Basic Information | |
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Family ID | F065249 |
Family Type | Metagenome / Metatranscriptome |
Number of Sequences | 128 |
Average Sequence Length | 38 residues |
Representative Sequence | MQAVDSFIGPQVQTMVVLLGVLFGVLIWGFFQRHHSE |
Number of Associated Samples | 88 |
Number of Associated Scaffolds | 128 |
Quality Assessment | |
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Transcriptomic Evidence | Yes |
Most common taxonomic group | Bacteria |
% of genes with valid RBS motifs | 86.99 % |
% of genes near scaffold ends (potentially truncated) | 8.59 % |
% of genes from short scaffolds (< 2000 bps) | 52.34 % |
Associated GOLD sequencing projects | 75 |
AlphaFold2 3D model prediction | Yes |
3D model pTM-score | 0.52 |
Hidden Markov Model |
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Most Common Taxonomy | |
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Group | Bacteria (82.031 % of family members) |
NCBI Taxonomy ID | 2 |
Taxonomy | All Organisms → cellular organisms → Bacteria |
Most Common Ecosystem | |
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GOLD Ecosystem | Environmental → Terrestrial → Soil → Unclassified → Permafrost → Arctic Peat Soil (22.656 % of family members) |
Environment Ontology (ENVO) | Unclassified (47.656 % of family members) |
Earth Microbiome Project Ontology (EMPO) | Free-living → Non-saline → Soil (non-saline) (60.156 % of family members) |
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Full Alignment |
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Alignment of all the sequences in the family. |
IDLabel .2.4.6.8.10.12.14.16.18.20.22.24.26.28.30.32.34.36.38.40.42.44.46.48 |
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Predicted Topology & Secondary Structure | |||||
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Classification: | Transmembrane (alpha-helical) | Signal Peptide: | No | Secondary Structure distribution: | α-helix: 43.08% β-sheet: 0.00% Coil/Unstructured: 56.92% |
Feature Viewer | |||||
Position : 0 Zoom : x 1 Enter the variants Position Original Variant |
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Structure Viewer | |
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Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100 | pTM-score: 0.52 |
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Visualization |
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All Organisms Unclassified |
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Visualization |
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Watersheds Peatland Bog Forest Soil Bog Peatland Sediment Watersheds Glacier Forefield Soil Surface Soil Peatlands Soil Arctic Peat Soil Soil Untreated Peat Soil Tropical Peatland Bog Soil Palsa Permafrost Forest Soil Soil Soil Fen Bog |
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Protein ID | Sample Taxon ID | Habitat | Sequence |
JGI12269J14319_100331994 | 3300001356 | Peatlands Soil | VQAVDIYIGPQVQTLVVLLGVFFAVCLWGFFQRHPSE* |
JGI12269J14319_101659482 | 3300001356 | Peatlands Soil | MFGLDPYIGPEVETMVILLGVFFGVVIWLFFQRPRAE* |
JGI20190J14840_10040273 | 3300001384 | Arctic Peat Soil | VVVKHAVDSFIGPQVETLVILLGTFFAVVIWGFFQRHHPE* |
JGI20189J14885_10073482 | 3300001401 | Arctic Peat Soil | MPGVDSFIGPQVETMVILLGTLFAVAIWGFFQRHHSE* |
JGI20206J14855_10498871 | 3300001408 | Arctic Peat Soil | MHSLDIYIGPQIQTLVVPLGVLFGVVLWGFFQRQPSE* |
JGI20184J14884_1027861 | 3300001415 | Arctic Peat Soil | MMTGVDSFIGPQVETMVILLGTLFGVIIWGFFQRHRSE* |
JGI12712J15308_100018472 | 3300001471 | Forest Soil | VVVIPGVDNFIGPQVETLVILLGTLFGVLIWGFFQSHHSE* |
Ga0070735_100462523 | 3300005534 | Surface Soil | VLAGDIYIGPEVQTMVVLLGVFAAVCLWGFFQRRPSE* |
Ga0070733_110028472 | 3300005541 | Surface Soil | MTGVDSFIGPQVETLVILLGTLFAVIIWGFFQSHHSE* |
Ga0066789_105052811 | 3300005994 | Soil | MMQAVDIYIGPQVQTMVVLLGVFCAVLVWGFFQRHHSE* |
Ga0075029_1000014863 | 3300006052 | Watersheds | MQAVDNFIGPQVQTMVVLLGVLFAVLLWGFFQRHHSE* |
Ga0075029_1007335632 | 3300006052 | Watersheds | MMQAVDIYIGPQVQTMVVLLGVLFGVLIWGFFQRHPSE* |
Ga0075017_1000025966 | 3300006059 | Watersheds | MMQAVDNYIGPQVQTMVVLLAVLVGLLVWGFSQRHHSE* |
Ga0075017_1000835463 | 3300006059 | Watersheds | MQAVDIYIGPQVQTMVVLLGVFCAVCVWGFFQRHHSE* |
Ga0075017_1002260373 | 3300006059 | Watersheds | MQAVDSFIGPQVQTMVVLLGVLFGVLIWGFFQRHHSE* |
Ga0075017_1002323412 | 3300006059 | Watersheds | VNNSIGPQVQTMVVLLGVLFGVLIWGFFQRHPSE* |
Ga0075019_107170012 | 3300006086 | Watersheds | AGGSTRVEVFVIPGVDSYIGPQVETMVILLGTLFVVVIWGFFQHHSE* |
Ga0075019_107429562 | 3300006086 | Watersheds | VMMQAVDIYIGPQVQTMVVLLGVLFGVLIWGFFQRHPSE* |
Ga0075015_1000239532 | 3300006102 | Watersheds | MQAVDNYIGPQVQTMVVLLAVLVGLLVWGFSQRHHSE* |
Ga0075522_1000246216 | 3300006638 | Arctic Peat Soil | MLGVDSYIGPQVQTLVVLLGTFFGVIIWLFFQRKHSE* |
Ga0075522_100051252 | 3300006638 | Arctic Peat Soil | MPGVDSFIGPQVETMVILLGTLFVVIIWGFFQRHHSE* |
Ga0075520_10121063 | 3300006795 | Arctic Peat Soil | MPGVDSFIGPQVETMVILLGTLFVVIIWGFFQRHRSE* |
Ga0075520_10234072 | 3300006795 | Arctic Peat Soil | MMQAVDQFIGPQVQTMVVLLGVLCAVLIWGFFQRHPSE* |
Ga0075528_102323612 | 3300006949 | Arctic Peat Soil | MMQAVDIYIGPQVQTMVVLLGVLCGVLIWGFFQRHPSE* |
Ga0116125_11128272 | 3300009628 | Peatland | MHSVDSYIGPQIETMAILLGTLFVVLIWGFFQRHHSE* |
Ga0116117_10519702 | 3300009635 | Peatland | MVEGLVMMQAVDSYIGAQVQTLVVLLGVFIGIMVWGFFQRHHFK* |
Ga0116215_10961992 | 3300009672 | Peatlands Soil | VEVQAVDIYIGPQVQTLVVLLGVFFAVCLWGFFQRHPSE* |
Ga0116217_102182803 | 3300009700 | Peatlands Soil | MFGLDPYIGPEVETMVILLGVFFGVVIWLFFQRPRA |
Ga0136449_1003973543 | 3300010379 | Peatlands Soil | MFGVNPYIGSQVESMVILLGVFFAVTIWLYFQRHRAE* |
Ga0136449_1011394832 | 3300010379 | Peatlands Soil | VRRAEEGEEVEVQAVDMYIGPQVQTMVVLLGVFCAVVLWGFFQRHPSE* |
Ga0136806_12696973 | 3300010386 | Sediment | MLGADGYIGAQVQTMVVLLGVLFGVIIWGFFQRRPSK* |
Ga0136821_12974721 | 3300010387 | Sediment | VQGVDIYIGPQVQTMVVLLGVLFGVLIWGFFQRHPSE* |
Ga0181528_101158051 | 3300014167 | Bog | MQAVDTYFGAQAQTMVVLLGVFVAVILWGFFQRHSSE* |
Ga0181528_101625132 | 3300014167 | Bog | MMTGVDSFIGPQVETMVILLGTLFVVVIWGFFQRHRSE* |
Ga0182018_100252923 | 3300014489 | Palsa | MPGVDSYIGPQVETMVILLGTLFVVVIWGFFQRHHSE* |
Ga0182013_1000023445 | 3300014492 | Bog | MQGIDIYIGPQVQTMVVLLGVFIGVVLWGFFQRRPSE* |
Ga0182013_102653792 | 3300014492 | Bog | MVEGLVMMQAVDIYIGAQVQTMVVLLGVFIGIMVWGFFQRHHFK* |
Ga0182016_100272645 | 3300014493 | Bog | MFGVDSYIGPQVETILILLGTLFGVIIWGIFQRHGPE* |
Ga0182016_100319967 | 3300014493 | Bog | VDSYIGPQVETLVILLGTLFGVIIWGFFQRHGPE* |
Ga0182016_105335532 | 3300014493 | Bog | MQAVDTHFGAQAQTMVVLLGVFVAVILWGFFQRHSSE* |
Ga0182012_1000017733 | 3300014499 | Bog | MFGVDSYIGPQVETLVILLGTLFGVIIWGFFQRHGPE* |
Ga0182024_1000027290 | 3300014501 | Permafrost | MQGVDIYIGPQVQTLVVLLGVFIGVVLWGFFQHHHSE* |
Ga0182024_1000842018 | 3300014501 | Permafrost | MMQAVDSYIGPQVETLVVLLGVFIGVMVWGFFQRHHFK* |
Ga0182024_1001071219 | 3300014501 | Permafrost | MMQAVDIYIGAQVQTLVVLLGVFIGVCFWGFFQRHHFK* |
Ga0182024_100118898 | 3300014501 | Permafrost | MLGVDNFIGPQVQTLVVLLGTLFAVMIWGFFQRNHSE* |
Ga0182024_102731894 | 3300014501 | Permafrost | MVEGLVMMQAVDIYIGAQVQTLVVLLGVFIGVCFWGFFQRHHFK* |
Ga0182024_109725612 | 3300014501 | Permafrost | MMQGVDIFIGPQVQTLVVLLGVFIGVVLWGFFQHHHPE* |
Ga0181525_100050226 | 3300014654 | Bog | LRVEVVMMTGVDSFIGPQVETMVILLGTLFVVVIWGFFQRHRSE* |
Ga0181522_100374733 | 3300014657 | Bog | VIPGVDSYIGPQVETMVILLGTLFVVVIWGFFQHHSE* |
Ga0181522_104581621 | 3300014657 | Bog | GVVMHSVDSYIGPQIETMAILLGTLFVVLIWGFFQRHHSE* |
Ga0182030_100013952 | 3300014838 | Bog | MAGVDSFIGPQVETMVILLGTLFVVVIWGFFQRHHSE* |
Ga0182030_100535366 | 3300014838 | Bog | MVEGLVMMQAVDSYIGPQVETLVVLLGVFIGIMVWGFFQRHHFK* |
Ga0182030_117321542 | 3300014838 | Bog | MFGVDNYFGPQVETLVILLGTLFGVVIWGYFQRHGPE* |
Ga0167666_10225363 | 3300015194 | Glacier Forefield Soil | LVAVMHAVDSYIGPQVQTMVVLLGVLFGVIIWGFFQRHPSE* |
Ga0187853_105504782 | 3300017940 | Peatland | MHSVDSYIGPQIETMAILLGTLFVVLIWGFFQRHHSE |
Ga0187879_105673332 | 3300017946 | Peatland | MPGGDSFIGPQIETMVILLGTLFVVIIWGFFQRHRPE |
Ga0187847_100208074 | 3300017948 | Peatland | MVEGLVMMQAVDSYIGAQVQTLVVLLGVFIGIMVWGFFQRHHFK |
Ga0187875_103102062 | 3300018035 | Peatland | MVEGLVMMQAVDIYIGAQVQTMVVLLGVFIGIMVWGFFQRHHFK |
Ga0187871_103204862 | 3300018042 | Peatland | MPGVDSYIGPQVETMVILLGTLFVVLIWGFFQRHHSE |
Ga0187887_100312483 | 3300018043 | Peatland | MVEGLVMMQAVDSYIGPQVETLVVLLGVFIGIMVWGFFQRHHFK |
Ga0187851_104307582 | 3300018046 | Peatland | MMTGVDSFIGPQVETMVILLGTLFVVVIWGFFQRHRS |
Ga0187771_110035822 | 3300018088 | Tropical Peatland | MSATDTYLGAQVQTMVVLLGVLVGVLLWGFFQRHPTE |
Ga0181502_13021791 | 3300019242 | Peatland | MQAVDTYFGAQAQTMVVLLGVFVAVILWGFFQRHSSE |
Ga0182025_13825312 | 3300019786 | Permafrost | MMQAVDSYIGPQVETLVVLLGVFIGVMVWGFFQRHHFK |
Ga0182031_10336252 | 3300019787 | Bog | MPGVDSYIGPQVETMVILLGTLFVVVIWGFFQRHHSE |
Ga0182031_10450231 | 3300019787 | Bog | VMPVGVVVMPGVDSYIGPQVETMVILLGTLFVVVIWGFFQRHHSE |
Ga0182031_10853513 | 3300019787 | Bog | MAGVDSFIGPQVETMVILLGTLFVVVIWGFFQRHHSE |
Ga0182031_14979133 | 3300019787 | Bog | MFGIDNYIGPQVETLVILLGTLFGVLIWGYFQSHHPK |
Ga0210400_105021472 | 3300021170 | Soil | VVVIPGVDNFIGPQVETLVILLGTLFGVLIWGFFQSHHSE |
Ga0210383_106667681 | 3300021407 | Soil | MPGVDSYIGPQVETLVILLGTLFAVVIWGFFQRHHSE |
Ga0213850_12118303 | 3300021856 | Watersheds | MMQAVDIYIGPQVQTMVVLLGVLFGVLIWGFFQRHPSE |
Ga0224548_10126532 | 3300022518 | Soil | MTGVDSYIGPQVETLVILLGTLFAVMIWGFFQRHHSE |
Ga0224534_100002650 | 3300022524 | Soil | MQGIDIYIGPQVQTMVVLLGVFIGVVLWGFFQRRPSE |
Ga0224551_10113323 | 3300023259 | Soil | MTGVDSFIGPQVETLVILLGTLFAVLIWGLFQRHHSE |
Ga0224551_10144341 | 3300023259 | Soil | FCGSTVEGLVMMQAVDIYIGAQVQTLVVLLGVFIGVCFWGFFQRHHFK |
Ga0224556_10071113 | 3300024295 | Soil | MTGVDSFIGPQVETMVILLGTLFVVVIWGFFQRHHSE |
Ga0208585_10188942 | 3300025386 | Arctic Peat Soil | MMTGVDSFIGPQVETMVILLGTLFGVIIWGFFQRHRSE |
Ga0208077_10522062 | 3300025427 | Arctic Peat Soil | VVVIPGVDSYIGPQVETMVILLGTLFVVVIWGFFQHHSE |
Ga0208850_10000042 | 3300025457 | Arctic Peat Soil | MLGVDPFIGPQVQTMVVLLGVFFAVVIWGFFQRNHSE |
Ga0207932_10440692 | 3300025495 | Arctic Peat Soil | MMQAVDQFIGPQVQTMVVLLGVLCAVLIWGFFQRHPSE |
Ga0208356_10257992 | 3300025504 | Arctic Peat Soil | MMSGVDNFIGPQVETMVILLGTLFVVIIWGFFQRHSSE |
Ga0208356_10902592 | 3300025504 | Arctic Peat Soil | MPGVDSFIGPQVETMVILLGTLFVVIIWGFFQRHHSE |
Ga0208717_10042426 | 3300025574 | Arctic Peat Soil | MSGVDNFIGPQVETMVILLGTLFVVIIWGFFQRHSSE |
Ga0207927_10004637 | 3300025579 | Arctic Peat Soil | MMQAVDIYIGPQVQTMVVLLGVLCGLMVWGFFQRHPSE |
Ga0208586_1000001127 | 3300025588 | Arctic Peat Soil | VVVKHAVDSFIGPQVETLVILLGTFFAVVIWGFFQRHHPE |
Ga0208586_10009416 | 3300025588 | Arctic Peat Soil | MPGVDSFIGPQVETMVILLGTLFVVVIWGFFQRHRSE |
Ga0207930_10539372 | 3300025604 | Arctic Peat Soil | MMQAVDIYIGPQVQTMVVLLGVFCAVLVWGFFQRHHSE |
Ga0208480_10019818 | 3300025633 | Arctic Peat Soil | MHSVDSYIGPQVETMVILLGTLFVVVIWGFFQRHHSE |
Ga0209385_10114575 | 3300025650 | Arctic Peat Soil | MPGVDSFIGPQVETMVILLGTLTVVIIWGFFQRHRSE |
Ga0208849_10153212 | 3300025664 | Arctic Peat Soil | MQAVDIYIGPQVQSMVVLLGVLFGVVLWGFFQRQPSE |
Ga0207933_10607092 | 3300025679 | Arctic Peat Soil | MHSVDIYIGPQIQSLVVPLGVLFGVILWGFFQRQPSE |
Ga0207933_10854772 | 3300025679 | Arctic Peat Soil | MPGVDSFIGPQVETMVILLGTLFAVAIWGFFQRHHSE |
Ga0208357_100089019 | 3300025703 | Arctic Peat Soil | MHSLDIYIGPQIQTLVVPLGVLFGVVLWGFFQRQPSE |
Ga0208357_11937581 | 3300025703 | Arctic Peat Soil | TMLSVDNFIGPQVETLVVLLGTFILVVLWGFFQRHHSE |
Ga0209483_10292233 | 3300025862 | Arctic Peat Soil | MLGVDSYIGPQVQTLVVLLGTFFGVIIWLFFQRKHSE |
Ga0209540_106099552 | 3300025888 | Arctic Peat Soil | MMQAVDIYIGPQVQTMVVLLGVLCAVLIWGFFQRHPSE |
Ga0208565_10861672 | 3300027662 | Peatlands Soil | VEVQAVDIYIGPQVQTLVVLLGVFFAVCLWGFFQRHPSE |
Ga0209448_102271292 | 3300027783 | Bog Forest Soil | LVGEEVEMQAVDPYIGPQVQTLVVLLGVFFAVCLWGFFQRHPSE |
Ga0209415_1000025325 | 3300027905 | Peatlands Soil | VQAVDIYIGPQVQTLVVLLGVFFAVCLWGFFQRHPSE |
Ga0209415_100191153 | 3300027905 | Peatlands Soil | MFGVNPYIGSQVESMVILLGVFFAVTIWLYFQRHRAE |
Ga0209168_101684072 | 3300027986 | Surface Soil | VLAGDIYIGPEVQTMVVLLGVFAAVCLWGFFQRRPSE |
Ga0302149_10088042 | 3300028552 | Bog | MFGVDSYIGPQVETILILLGTLFGVIIWGIFQRHGPE |
Ga0302151_102264932 | 3300028562 | Bog | MFGVDSYIGPQVETLVILLGTLFGVIIWGFFQRHGPE |
Ga0302265_11575451 | 3300028859 | Bog | GVVMHSVDSYIGPQIETMAILLGTLFVVLIWGFFQRHHSE |
Ga0311363_106279992 | 3300029922 | Fen | MQAVDPFIGSQVLTMVLLLGVLVGVIVWGFFQRHPSE |
Ga0302270_100202754 | 3300030011 | Bog | MQAVDTYFGAQAQTMVVLLGVFVPVILWGFFQRHSSE |
Ga0311344_100632884 | 3300030020 | Bog | MMTGVDSFIGPQVETMVILLGTLFVVVIWGFFQRHRSE |
Ga0302275_100327841 | 3300030518 | Bog | QAVDTYFGAQAQTMVVLLGVFVAVILWGFFQRHSSE |
Ga0307919_10004642 | 3300030718 | Soil | MMLGVDNFIGPQIQTLVVLLGVFFGVCIWGFFQRHHSE |
Ga0307919_10168552 | 3300030718 | Soil | MMQGIDNFIGPEVQTMVVLLGVLFGVVIWGFFQRHHSE |
Ga0307919_10605012 | 3300030718 | Soil | VVMLGVDSFIGPQVLTLVVLLGTLFGVGVWLFFQRRPSE |
Ga0302140_1000164230 | 3300031261 | Bog | MQAVDTYFCAQAQTMVVLLGVFVAVILWGFFQRHSSE |
Ga0307376_103161192 | 3300031578 | Soil | VVVMMQGVDNFIGPQVQTMVVLLGVLFGVLIWGFFQRRPSK |
Ga0307375_10000071104 | 3300031669 | Soil | MMQGVDNFIGPQVQTMVVLLGVLFGVLIWGFFQRRPSK |
Ga0307375_1000065925 | 3300031669 | Soil | MMQAVDNYIGAQVQTMVVLLGVLVAVVLWGFFQRHPSE |
Ga0307375_100831151 | 3300031669 | Soil | MQAVDNYIGAQVQTMVVLLGVLVAVVLWGFFQRHPSE |
Ga0307375_101700672 | 3300031669 | Soil | VVTNVQGVDIYIGPQVQTMVVLLGVLFGVIIWGFFQRHPSE |
Ga0307375_102617071 | 3300031669 | Soil | AVDIYIGSQVLTMVLLLGVLFGVLLWGFFQRHPSE |
Ga0307374_1000443615 | 3300031670 | Soil | MMQGIDNFIGPEVQTMVVLLGVFFGVVIWGFFQRHHSE |
Ga0307374_100212074 | 3300031670 | Soil | MMQGIDNFIGPEVQTMVVLLGVLFGVIIWGFFQRHHSE |
Ga0307374_100891222 | 3300031670 | Soil | MPGVDSYIGPQIETLVILLGTLFVVLIWGFFQRHPSE |
Ga0307374_103389882 | 3300031670 | Soil | MPGVDSFIGPQVETMVILLGTLFVVVIWGFFQRHHSE |
Ga0307374_105166022 | 3300031670 | Soil | MLGADGYIGAQVQTMVVLLGVLFGVLIWGFFQRRPSK |
Ga0311301_100528872 | 3300032160 | Peatlands Soil | MFGLDPYIGPEVETMVILLGVFFGVVIWLFFQRPRAE |
Ga0334828_001596_260_382 | 3300033822 | Soil | VVVMQGIDIYIGPQVQTMVVLLGVFIGVVLWGFFQRRPSE |
Ga0334790_001533_822_935 | 3300033887 | Soil | MPGVDSFIGPQVETMVILLGTLFVVIIWGFFQRHRSE |
Ga0370483_0064761_632_745 | 3300034124 | Untreated Peat Soil | MTGVDSFIGPQVETMVILLGTLFVVVIWGFFQRHRSE |
Ga0370492_0003502_4554_4670 | 3300034282 | Untreated Peat Soil | MMPGVDSFIGPQVETMVILLGTLFVVVIWGFFQRHRSE |
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