3300001579: Marine microbial communities from the Deep Atlantic Ocean - MP0740

Overview

Basic Information

• IMG/M Taxon OID: 3300001579
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0053074 | Gp0054069 | Ga0000800
• Sample Name: Marine microbial communities from the Deep Atlantic Ocean - MP0740
• Sequencing Status: Permanent Draft
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 36663823
• Sequencing Scaffolds: 8
• Novel Protein Genes: 8
• Associated Families: 8

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
Not Available	6
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales → Pelagibacteraceae → Candidatus Pelagibacter → unclassified Candidatus Pelagibacter → Candidatus Pelagibacter sp. IMCC9063	1
All Organisms → cellular organisms → Bacteria → FCB group → Candidatus Marinimicrobia → Candidatus Marinimicrobia bacterium	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Deep Ocean Microbial Communities From The Global Malaspina Expedition
• Type: Environmental
• Taxonomy: Environmental → Aquatic → Marine → Oceanic → Unclassified → Deep Ocean → Deep Ocean Microbial Communities From The Global Malaspina Expedition

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): marine biome → marine water body → sea water
• Earth Microbiome Project Ontology (EMPO): Free-living → Saline → Water (saline)

Location Information

• Location: South Atlantic Ocean
• Coordinates
  • Lat. (^o): -31.81
  • Long. (^o): 6.84
  • Alt. (m): N/A
  • Depth (m): 4001.3

Associated Families

Family	Category	Number of Sequences	3D Structure?
F014192	Metagenome	265	Y
F020717	Metagenome / Metatranscriptome	222	Y
F027993	Metagenome	193	Y
F035075	Metagenome / Metatranscriptome	173	Y
F063069	Metagenome	130	Y
F076187	Metagenome	118	Y
F082562	Metagenome	113	N
F085813	Metagenome	111	N

Associated Scaffolds

Scaffold	Taxonomy	Length
JGI11834J15748_1003569	Not Available	1320
JGI11834J15748_1004307	Not Available	1161
JGI11834J15748_1005437	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales → Pelagibacteraceae → Candidatus Pelagibacter → unclassified Candidatus Pelagibacter → Candidatus Pelagibacter sp. IMCC9063	981
JGI11834J15748_1008178	Not Available	744
JGI11834J15748_1009267	Not Available	684
JGI11834J15748_1010056	All Organisms → cellular organisms → Bacteria → FCB group → Candidatus Marinimicrobia → Candidatus Marinimicrobia bacterium	646
JGI11834J15748_1014232	Not Available	521
JGI11834J15748_1014482	Not Available	516

Sequences

Scaffold ID	Protein ID	Family	Sequence
JGI11834J15748_1003569	JGI11834J15748_10035691	F020717	KLNDISIVACTRFLALLETTQCWDFLRPHHILHENKDIWCFRDLNEQKDISISALILMLSEN*
JGI11834J15748_1004307	JGI11834J15748_10043071	F076187	MPDCINPALTVSVIICPDGLVSLAITHFFEFISXEKFFENFXTSRNVKSFPKIPLIPDTDIFNASNLDTLFINSERKWLVPR*
JGI11834J15748_1005437	JGI11834J15748_10054371	F063069	MPNSPWEIFNSSLILELNSPIKKLCPTHEKKVKTKPKIIILKLDLTISIIMFNYEL*
JGI11834J15748_1008178	JGI11834J15748_10081781	F035075	LICFFNNAISNKYVNKIIKLRRLWGIQKNTEAVGKWDPKKEELEKKIRKNSX
JGI11834J15748_1009267	JGI11834J15748_10092672	F027993	KAAKIKPNLRPILLIIFAAKIVKIAVPTTDKAVGNVDKDFIEVICDPIIPLKKTVIVAAVNPKT*
JGI11834J15748_1010056	JGI11834J15748_10100561	F082562	LSTNLFAQTNDSLRNYFLDIELSIIHPILGGFGGTIGIERNHSSFGVMGFGTKLNHMMKHYFIEDAEELAVYNWGVELYSDYYIKQNHRGLFIGSLVSINGFRFTDIPNPQTILVLYAVPRVGYRICLPKKLNAFYFQPSLTAHIKFWDNQEQFLYREIDTKSIFLLSQLTLGMKI*
JGI11834J15748_1014232	JGI11834J15748_10142322	F085813	MDQIEIIWILVTGIGALNYGLNAYQKGFRRLLKWDVIFLIILNTLMFVPLSLIVGLS*
JGI11834J15748_1014482	JGI11834J15748_10144821	F014192	NNKIENEKKFINVKLYGGKPIIVIAPNINGAKNITKNLLFNKESKLKSLLLSN*