Sample 3300001868

Basic Information
IMG/M Taxon OID	3300001868 Open in IMG/M
GOLD Reference (Study \| Sequencing Project \| Analysis Project)	Gs0084162 \| Gp0055559 \| Ga0016755
Sample Name	Arctic peat soil from Barrow, Alaska - Barrow Graham LP Incubations 11-31A
Sequencing Status	Permanent Draft
Sequencing Center	DOE Joint Genome Institute (JGI)
Published?	N
Use Policy	Open

Basic Information

IMG/M Taxon OID

3300001868 Open in IMG/M

GOLD Reference
(Study | Sequencing Project | Analysis Project)

Gs0084162 | Gp0055559 | Ga0016755

Sample Name

Arctic peat soil from Barrow, Alaska - Barrow Graham LP Incubations 11-31A

Sequencing Status

Permanent Draft

Sequencing Center

DOE Joint Genome Institute (JGI)

Published?

Use Policy

Open

Dataset Contents
Total Genome Size	250759903
Sequencing Scaffolds	27
Novel Protein Genes	29
Associated Families	20

Dataset Contents

Total Genome Size

250759903

Sequencing Scaffolds

Novel Protein Genes

Associated Families

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Paludibacteraceae → Paludibacter → Paludibacter propionicigenes	1
All Organisms → cellular organisms → Bacteria	7
All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Methanomicrobia	1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales	1
Not Available	6
All Organisms → cellular organisms → Bacteria → Caldiserica/Cryosericota group → Candidatus Cryosericota → Candidatus Cryosericia → Candidatus Cryosericales → Candidatus Cryosericaceae → Candidatus Cryosericum	1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Cytophagia → Cytophagales → Fulvivirgaceae → Chryseolinea	1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Marinilabiliales → Prolixibacteraceae	6
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → unclassified Bacteroidetes → Bacteroidetes bacterium RBG_19FT_COMBO_42_7	1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → unclassified Bacteroidetes → Bacteroidetes bacterium	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → unclassified Actinobacteria → Actinobacteria bacterium ADurb.BinA094	1

Dataset Phylogeny

Taxonomy Groups

Number of Scaffolds

All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Paludibacteraceae → Paludibacter → Paludibacter propionicigenes

All Organisms → cellular organisms → Bacteria

All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Methanomicrobia

All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales

Not Available

All Organisms → cellular organisms → Bacteria → Caldiserica/Cryosericota group → Candidatus Cryosericota → Candidatus Cryosericia → Candidatus Cryosericales → Candidatus Cryosericaceae → Candidatus Cryosericum

All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Cytophagia → Cytophagales → Fulvivirgaceae → Chryseolinea

All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Marinilabiliales → Prolixibacteraceae

All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → unclassified Bacteroidetes → Bacteroidetes bacterium RBG_19FT_COMBO_42_7

All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → unclassified Bacteroidetes → Bacteroidetes bacterium

All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → unclassified Actinobacteria → Actinobacteria bacterium ADurb.BinA094

Ecosystem Assignment (GOLD)
Name	Arctic Peat Soil Microbial Communities From The Barrow Environmental Observatory Site, Barrow, Alaska, Usa
Type	Environmental
Taxonomy	Environmental → Terrestrial → Soil → Unclassified → Permafrost → Arctic Peat Soil → Arctic Peat Soil Microbial Communities From The Barrow Environmental Observatory Site, Barrow, Alaska, Usa

Ecosystem Assignment (GOLD)

Name

Arctic Peat Soil Microbial Communities From The Barrow Environmental Observatory Site, Barrow, Alaska, Usa

Type

Environmental

Taxonomy

Environmental → Terrestrial → Soil → Unclassified → Permafrost → Arctic Peat Soil → Arctic Peat Soil Microbial Communities From The Barrow Environmental Observatory Site, Barrow, Alaska, Usa

Alternative Ecosystem Assignments
Environment Ontology (ENVO)	polar biome → polar → peat soil
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline)

Alternative Ecosystem Assignments

Environment Ontology (ENVO)

polar biome → polar → peat soil

Earth Microbiome Project Ontology (EMPO)

Free-living → Non-saline → Soil (non-saline)

Location Information
Location	Barrow, Alaska, USA
Coordinates	Lat. (^o)	71.290884	Long. (^o)	-156.788063	Alt. (m)	N/A	Depth (m)	N/A
Location on Map

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Location Information

Location

Barrow, Alaska, USA

Coordinates

Lat. (^o)

71.290884

Long. (^o)

-156.788063

Alt. (m)

N/A

Depth (m)

N/A

Location on Map

Zoom:

Powered by OpenStreetMap^©

Family	Category	Number of Sequences	3D Structure?
F010804	Metagenome / Metatranscriptome	299	Y
F029737	Metagenome	187	Y
F029738	Metagenome	187	Y
F031313	Metagenome / Metatranscriptome	183	Y
F042098	Metagenome	159	Y
F050314	Metagenome	145	Y
F051098	Metagenome	144	Y
F051902	Metagenome / Metatranscriptome	143	Y
F076572	Metagenome	118	Y
F079367	Metagenome	116	Y

Scaffold	Taxonomy	Length	IMG/M Link
JGI24146J20443_1000098	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Paludibacteraceae → Paludibacter → Paludibacter propionicigenes	89064	Open in IMG/M
JGI24146J20443_1000335	All Organisms → cellular organisms → Bacteria	39490	Open in IMG/M
JGI24146J20443_1000728	All Organisms → cellular organisms → Bacteria	23653	Open in IMG/M
JGI24146J20443_1001776	All Organisms → cellular organisms → Bacteria	12796	Open in IMG/M
JGI24146J20443_1002261	All Organisms → cellular organisms → Bacteria	10655	Open in IMG/M
JGI24146J20443_1006685	All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Methanomicrobia	4960	Open in IMG/M
JGI24146J20443_1009804	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales	3799	Open in IMG/M
JGI24146J20443_1010778	Not Available	3542	Open in IMG/M
JGI24146J20443_1017662	All Organisms → cellular organisms → Bacteria → Caldiserica/Cryosericota group → Candidatus Cryosericota → Candidatus Cryosericia → Candidatus Cryosericales → Candidatus Cryosericaceae → Candidatus Cryosericum	2360	Open in IMG/M
JGI24146J20443_1019169	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Cytophagia → Cytophagales → Fulvivirgaceae → Chryseolinea	2199	Open in IMG/M

Scaffold

Taxonomy

Length

IMG/M Link

JGI24146J20443_1000098

89064

Open in IMG/M

JGI24146J20443_1000335

All Organisms → cellular organisms → Bacteria

39490

Open in IMG/M

JGI24146J20443_1000728

All Organisms → cellular organisms → Bacteria

23653

Open in IMG/M

JGI24146J20443_1001776

All Organisms → cellular organisms → Bacteria

12796

Open in IMG/M

JGI24146J20443_1002261

All Organisms → cellular organisms → Bacteria

10655

Open in IMG/M

JGI24146J20443_1006685

All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Methanomicrobia

4960

Open in IMG/M

JGI24146J20443_1009804

All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales

3799

Open in IMG/M

JGI24146J20443_1010778

Not Available

3542

Open in IMG/M

JGI24146J20443_1017662

2360

Open in IMG/M

JGI24146J20443_1019169

All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Cytophagia → Cytophagales → Fulvivirgaceae → Chryseolinea

2199

Open in IMG/M

Sequences

Scaffold ID	Protein ID	Family	Sequence
JGI24146J20443_1000082	JGI24146J20443_1000082116	F088556	MPKKEIRHDVATQTEYAKMVGKTPQWVNQQIKAGNLNTLQIKGAVLIKLK*
JGI24146J20443_1000098	JGI24146J20443_100009817	F076572	MKKLLICLFVVFTFIGCTTTSTPTCDQDYTFRMEFTNGSNDPYDLYINDKFQQIMGAKSKVTYDIPAGYWSAEVVQRSGYTTYQIDNVYSNTYESCTEYYIVF*
JGI24146J20443_1000335	JGI24146J20443_10003354	F029737	MTEFQFLEELEASQKNFEKLNYIFIRDMHKYIRKSTVYDSIFFKTILNYSVNITLTAEWIKLLKDFNSDKYNNILRFSPDFNHSTGVPGAIKKSVRQQHQR*
JGI24146J20443_1000728	JGI24146J20443_100072817	F050314	MSDMTHLVRPDLHVALDCPVDWTVMELDEQTGLRASDPTDPRIALQVTYDESGSALDEVSERRRNGLPEDTLCEPGTLRKGRVDADRRASPDGPPVKALAFSARDGSFVYRVLIAEDTGHRWTVRLETLQRKEWWQESRTLETILASLLLL*
JGI24146J20443_1001776	JGI24146J20443_100177613	F029737	MTEFQFLEELEASQKSFEKLNYIFIRDLHKYIRKSTVYDSTFFKTILNFSANITLTAEWIKLLKYFNSDKYNNILRFSPDFNHPTGVPDAIKKSVRQQHQR*
JGI24146J20443_1002261	JGI24146J20443_10022614	F029738	MTYKNDPRMITAKFSSSCSKCGCTIKKGTSIYYWPSDRKAYCEKCGEGPYRQFRSVAADEDMMNGTGPCAY*
JGI24146J20443_1006685	JGI24146J20443_10066853	F096256	MTSRKLLAVLAAAIVATVLTSGCLSSLTSRSSPTATPQNLSVSYDASFVLSGWHAISKFTQVTPKTYVGTYADEKGQSWNFTVQLFSAENTSYGRYFELMKKKSDEGYVKTNESKIGLGTGQTVFGRIDEKWYGYKASDSENPALYALLFGYDENAASWVVATVASGAIITTKTTTALS*
JGI24146J20443_1009804	JGI24146J20443_10098044	F029738	MSQYKNDPRMITAKFSSSCSICKTKLLKGTSIYYWSSSREVFCTKCGEGPYRQFLSSAADEDVYNGCGNPYAY*
JGI24146J20443_1010778	JGI24146J20443_10107786	F084901	METQRNTYYTTDRREQYKRRAFEADLLKLVIAVVAELVIFFIWFDGPARERYEILVHIALPICILLPILNYRYLIVVPFIAFLPDVARAIGIDISHSLVILPLVFLAAFLPFIRRPKTALIAGYAAFAIYASHLIIDTRKYAIIENVGGYLWNNMVLYALLLTLIGFLLVQLLRFSDTNKMAEEL*
JGI24146J20443_1017662	JGI24146J20443_10176623	F090156	MRTTNEMMSDNEQPLELSAELRGEVSALFAPMDRSLAGSVTAAIGMRRSRRRLLQGLWLGFSPVMAVAIVAVLYVGGAVLPRTLSLATSKRAAFAPNAEIRAQDTGPNGLVGSENFPTFATACRAPSFRVVLEGDVARRQLLVTWLRGRHADVALELATAVPGRDVALTLEPDEVQGFVALMVLHGFTGQEPSGLRIVARRSPTSWASSLGTSSLFICLIP*
JGI24146J20443_1019169	JGI24146J20443_10191692	F042098	MKKLIYLFIMVVLSVLRTSAQETGKAQEYKVPAAYRFDYKVVYEINNEEKKAPETANYYFTKNGDYMSMETADSQKEKDMNFMIRTKDGMMITFGEESVPKNPDKNRKVLKVMDMHSMMKGSGEAMAALAKNMPGKEKADAEKKKPNEMDNFVKTGKTKQVFGYTAEEYSKEITKEENGKVHSGTMSVWYAKVDFDPEMMFSLGMGNLAGGQSQSKMHPNNMIGLGMTQKNYLMVEMDYAEKGGKSGTGMKVVGIEKTNFSKSTEGYYVKNYAGMSMKEMMQKESEEK*
JGI24146J20443_1020912	JGI24146J20443_10209121	F087142	MTEFQFLENLEFYQRRFEKHHHKFIVDLNFYIRNNRVHDGVFYNTVLNYSLNITLTASWIKLLKDFNSDKYNNILRFSPDFNNSTGVPGAKINPTGSGNNE*
JGI24146J20443_1021425	JGI24146J20443_10214253	F087142	MTEFQFLENLEFYQRRFEKHHHKFIRDLNLYIRNNRVHDSVFYNTVLNYSLNITLLASWIKLLKDFNSDKYNNILRFSTEFNNSTGVPGAKINPTSSGNNE*
JGI24146J20443_1023092	JGI24146J20443_10230921	F084837	CRIPMPYNGPAIWGGCVTRREHRAGSWYFSQKTVTVQGGYGALFAVMVQILLSAGAIAVQF*
JGI24146J20443_1025380	JGI24146J20443_10253801	F080207	MRKTSIGVALCLVLIGTLTAITGVTAAPTDDSAIQRFDIAMGDYKYGKLTVDTETDQFVANAHVGKQSADEQVTLVARKDGASPHYVVIARSTVNDGGRVHWEGTLTEAQLDWIHSYGYGEVFF
JGI24146J20443_1026381	JGI24146J20443_10263813	F096256	VRMASRKLESMLVTAMIATVLVSGCLSSLPLGSXPTATPQDLSVSYDASFVLSGWHAISKFTQIKPKTYVGAYADAKGQKWNFTVELFSAENNSYGRYFELMKKRSDEGYIKTTESKIALGTGQTVFGRIDEKWYGYKASDSANPXLXALFFGYDXTAXSWVVATAASGATIITQXTTALS*
JGI24146J20443_1033235	JGI24146J20443_10332352	F104110	MYLGKDVTTEDSMELGKVSDVSISSSGEVYYLVEKGEDPNIRYYFTQEDVLTSNERVVARSVGEFTDDTAKRSHFLCALYGVEVRDATNKRVGVLDNFVASPEGALVVIEDAKGNALVGRYRDLDLTRLSKFAILKQLPAQDSFDEYLKDINRDALLTKGISCDLSSVAKDEGLLSRIRKKLAQSEEDRIITDQALID*
JGI24146J20443_1035217	JGI24146J20443_10352173	F102533	MTIMKSLIKKKEGKVNAKAAQCCAKTSKIIVGCHD*
JGI24146J20443_1037008	JGI24146J20443_10370083	F087142	MTEYQFLENLEFYQRRFENHHHKFIRDLNFYIRNNRVHDSVFFNTVLNFSLNITLTATWIKLLKDFNSDKYTNILRFSPDFNNLNGVPGANINPKGNGNNK*
JGI24146J20443_1041179	JGI24146J20443_10411791	F087142	MTEFQFLENLEFYQHRFEKLHQRIVGDMSLYIRKNHVHDSVFFKTILQFSVNITLTAAWIKLLKDFNADKYSKVLRFSPEFNSINGVPGAKINPSGNGNNK*
JGI24146J20443_1042782	JGI24146J20443_10427821	F031313	GRKVSCHDEIVLVASKKQGTSASARQPKDAVPGDETVWVPRYLINGSEFTSIDFGAGYKSVLGWRKALN*
JGI24146J20443_1046346	JGI24146J20443_10463462	F087142	MTEFQFLENLEFYQRRFEKHHHKFIVDLNFYIRNNRVHDGVFYNTVLNYSLNITLTASWIKLLKDFNSDKYNNILRFSTDFNNLNGVPGANINPRGSGNNE*
JGI24146J20443_1048189	JGI24146J20443_10481891	F010804	RWSAKVKGTAMQINDAFFLPGDDPSGWTITSFVNDDDNNNLGSFTTVTLHGTKPGQLDFDYLISLSKNENDILISLGRTNNTDKDVDIDDMDYFISRDVRLGSTCDRWISLGTQSRNRDLYELLSVINLITPKTYAVNHVVKDNDTGNSLLMGHVTTIKGASRFDGRTGWKGKTPDRMQVRGYCSYKVTMPPGKSFPGEKLLICFNHDALRAMEHQADLIAIAHDVRLKERRSINIDDMELVANNYSRFHGWMSGGNNTSATTFFRENGLFDFYWGLGGPGRSGSMAVYGSGGST
JGI24146J20443_1049755	JGI24146J20443_10497552	F087142	MTEFQFLENLDFYRRRFEKHHHKFIRDLNFYIRNNRVHDGVFYNTVLNFSLNITLTATWIKLLKDFNSDKYNNILRFSPDFNNLNGVPGAKINPTGSGKKE*
JGI24146J20443_1064701	JGI24146J20443_10647012	F051902	MTNRVFRMISRFFEGTGTSVSTPSGDARGHVRPYEAKTLTRGR
JGI24146J20443_1073291	JGI24146J20443_10732911	F087142	RRFEKHHYKFIRDLNLYIRINRVHDSVFFNTVLNYSLNITLTASWIKLLKDFNSDKYNNILRFSTDFNNLNGVPDAKINPTGSGNHE*
JGI24146J20443_1080684	JGI24146J20443_10806841	F051098	MILTPVYSCRNCKKTYSGSKQEIANVPIEKLVSAARYTLGSPDHIFRIGGKTIQLSDLHQCNANEIGLANFIKIQIG
JGI24146J20443_1083272	JGI24146J20443_10832722	F092955	MKKLLFSLLAFLGFLFPLLAQVDHDYNANDREPVRSTLITKDQVPPEVVKAVQTKFDLNNSATWSKFPYALKEYGWVYDVGASDIALDRYEVTMKTKKGDEL
JGI24146J20443_1088291	JGI24146J20443_10882911	F079367	MATNLDKAGAKIIKVLRGDVADDKFQHKDDIAWWMRRFEALCTTEADAVVRKAMAKLNQAVALRDEGINLVEQLDRDISEAESEITRLGGAAFIEKSEPMIEELKVYYDNLYESLKRSRPEKVEK*

Showing 1 to 29 of 29 entries

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

3300001868: Arctic peat soil from Barrow, Alaska - Barrow Graham LP Incubations 11-31A

Overview

Ecosystem and Geography

Associated Families

Associated Scaffolds

Sequences