3300001750: Oil polluted marine microbial communities from Coal Oil Point, Santa Barbara, California, USA - Sample 1

Overview

Basic Information

• IMG/M Taxon OID: 3300001750
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0090292 | Gp0057567 | Ga0004151
• Sample Name: Oil polluted marine microbial communities from Coal Oil Point, Santa Barbara, California, USA - Sample 1
• Sequencing Status: Permanent Draft
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Published?: Y
• Use Policy: Open

Dataset Contents

• Total Genome Size: 544336013
• Sequencing Scaffolds: 31
• Novel Protein Genes: 34
• Associated Families: 19

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales	3
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae	5
All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes	1
All Organisms → cellular organisms → Bacteria	3
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	2
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Methylococcales → Methylococcaceae → Methylomonas → unclassified Methylomonas → Methylomonas sp. EFPC1	1
Not Available	7
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → unclassified Xanthomonadales → Xanthomonadales bacterium	1
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Ecdysozoa → Panarthropoda → Arthropoda → Chelicerata → Pycnogonida → Pantopoda → Nymphonidae → Nymphon → Nymphon striatum	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	5
All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfobacterales → Desulfobulbaceae → Candidatus Electrothrix → Candidatus Electrothrix marina	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Marine Microbial Communities From The Santa Barbara Channel Oil Seeps
• Type: Environmental
• Taxonomy: Environmental → Aquatic → Marine → Oil Seeps → Unclassified → Marine → Marine Microbial Communities From The Santa Barbara Channel Oil Seeps

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): marine biome → oil seep → sea water
• Earth Microbiome Project Ontology (EMPO): Free-living → Saline → Sediment (saline)

Location Information

• Location: Coal Oil Point, Santa Barbara, CA
• Coordinates
  • Lat. (^o): 34.39225
  • Long. (^o): -119.845662
  • Alt. (m): N/A
  • Depth (m): 47

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004052	Metagenome / Metatranscriptome	455	Y
F004928	Metagenome / Metatranscriptome	418	Y
F008223	Metagenome / Metatranscriptome	337	Y
F016971	Metagenome / Metatranscriptome	243	Y
F030933	Metagenome / Metatranscriptome	184	Y
F036294	Metagenome / Metatranscriptome	170	Y
F054877	Metagenome / Metatranscriptome	139	Y
F059466	Metagenome / Metatranscriptome	134	Y
F059476	Metagenome / Metatranscriptome	134	Y
F060609	Metagenome / Metatranscriptome	132	Y
F079376	Metagenome / Metatranscriptome	116	Y
F079616	Metagenome	115	Y
F079636	Metagenome	115	Y
F082105	Metagenome / Metatranscriptome	113	Y
F092074	Metagenome	107	Y
F092080	Metagenome	107	Y
F093886	Metagenome	106	Y
F097559	Metagenome / Metatranscriptome	104	Y
F105203	Metagenome	100	N

Associated Scaffolds

Scaffold	Taxonomy	Length
JGI24023J19991_10000859	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales	23854
JGI24023J19991_10001601	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae	17176
JGI24023J19991_10002841	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	12394
JGI24023J19991_10002893	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales	12288
JGI24023J19991_10003492	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae	11027
JGI24023J19991_10005437	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae	8428
JGI24023J19991_10005596	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae	8255
JGI24023J19991_10006842	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes	7229
JGI24023J19991_10008808	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales	6079
JGI24023J19991_10010580	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae	5359
JGI24023J19991_10012400	All Organisms → cellular organisms → Bacteria	4800
JGI24023J19991_10019369	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	3470
JGI24023J19991_10028869	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	2584
JGI24023J19991_10039321	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Methylococcales → Methylococcaceae → Methylomonas → unclassified Methylomonas → Methylomonas sp. EFPC1	2052
JGI24023J19991_10047995	Not Available	1766
JGI24023J19991_10054185	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → unclassified Xanthomonadales → Xanthomonadales bacterium	1591
JGI24023J19991_10065856	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Ecdysozoa → Panarthropoda → Arthropoda → Chelicerata → Pycnogonida → Pantopoda → Nymphonidae → Nymphon → Nymphon striatum	1345
JGI24023J19991_10077587	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	1165
JGI24023J19991_10078822	Not Available	1149
JGI24023J19991_10081551	Not Available	1114
JGI24023J19991_10091546	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfobacterales → Desulfobulbaceae → Candidatus Electrothrix → Candidatus Electrothrix marina	1007
JGI24023J19991_10096510	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	962
JGI24023J19991_10115143	All Organisms → cellular organisms → Bacteria	826
JGI24023J19991_10116300	Not Available	819
JGI24023J19991_10124475	Not Available	773
JGI24023J19991_10147257	All Organisms → cellular organisms → Bacteria	672
JGI24023J19991_10148287	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	669
JGI24023J19991_10152385	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	655
JGI24023J19991_10165332	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	614
JGI24023J19991_10175443	Not Available	586
JGI24023J19991_10196880	Not Available	538

Sequences

Scaffold ID	Protein ID	Family	Sequence
JGI24023J19991_10000859	JGI24023J19991_1000085911	F079616	MNTSFEIGEIVVCINAKRRWYRLGGLQENEMYTVVGFNPYDGGLILKEVKSPRSGYNAFAANRFRRVDYNFAENVLAELQPREYEIAAVKNFKLSVLN*
JGI24023J19991_10001601	JGI24023J19991_100016011	F079616	MNNTFKIGEIVVCINAKRRWYRLGGLLENEMYTVEGFNPYDGGLILKEAKSPRSGYKAFAANRFRKVDYNFAENLMTELQPQELGIVAIKKYELSVLN*
JGI24023J19991_10002841	JGI24023J19991_100028415	F079376	LLPGVGDHGMSDIMIIREPGRPCVSFGVMRVYRTTEEGGRQIKHRESDSLVVPMKAGNAAGGKEASNERRAMGVLFLY*
JGI24023J19991_10002893	JGI24023J19991_100028937	F079616	MENTFEIGEIVVCINARRNWYKLGGLKKDEMYTVVGFNPYDNGLILKEVKSPGSGYHAFAAERFRKIDYNFAENVLEELQPQTESQIISESQAQDFINSNLN*
JGI24023J19991_10003492	JGI24023J19991_100034926	F079616	MNNTFKIGEIVVCVNAKRRWYRLGGLQENEMYTVEGFNPYDGGLILKEAKSPRSGYKAFAANRFRKVDYNFAENLMTALQSQELGIVAVNNYKLSVLN*
JGI24023J19991_10003492	JGI24023J19991_100034927	F079616	MNNEFKIGETVVCIDAKRRWYRLGGLKENEMYTVTGFNPYDGGLILNEVKSRWSGHNAYRLDRFRKVDYAFAEKVIASFQPQEEKIHQIELKS*
JGI24023J19991_10005437	JGI24023J19991_100054374	F079616	MFKVGEIVVCVNAKRKWYRLGGLEKNEMYTVTGFNPYDGGLILKEAKSPRSGCNAYAAGRFRKVDYGFADNLLHELQVQETPMPQPQINPELEPQKFELSLLN*
JGI24023J19991_10005437	JGI24023J19991_100054375	F079616	MFKIGEIVVCVDARRRWFRLDGLREKEMYTVVGFNPYDDGLILKEVKSRGSGYKAYAADRFRKVDYKFAERLLVEIQTEPILKNETPIEKFKNSDLN*
JGI24023J19991_10005596	JGI24023J19991_100055964	F079616	MFKVGEIVVCVNAKRKWYRLGGLEKNEMYTVTGFNPYDGGLILKEIKSPRSGCNAYAVSRFRKVDYSFADNILQDLQVQEMQVPQPQINPELQPQKFELSLLN*
JGI24023J19991_10005596	JGI24023J19991_100055965	F079616	MFKIGEIVVCVDARRRWYRLDGLRSKEMYTVVGFNPYDDGLILKEVKSRGSGYKAYAADRFRKVDYKFAERLLAEIQTEPILKSEFPVERFKNSDLN*
JGI24023J19991_10006842	JGI24023J19991_100068429	F079616	MNNTFEIGEIVVCVNAKRRWYRLGGLQENEMYTVTGFNPYDGGLILKEAKSPKSGYNAFAASRFRKVDYNFANNIIEEIQPKEYETAAVKNYKLSVLN*
JGI24023J19991_10008808	JGI24023J19991_100088086	F079616	MNNTFEIGEIVVCVNAKRRWYRLGGLQENEMYTVTGFNPYDGGLILKEVKSPKSGYNAFAASRFRKVDYNFAKNVLTEFQPKEYEVAAIKKYELSVLN*
JGI24023J19991_10010580	JGI24023J19991_100105803	F079616	MDNTFEIGEIVVCVNAKRRWYRLGGLQENEMYTVTGFNPYDGGLILKEVKSPKSGYNAFAASRFRKVDYNFAQNVLTEFQPKEYEVAAIKKYELSVLN*
JGI24023J19991_10012400	JGI24023J19991_100124002	F036294	MDRGSSDEAIVGVKLTASEDAVTYLRIKLSESDMDVGAEGRNK*
JGI24023J19991_10019369	JGI24023J19991_100193692	F059476	VKIMAEQDNRRQSTRMVVTVVLLVLLALGFFAASFFVLT*
JGI24023J19991_10028869	JGI24023J19991_100288693	F105203	MQQGKHAEQMVNRFRELIEDAGDSLSTNHYDELKLIIEAGLDTALLENLERVTEKLTGLAHDIQHNAEFFD*
JGI24023J19991_10039321	JGI24023J19991_100393212	F036294	MGRGFSDEAIVGVKLSACEGAVTYLRIKLAESDKEVGAEGRNM*
JGI24023J19991_10047995	JGI24023J19991_100479952	F060609	MEGERMKESLKPITDSMDRREFCKKAIKRSSVAAAAGVAGYLAYKKPAIRSFFGAGDAYAASTGAGKFSLKGDCN*
JGI24023J19991_10054185	JGI24023J19991_100541851	F093886	MKYWILILAPTFLLSAAPDIQAHNLVGANGKTQDHQHVYRRQEYGKPLQQGHLNQAPGGGSMILWRSGTRSDYGKLNARRDGPIIDDRKPRPGKMSIGSKKYGSAVKDYGKPK
JGI24023J19991_10065856	JGI24023J19991_100658561	F008223	MTAGGIFGKFFRKKPRPPTAVEDVGRIIDRFATATSMGIDREDLGRYPARQYQVMAFHYGAIDYLSHQYDLDETQSLGVFVVFINTYFSMPITETGSISERLQGFREKPAERRFMEAGADVFRRWHEENERRAPLELGDMLKER*
JGI24023J19991_10077587	JGI24023J19991_100775872	F004928	MGQALHSIESEPDHTVEIVVHITETLGEQQREDLVAALEDSGGITAAEFCPLRYHLMLVRYDRELYSSQDVLNRVTSQNVNAKLIGPV*
JGI24023J19991_10078822	JGI24023J19991_100788221	F030933	MSDILQSSELRRKRARAVRTAWILGLIAVAIFTTFIGSAIVGR
JGI24023J19991_10081551	JGI24023J19991_100815511	F059466	MYKNVKNELPTDTFECLVKMWNKFNDSYETGIGIYDIQTKQWEIQDNDIVINYPVNFWFKTPKL*
JGI24023J19991_10091546	JGI24023J19991_100915461	F036294	MDRGSTDEAVVGVXSVADEDAVTYLRVKLPESDRDVGXEGRNM*
JGI24023J19991_10096510	JGI24023J19991_100965102	F016971	MDQAVQHVAGEAKNAVEIVVHVSEDLGEEQRNLVVSALEKTDGIIGAEFCLLRNHLVLTKYNREIYSSHDVLKSFNSLNLKAKLIGPI*
JGI24023J19991_10115143	JGI24023J19991_101151432	F092074	MNSPGSTITLIVAGILQAVSLPACADDIATLLCNFKHGQIEVVINYTKGTANGATAIIEDKEIIWTPGGKKQGMAVINRYTGIMQLSKGSKEFYGSCNKKPE*
JGI24023J19991_10116300	JGI24023J19991_101163002	F060609	MKESSKPITDSMDRREFCKKAIKRSSVAAAAGVAGYLAYKKPAIRSFFGAGDAYAASTGAGKFSLKGDCN*
JGI24023J19991_10124475	JGI24023J19991_101244753	F079636	SEYGKFTVDGTGSYNSYTPDNPNKTAADGTIDTLGETQILGFDLSTNDSLVMPIRKKYEAFDDPTLLRRQKQGFFGWADQGFACLDSRMLGMGVIDRSL*
JGI24023J19991_10147257	JGI24023J19991_101472571	F097559	MKRILFSGDGSSGDLLPMVLMAREFKLAGYEVCVCGSSEFSQMASDFDVPFEGYPHNYTKMYLEGQRPGYIHNMRENIRHQEMLYQGEYELLSKIAPQFDVIINFLAEIFVPSIAEAFKLPNIKLYTFPVVRSDRYAPPTGLPFITENKWLNFLQWEAALVAARHVFSYNATVNRLRAKLGLPPVDDLLGN
JGI24023J19991_10148287	JGI24023J19991_101482872	F054877	LNKPFKNLRVLARFNPMTTDDLDADLINLVGAEAVFSYHQFVDEDDTPYSNQWVLTAEDQRFGDYWFPESDLDILQEKDCA*
JGI24023J19991_10152385	JGI24023J19991_101523851	F082105	MFIAPMAAPLMHEPPRCAGQPYATAQPAVAGTIMRIDSVDSGRVNEKK*
JGI24023J19991_10165332	JGI24023J19991_101653322	F004928	MGQALHSIENEPEHTVEIVVHITETLGEQRREDLVASLEGNGGITTAEFCPLRYHLMLVRYDRDLYSSQDVLDRVTSQNVNARLIGPV*
JGI24023J19991_10175443	JGI24023J19991_101754432	F092080	MQDKRVTIRIPFEIWKSLRELQTIGKISSIQQAAVTSMDRFIESLKNGAEENQKEAAKKRVLNFLTKEKPLGNWEDIHKERMAADVDRS*
JGI24023J19991_10196880	JGI24023J19991_101968801	F004052	MRILTTTVYLAITALLLSCDQQHSASGIDPKLGLECFEIHRASLPPGTQYEGIEKIAENRLIIKIMNGVEVETLDCGLNPDGALQNTGK*