3300001818: Marine plankton microbial communities from the Amazon River plume, Atlantic Ocean - ACM19, ROCA_DNA029_2.0um_3a

Overview

Basic Information

• IMG/M Taxon OID: 3300001818
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0096913 | Gp0056130 | Ga0016826
• Sample Name: Marine plankton microbial communities from the Amazon River plume, Atlantic Ocean - ACM19, ROCA_DNA029_2.0um_3a
• Sequencing Status: Permanent Draft
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 5833884
• Sequencing Scaffolds: 30
• Novel Protein Genes: 31
• Associated Families: 30

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria → Proteobacteria → unclassified Proteobacteria → Proteobacteria bacterium	1
All Organisms → Viruses → Predicted Viral	8
All Organisms → cellular organisms → Eukaryota	1
Not Available	10
All Organisms → Viruses	3
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Kyanoviridae	1
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Kyanoviridae → unclassified Kyanoviridae → Synechococcus phage S-SRM01	1
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales	1
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured phage MedDCM-OCT-S05-C22	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium TMED95	1
All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora → Intramacronucleata → Spirotrichea	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Marine Plankton Microbial Communities From The Amazon River Plume, Atlantic Ocean
• Type: Environmental
• Taxonomy: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine Plankton → Marine Plankton Microbial Communities From The Amazon River Plume, Atlantic Ocean

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): marine biome → plume front → planktonic material
• Earth Microbiome Project Ontology (EMPO): Free-living → Saline → Water (saline)

Location Information

• Location: Amazon River plume to Atlantic Ocean
• Coordinates
  • Lat. (^o): 7.2875
  • Long. (^o): -53.0005
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001971	Metagenome / Metatranscriptome	609	Y
F002197	Metagenome / Metatranscriptome	584	Y
F002907	Metagenome / Metatranscriptome	521	Y
F004546	Metagenome / Metatranscriptome	433	Y
F004898	Metagenome / Metatranscriptome	419	Y
F005478	Metagenome / Metatranscriptome	399	Y
F005629	Metagenome / Metatranscriptome	394	Y
F008422	Metagenome / Metatranscriptome	333	Y
F018020	Metagenome / Metatranscriptome	237	Y
F018707	Metagenome / Metatranscriptome	233	N
F023556	Metagenome / Metatranscriptome	209	N
F027181	Metagenome / Metatranscriptome	195	Y
F031863	Metagenome / Metatranscriptome	181	Y
F039653	Metagenome / Metatranscriptome	163	Y
F043368	Metagenome / Metatranscriptome	156	N
F046343	Metagenome / Metatranscriptome	151	Y
F052453	Metagenome / Metatranscriptome	142	Y
F052601	Metagenome	142	N
F056566	Metagenome / Metatranscriptome	137	N
F059025	Metagenome / Metatranscriptome	134	Y
F060869	Metagenome / Metatranscriptome	132	Y
F064623	Metagenome / Metatranscriptome	128	N
F066589	Metagenome / Metatranscriptome	126	Y
F077050	Metagenome	117	Y
F079773	Metagenome / Metatranscriptome	115	Y
F095500	Metagenome / Metatranscriptome	105	Y
F095589	Metagenome / Metatranscriptome	105	Y
F097147	Metagenome	104	Y
F099331	Metagenome / Metatranscriptome	103	Y
F103169	Metagenome / Metatranscriptome	101	N

Associated Scaffolds

Scaffold	Taxonomy	Length
ACM19_100081	All Organisms → cellular organisms → Bacteria → Proteobacteria → unclassified Proteobacteria → Proteobacteria bacterium	4359
ACM19_100150	All Organisms → Viruses → Predicted Viral	2293
ACM19_100153	All Organisms → Viruses → Predicted Viral	2735
ACM19_100325	All Organisms → Viruses → Predicted Viral	1067
ACM19_100433	All Organisms → cellular organisms → Eukaryota	618
ACM19_100454	All Organisms → Viruses → Predicted Viral	2169
ACM19_100698	All Organisms → Viruses → Predicted Viral	1166
ACM19_100743	All Organisms → Viruses → Predicted Viral	2082
ACM19_100766	Not Available	521
ACM19_100844	Not Available	721
ACM19_101372	Not Available	608
ACM19_101511	All Organisms → Viruses	1348
ACM19_101524	Not Available	680
ACM19_101547	Not Available	515
ACM19_102014	Not Available	603
ACM19_102034	All Organisms → Viruses → Predicted Viral	1275
ACM19_102047	All Organisms → Viruses → Predicted Viral	1215
ACM19_102075	Not Available	527
ACM19_102292	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Kyanoviridae	891
ACM19_102576	All Organisms → Viruses	539
ACM19_102956	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Kyanoviridae → unclassified Kyanoviridae → Synechococcus phage S-SRM01	549
ACM19_103177	All Organisms → Viruses	848
ACM19_103822	Not Available	1033
ACM19_104403	Not Available	590
ACM19_104574	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales	596
ACM19_105020	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured phage MedDCM-OCT-S05-C22	802
ACM19_106154	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	764
ACM19_106828	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium TMED95	527
ACM19_107583	Not Available	522
ACM19_107931	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora → Intramacronucleata → Spirotrichea	657

Sequences

Scaffold ID	Protein ID	Family	Sequence
ACM19_100081	ACM19_1000816	F095589	MEDREDVKEQIYKKICEATILQYKSDSKDIESHELDTEGAEVVDE*
ACM19_100150	ACM19_1001501	F023556	MNIFTLKNIMKEVNAPNTFQGVPSDKPNGDRYEFYHPLYWIFKVENMRIKTLDSRLTEKRKPHARFDVFMYLLTDDSQGELFVRSQDYVYEQVGNDFYVKMKRDNFPLEDRNGDPWSFSTDDRIF
ACM19_100153	ACM19_1001537	F043368	MTNGASQSFKKRILEECKKLTNEGKHIEASHLFRTYFPDFESPLPERLDNFYV*
ACM19_100325	ACM19_1003253	F005629	MKKQISESSFYIRRTWTDFVGRTVKVDHVGPYMENQEFAVGLQRQHDMRRQVPATEQITKWEWVDGVTAIADLVFN*
ACM19_100433	ACM19_1004331	F018020	GDGNTEKVSMILSGYSSLILEIRRVPIPDPVPPPREWVI*
ACM19_100454	ACM19_1004543	F099331	LQEGKKIKKRVTKKGVSKEISNSTLVVASDGSFNQQTASNALKKVLVQIIEDLL*
ACM19_100698	ACM19_1006982	F064623	ASSQLFKIINGLGVESNRDHFHQGINFGRCKHTLYPPVYEEIEKAIFVMGDPVQSIISIFRRDMAVTHIENKGLPLHPTRTDNVEIHPTTKEIYRVHPQFVKNYTLEEYVRGGQDWFMTYEHIYNWTQRETKYPVLRVKSDVQWKYGKEIFVDFLGQESVPLEYVQRDRNSTIDLVPENMKEEFTSILKEATELYNSLPEF
ACM19_100743	ACM19_1007436	F005478	MIEYNSVQRISTRLMYDDYDLDYTFVSDYTLDEDTYYEMGGLDLDEEYARDTQDYDTLAYRHYA*
ACM19_100766	ACM19_1007662	F004546	MSKQTLEEEFPFDEFPWKLIYKDGKETRKCYFQSEDHRKKHVERYKLKKKDIQLSYKYDE
ACM19_100844	ACM19_1008441	F095500	AAYTNFQNNLQPIPFSFTSSFFEEYVRTAIDGVEADLIAAEGGTLQSKKAALSYYNKNGEILIPNNYFTASYQAIDYANLLVQQILINESVTGSSDVTRLYQESVTQSIDNSLIAESGSISASVDLLNAISNTISNPTRVEQAPVDLITNVEIPAGDSLSPIVAGKLVLEQQFSLIVSGSTDLTVILSILESANE*
ACM19_100876	ACM19_1008767	F052453	MSVLSTHSPIARLTPHTKTMNKQPDFAAIMAAYTQQHNAMMARSAANRKAFAEGRPFPFPAPEGQSTTWHISDRD*
ACM19_101372	ACM19_1013722	F103169	MTSTDNLLQIAADLNAAGKTVKMTVLPTRKPKKSELVFSMTKGPRTNTNRRGQAYAGHATPSRDLTVEGNRAAYFKTSG*
ACM19_101511	ACM19_1015112	F018707	MKKRPLANVEWRKYFSLNNTTLNEYLHDYGDDFLNQSLSLIIQAHKQNLPSIVLIEFTIDGVVSVIEKKDYLLVLQRLLNLCERMEKYEICAEIVKYQKSIPPKIKTPTKKSHKITTLK*
ACM19_101524	ACM19_1015241	F056566	INCNDSPSVWTLRLNPITGTARVRWFNGPLAEYRHTGVSRRAILKMLWFSGDTSKGQWVNCHCLAQ*
ACM19_101547	ACM19_1015471	F027181	HPPKLYEVTLSSGTMHLLAPDSESAAWMALELSHERDDKLVNVRQADEW*
ACM19_102014	ACM19_1020141	F008422	MNYQKGDVFLDKDTHKLYIFDGKEWWEIVPSSYLKKPDWT*
ACM19_102034	ACM19_1020342	F004898	MDLSELIEELREIEIYDTDPQDWMGYLKEDDYWVTDPELAY*
ACM19_102047	ACM19_1020473	F066589	MEDDFLYEQDFDENLPYISMDMGIEDVRQIHESISLHLQNWVSCPDKKERLEGLKDFLER
ACM19_102075	ACM19_1020752	F002197	MYSLKILAPXXXXXXXXGLTTGQGDHCVIDNKPPNVVKYYEPGKSCYVNGTFYQKCEERNGSI*
ACM19_102292	ACM19_1022924	F001971	MMTYEEFIHKGTDFYMDMVRLIDIKLKYRMSLTDNEKEMQDHILEFQKQIKINELRDRFEKCWEVDE*
ACM19_102576	ACM19_1025762	F046343	MTLPKTSVGALTEEEILELSALKEAITYRPASVSAKKMEKFAELMVRSLEGNNPN*
ACM19_102956	ACM19_1029562	F097147	ELCVDKIETLEDIKKILDIMKVRIDTDNPDWEKAEDYFCLEVVPKGYFKLLKKIGHEGIAKLHYHEIEQQALELLNEDGK*
ACM19_103177	ACM19_1031774	F002907	MTKQNPYWFFEKWGVHEPSPLEVLEQKVQELEDKVRLLEEEMTGQSDALIDILAEHKTDV
ACM19_103822	ACM19_1038222	F031863	LDIKDTMNNKFLEVGNDLFVVKRKFKIENFEKVVKHFGAKEVCENYHCETIFRGRDGYFYLCDKVDDAKIIE*
ACM19_104403	ACM19_1044032	F077050	MADFRIKLNRANNYTVTQEKTVVAEFLSDLADVSVSDLPSKDNYVLTYNASLQKYELVPADKVLENSASDSDIPXXXXXXXXXXXXNEIDVDGGGF*
ACM19_104574	ACM19_1045742	F002907	VKQNPYWFFQKWGIDEPTPLEILTEKVKELEDKVRLLEDEMIGQTNALYECWNSLDARIDIMAQKMRTE*
ACM19_105020	ACM19_1050202	F079773	MTDANVNLNVHEIGIILSALQLLQHRDENLIAREYG*
ACM19_106154	ACM19_1061542	F059025	MANHYFKQMDTYFKLVDETNEVISVTTNFTNKCAALSVLTEPDGIEIITEGVYEAQKVQVKDYIIENL*
ACM19_106828	ACM19_1068282	F060869	MAINLGLLDYMPLPQMPFDKVPTEKQRIVEESYKAIDKRANQFKNESIYAYHPHNQNKVPQGQIVDFVVA*
ACM19_107583	ACM19_1075831	F052601	MYNLYMGFICNVLRINKIICMNYEIEIEYYDQDGCIFYIGETPYEVELYIETRIYNSFTDTIKYVQFEERYYRVDQTTLRCDGINYYDEEDICEQLEEILNG*
ACM19_107931	ACM19_1079312	F039653	VLVKFAFFGFLKVLLTIQLEPTFYFVYPFLTIGVCDAVFKLFYQIDLKKLVAYSTVVEMH