3300001415: Arctic peat soil from Barrow, Alaska - NGEE Surface sample 415-3 shallow-072012

Overview

Basic Information

• IMG/M Taxon OID: 3300001415
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0084162 | Gp0056298 | Ga0003470
• Sample Name: Arctic peat soil from Barrow, Alaska - NGEE Surface sample 415-3 shallow-072012
• Sequencing Status: Permanent Draft
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 9396342
• Sequencing Scaffolds: 4
• Novel Protein Genes: 4
• Associated Families: 4

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Frankiales → Frankiaceae → Frankia	1
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Pezizomycotina → leotiomyceta → sordariomyceta → Sordariomycetes → Sordariomycetidae → Diaporthales → Gnomoniaceae → Ophiognomonia → Ophiognomonia clavigignenti-juglandacearum	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Arctic Peat Soil Microbial Communities From The Barrow Environmental Observatory Site, Barrow, Alaska, Usa
• Type: Environmental
• Taxonomy: Environmental → Terrestrial → Soil → Unclassified → Permafrost → Arctic Peat Soil → Arctic Peat Soil Microbial Communities From The Barrow Environmental Observatory Site, Barrow, Alaska, Usa

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): polar biome → polar → peat soil
• Earth Microbiome Project Ontology (EMPO): Free-living → Non-saline → Soil (non-saline)

Location Information

• Location: Barrow Environmental Observatory site, Barrow, Alaska
• Coordinates
  • Lat. (^o): 71.2999
  • Long. (^o): -156.61
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F035555	Metagenome / Metatranscriptome	172	Y
F065249	Metagenome / Metatranscriptome	128	Y
F081918	Metagenome / Metatranscriptome	114	Y
F092632	Metagenome / Metatranscriptome	107	Y

Associated Scaffolds

Scaffold	Taxonomy	Length
JGI20184J14884_100158	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Frankiales → Frankiaceae → Frankia	2610
JGI20184J14884_100784	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Pezizomycotina → leotiomyceta → sordariomyceta → Sordariomycetes → Sordariomycetidae → Diaporthales → Gnomoniaceae → Ophiognomonia → Ophiognomonia clavigignenti-juglandacearum	1309
JGI20184J14884_102651	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	605
JGI20184J14884_102786	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	584

Sequences

Scaffold ID	Protein ID	Family	Sequence
JGI20184J14884_100158	JGI20184J14884_1001581	F035555	VHPMSQLAFDLDDVAPEXPPPVIGRPPDDLPDRDREAAVAKLASLIARYHTAEGSADDHQ
JGI20184J14884_100784	JGI20184J14884_1007841	F081918	EDLTDLNNIPTPCPYLLIIYIIISNGVAERWVNLRFILFKTNY*
JGI20184J14884_102651	JGI20184J14884_1026512	F092632	PVREQLDRYGISAALGPDAYFDTPGEALEVFHAENG*
JGI20184J14884_102786	JGI20184J14884_1027861	F065249	MMTGVDSFIGPQVETMVILLGTLFGVIIWGFFQRHRSE*