEGALVVIEDAKGNALVGRYRDLDLTRLSKFAILKQLPAQDSFDEYLKDINRDALLTKGISCDLSSVAKDEGLLSRIRKKLAQSEEDRIITDQALID*

JGI24146J26653_1072322

JGI24146J26653_10723222

F100040

MTKKETRPDLKKIISLGRKGIIDPDYMERWGQFKENWTEADLATWNKLKEKMTVSNSGELEFCPPPSSSEKVWAKKFILWAEERGLC*

JGI24146J26653_1082464

JGI24146J26653_10824642

F096256

DLSVSYDASFVLSGWHAISKFTQIKPKTYVGAYADAKGQKWNFTVELFSAENTSYNRYFELMKXXSDEGYIKTTESKIALGTGQTVFGRIDEKWYGYKASDSANPTLFALFFGYDKTADSWVVATAASGATIITQPTTALS*

JGI24146J26653_1087632

JGI24146J26653_10876321

F059491

MFSLNKLSTDDTPIPITHRCRPERTGKDMTGLELREFGLALFTSYFSDQGGELFAINMNPENGAPHVMIWNLQKVLLYVWVKTDLAPNIPVYVPNETHDFITKLSKQYKAIPSFASITISCAFPERNLIPKCGGEYY

JGI24146J26653_1094534

JGI24146J26653_10945341

F051905

ISSISVTDIVFDVYLGKWNYRAIPKVKTWSYFLTIPKVYGSCA*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

3300002101: Arctic peat soil from Barrow, Alaska - Barrow Graham LP Incubations 11-31A

Overview

Ecosystem and Geography

Associated Families

Associated Scaffolds

Sequences