Metagenome / Metatranscriptome Family F065249

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F065249
Family Type	Metagenome / Metatranscriptome
Number of Sequences	128
Average Sequence Length	38 residues
Representative Sequence	MQAVDSFIGPQVQTMVVLLGVLFGVLIWGFFQRHHSE
Number of Associated Samples	88
Number of Associated Scaffolds	128

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	86.99 %
% of genes near scaffold ends (potentially truncated)	8.59 %
% of genes from short scaffolds (< 2000 bps)	52.34 %
Associated GOLD sequencing projects	75
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.52

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (82.031 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Permafrost → Arctic Peat Soil (22.656 % of family members)
Environment Ontology (ENVO)	Unclassified (47.656 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (60.156 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Transmembrane (alpha-helical)	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 43.08% β-sheet: 0.00% Coil/Unstructured: 56.92%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.52
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.52
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 128 Family Scaffolds
PF09678	Caa3_CtaG	35.16
PF00115	COX1	13.28
PF00116	COX2	3.91
PF02630	SCO1-SenC	2.34
PF01029	NusB	1.56
PF02787	CPSase_L_D3	1.56
PF08245	Mur_ligase_M	0.78
PF09285	Elong-fact-P_C	0.78
PF10604	Polyketide_cyc2	0.78
PF02894	GFO_IDH_MocA_C	0.78
PF02773	S-AdoMet_synt_C	0.78
PF00884	Sulfatase	0.78
PF02912	Phe_tRNA-synt_N	0.78
PF03190	Thioredox_DsbH	0.78
PF02782	FGGY_C	0.78
PF03069	FmdA_AmdA	0.78
PF00392	GntR	0.78
PF00156	Pribosyltran	0.78
PF01220	DHquinase_II	0.78
PF12890	DHOase	0.78
PF00578	AhpC-TSA	0.78
PF01761	DHQ_synthase	0.78
PF13474	SnoaL_3	0.78

COG ID	Name	Functional Category	% Frequency in 128 Family Scaffolds
COG1622	Heme/copper-type cytochrome/quinol oxidase, subunit 2	Energy production and conversion [C]	3.91
COG4263	Nitrous oxide reductase	Inorganic ion transport and metabolism [P]	3.91
COG1225	Peroxiredoxin	Posttranslational modification, protein turnover, chaperones [O]	2.34
COG1999	Cytochrome oxidase Cu insertion factor, SCO1/SenC/PrrC family	Posttranslational modification, protein turnover, chaperones [O]	2.34
COG0016	Phenylalanyl-tRNA synthetase alpha subunit	Translation, ribosomal structure and biogenesis [J]	0.78
COG0192	S-adenosylmethionine synthetase	Coenzyme transport and metabolism [H]	0.78
COG0673	Predicted dehydrogenase	General function prediction only [R]	0.78
COG0757	3-dehydroquinate dehydratase	Amino acid transport and metabolism [E]	0.78
COG1331	Uncharacterized conserved protein YyaL, SSP411 family, contains thoiredoxin and six-hairpin glycosidase-like domains	General function prediction only [R]	0.78
COG2421	Acetamidase/formamidase	Energy production and conversion [C]	0.78

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	82.03 %
Unclassified	root	N/A	17.97 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	82.03 %
Unclassified	root	N/A	17.97 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	82.03 %
Unclassified	root	N/A	17.97 %

Name	Rank	Taxonomy	Distribution
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	75.00 %
Unclassified	root	N/A	17.97 %

Name	Rank	Taxonomy	Distribution
Actinobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	75.00 %
Unclassified	root	N/A	17.97 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	17.97 %
Acidimicrobiia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Acidimicrobiia	17.19 %
unclassified Actinobacteria	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → unclassified Actinobacteria	7.03 %
Actinomycetia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1.56 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	17.97 %
Acidimicrobiales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Acidimicrobiia → Acidimicrobiales	17.19 %
Actinobacteria bacterium 21-73-9	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → unclassified Actinobacteria → Actinobacteria bacterium 21-73-9	7.03 %
Actinomycetia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1.56 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	17.97 %
Acidimicrobiaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Acidimicrobiia → Acidimicrobiales → Acidimicrobiaceae	16.41 %
Actinobacteria bacterium 21-73-9	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → unclassified Actinobacteria → Actinobacteria bacterium 21-73-9	7.03 %
Actinomycetia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1.56 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	17.97 %
unclassified Acidimicrobiaceae	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Acidimicrobiia → Acidimicrobiales → Acidimicrobiaceae → unclassified Acidimicrobiaceae	13.28 %
Actinobacteria bacterium 21-73-9	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → unclassified Actinobacteria → Actinobacteria bacterium 21-73-9	7.03 %
Acidimicrobium	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Acidimicrobiia → Acidimicrobiales → Acidimicrobiaceae → Acidimicrobium	2.34 %
Actinomycetia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1.56 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	17.97 %
Acidimicrobiaceae bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Acidimicrobiia → Acidimicrobiales → Acidimicrobiaceae → unclassified Acidimicrobiaceae → Acidimicrobiaceae bacterium	13.28 %
Actinobacteria bacterium 21-73-9	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → unclassified Actinobacteria → Actinobacteria bacterium 21-73-9	7.03 %
Acidimicrobium ferrooxidans	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Acidimicrobiia → Acidimicrobiales → Acidimicrobiaceae → Acidimicrobium → Acidimicrobium ferrooxidans	2.34 %
Actinomycetia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1.56 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300001356\|JGI12269J14319_10033199	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	3384	Open in IMG/M
3300001384\|JGI20190J14840_1004027	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → unclassified Actinobacteria → Actinobacteria bacterium 21-73-9	1674	Open in IMG/M
3300001401\|JGI20189J14885_1007348	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Acidimicrobiia → Acidimicrobiales → Acidimicrobiaceae → unclassified Acidimicrobiaceae → Acidimicrobiaceae bacterium	1883	Open in IMG/M
3300001408\|JGI20206J14855_1049887	Not Available	605	Open in IMG/M
3300001415\|JGI20184J14884_102786	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	584	Open in IMG/M
3300001471\|JGI12712J15308_10001847	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Acidimicrobiia → Acidimicrobiales → Acidimicrobiaceae → Acidimicrobium → Acidimicrobium ferrooxidans	6375	Open in IMG/M
3300005534\|Ga0070735_10046252	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	2909	Open in IMG/M
3300005541\|Ga0070733_11002847	Not Available	561	Open in IMG/M
3300005994\|Ga0066789_10505281	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	505	Open in IMG/M
3300006052\|Ga0075029_100001486	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	13445	Open in IMG/M
3300006052\|Ga0075029_100733563	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	668	Open in IMG/M
3300006059\|Ga0075017_100002596	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	11330	Open in IMG/M
3300006059\|Ga0075017_100083546	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	2202	Open in IMG/M
3300006059\|Ga0075017_100226037	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Acidimicrobiia → Acidimicrobiales → Acidimicrobiaceae → unclassified Acidimicrobiaceae → Acidimicrobiaceae bacterium	1361	Open in IMG/M
3300006059\|Ga0075017_100232341	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Acidimicrobiia → Acidimicrobiales → Acidimicrobiaceae → unclassified Acidimicrobiaceae → Acidimicrobiaceae bacterium	1344	Open in IMG/M
3300006086\|Ga0075019_10717001	Not Available	633	Open in IMG/M
3300006086\|Ga0075019_10742956	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	622	Open in IMG/M
3300006102\|Ga0075015_100023953	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	2730	Open in IMG/M
3300006638\|Ga0075522_10002462	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Acidimicrobiia → Acidimicrobiales	13712	Open in IMG/M
3300006638\|Ga0075522_10005125	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	9279	Open in IMG/M
3300006795\|Ga0075520_1012106	All Organisms → cellular organisms → Bacteria	4348	Open in IMG/M
3300006795\|Ga0075520_1023407	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → unclassified Actinobacteria → Actinobacteria bacterium 21-73-9	3077	Open in IMG/M
3300006949\|Ga0075528_10232361	Not Available	504	Open in IMG/M
3300009628\|Ga0116125_1112827	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	733	Open in IMG/M
3300009635\|Ga0116117_1051970	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1009	Open in IMG/M
3300009672\|Ga0116215_1096199	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Acidimicrobiia → Acidimicrobiales → Acidimicrobiaceae → unclassified Acidimicrobiaceae → Acidimicrobiaceae bacterium	1327	Open in IMG/M
3300010379\|Ga0136449_101139483	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1236	Open in IMG/M
3300010386\|Ga0136806_1269697	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	869	Open in IMG/M
3300010387\|Ga0136821_1297472	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Acidimicrobiia → Acidimicrobiales → Acidimicrobiaceae → unclassified Acidimicrobiaceae → Acidimicrobiaceae bacterium	717	Open in IMG/M
3300014167\|Ga0181528_10115805	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → unclassified Actinobacteria → Actinobacteria bacterium 21-73-9	1455	Open in IMG/M
3300014167\|Ga0181528_10162513	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1208	Open in IMG/M
3300014489\|Ga0182018_10025292	All Organisms → cellular organisms → Bacteria	3849	Open in IMG/M
3300014492\|Ga0182013_10000234	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	75597	Open in IMG/M
3300014492\|Ga0182013_10265379	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Acidimicrobiia → Acidimicrobiales → Acidimicrobiaceae → unclassified Acidimicrobiaceae → Acidimicrobiaceae bacterium	984	Open in IMG/M
3300014493\|Ga0182016_10027264	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Acidimicrobiia → Acidimicrobiales → Acidimicrobiaceae → unclassified Acidimicrobiaceae → Acidimicrobiaceae bacterium	4899	Open in IMG/M
3300014493\|Ga0182016_10031996	All Organisms → cellular organisms → Bacteria	4413	Open in IMG/M
3300014493\|Ga0182016_10533553	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	674	Open in IMG/M
3300014499\|Ga0182012_10000177	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	70812	Open in IMG/M
3300014501\|Ga0182024_10000272	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	129944	Open in IMG/M
3300014501\|Ga0182024_10008420	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	21754	Open in IMG/M
3300014501\|Ga0182024_10010712	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	18633	Open in IMG/M
3300014501\|Ga0182024_10011889	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	17358	Open in IMG/M
3300014501\|Ga0182024_10273189	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Acidimicrobiia → Acidimicrobiales → Acidimicrobiaceae → unclassified Acidimicrobiaceae → Acidimicrobiaceae bacterium	2250	Open in IMG/M
3300014501\|Ga0182024_10972561	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Acidimicrobiia → Acidimicrobiales → Acidimicrobiaceae → unclassified Acidimicrobiaceae → Acidimicrobiaceae bacterium	1015	Open in IMG/M
3300014654\|Ga0181525_10005022	All Organisms → cellular organisms → Bacteria	9965	Open in IMG/M
3300014657\|Ga0181522_10037473	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	2700	Open in IMG/M
3300014657\|Ga0181522_10458162	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Acidimicrobiia → Acidimicrobiales → Acidimicrobiaceae → unclassified Acidimicrobiaceae → Acidimicrobiaceae bacterium	766	Open in IMG/M
3300014838\|Ga0182030_10001395	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	49721	Open in IMG/M
3300014838\|Ga0182030_10053536	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Acidimicrobiia → Acidimicrobiales → Acidimicrobiaceae → Acidimicrobium → Acidimicrobium ferrooxidans	6358	Open in IMG/M
3300014838\|Ga0182030_11732154	Not Available	505	Open in IMG/M
3300015194\|Ga0167666_1022536	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1731	Open in IMG/M
3300017940\|Ga0187853_10550478	Not Available	500	Open in IMG/M
3300017946\|Ga0187879_10567333	Not Available	630	Open in IMG/M
3300017948\|Ga0187847_10020807	All Organisms → cellular organisms → Bacteria	4055	Open in IMG/M
3300018035\|Ga0187875_10310206	Not Available	852	Open in IMG/M
3300018042\|Ga0187871_10320486	Not Available	857	Open in IMG/M
3300018043\|Ga0187887_10031248	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	3349	Open in IMG/M
3300018046\|Ga0187851_10430758	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	753	Open in IMG/M
3300018088\|Ga0187771_11003582	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	708	Open in IMG/M
3300019242\|Ga0181502_1302179	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → unclassified Actinobacteria → Actinobacteria bacterium 21-73-9	1667	Open in IMG/M
3300019786\|Ga0182025_1382531	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1659	Open in IMG/M
3300019787\|Ga0182031_1033625	Not Available	954	Open in IMG/M
3300019787\|Ga0182031_1045023	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1570	Open in IMG/M
3300019787\|Ga0182031_1085351	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → unclassified Actinobacteria → Actinobacteria bacterium 21-73-9	1740	Open in IMG/M
3300019787\|Ga0182031_1497913	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	2123	Open in IMG/M
3300021170\|Ga0210400_10502147	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1001	Open in IMG/M
3300021407\|Ga0210383_10666768	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	895	Open in IMG/M
3300021856\|Ga0213850_1211830	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → unclassified Actinobacteria → Actinobacteria bacterium 21-73-9	1421	Open in IMG/M
3300022518\|Ga0224548_1012653	Not Available	937	Open in IMG/M
3300022524\|Ga0224534_1000026	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	101658	Open in IMG/M
3300023259\|Ga0224551_1011332	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → unclassified Actinobacteria → Actinobacteria bacterium 21-73-9	1489	Open in IMG/M
3300023259\|Ga0224551_1014434	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Acidimicrobiia → Acidimicrobiales → Acidimicrobiaceae → unclassified Acidimicrobiaceae → Acidimicrobiaceae bacterium	1328	Open in IMG/M
3300024295\|Ga0224556_1007111	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → unclassified Actinobacteria → Actinobacteria bacterium 21-73-9	3018	Open in IMG/M
3300025386\|Ga0208585_1018894	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	792	Open in IMG/M
3300025427\|Ga0208077_1052206	Not Available	573	Open in IMG/M
3300025457\|Ga0208850_1000004	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	141114	Open in IMG/M
3300025495\|Ga0207932_1044069	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1039	Open in IMG/M
3300025504\|Ga0208356_1025799	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1248	Open in IMG/M
3300025504\|Ga0208356_1090259	Not Available	585	Open in IMG/M
3300025574\|Ga0208717_1004242	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	4502	Open in IMG/M
3300025579\|Ga0207927_1000463	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	17266	Open in IMG/M
3300025588\|Ga0208586_1000001	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	159678	Open in IMG/M
3300025588\|Ga0208586_1000941	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	9722	Open in IMG/M
3300025604\|Ga0207930_1053937	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	996	Open in IMG/M
3300025633\|Ga0208480_1001981	All Organisms → cellular organisms → Bacteria	7287	Open in IMG/M
3300025650\|Ga0209385_1011457	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	3698	Open in IMG/M
3300025664\|Ga0208849_1015321	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	2623	Open in IMG/M
3300025679\|Ga0207933_1060709	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Acidimicrobiia → Acidimicrobiales → Acidimicrobiaceae → unclassified Acidimicrobiaceae → Acidimicrobiaceae bacterium	1297	Open in IMG/M
3300025679\|Ga0207933_1085477	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Acidimicrobiia → Acidimicrobiales → Acidimicrobiaceae → unclassified Acidimicrobiaceae → Acidimicrobiaceae bacterium	1018	Open in IMG/M
3300025703\|Ga0208357_1000890	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	22954	Open in IMG/M
3300025703\|Ga0208357_1193758	Not Available	547	Open in IMG/M
3300025862\|Ga0209483_1029223	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	2740	Open in IMG/M
3300025888\|Ga0209540_10609955	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	549	Open in IMG/M
3300027662\|Ga0208565_1086167	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	958	Open in IMG/M
3300027783\|Ga0209448_10227129	Not Available	618	Open in IMG/M
3300027905\|Ga0209415_10000253	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	93510	Open in IMG/M
3300027986\|Ga0209168_10168407	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Acidimicrobiia → Acidimicrobiales → Acidimicrobiaceae → unclassified Acidimicrobiaceae → Acidimicrobiaceae bacterium	1105	Open in IMG/M
3300028552\|Ga0302149_1008804	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → unclassified Actinobacteria → Actinobacteria bacterium 21-73-9	2716	Open in IMG/M
3300028562\|Ga0302151_10226493	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	629	Open in IMG/M
3300028859\|Ga0302265_1157545	Not Available	702	Open in IMG/M
3300029922\|Ga0311363_10627999	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1043	Open in IMG/M
3300030011\|Ga0302270_10020275	All Organisms → cellular organisms → Bacteria	5256	Open in IMG/M
3300030020\|Ga0311344_10063288	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Acidimicrobiia → Acidimicrobiales → Acidimicrobiaceae	4462	Open in IMG/M
3300030518\|Ga0302275_10032784	All Organisms → cellular organisms → Bacteria	4145	Open in IMG/M
3300030718\|Ga0307919_1000464	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Acidimicrobiia → Acidimicrobiales → Acidimicrobiaceae → Acidimicrobium → Acidimicrobium ferrooxidans	4917	Open in IMG/M
3300030718\|Ga0307919_1016855	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	986	Open in IMG/M
3300030718\|Ga0307919_1060501	Not Available	526	Open in IMG/M
3300031261\|Ga0302140_10001642	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	29249	Open in IMG/M
3300031578\|Ga0307376_10316119	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1040	Open in IMG/M
3300031669\|Ga0307375_10000071	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	135345	Open in IMG/M
3300031669\|Ga0307375_10000659	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	41395	Open in IMG/M
3300031669\|Ga0307375_10083115	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Acidimicrobiia → Acidimicrobiales → Acidimicrobiaceae → unclassified Acidimicrobiaceae → Acidimicrobiaceae bacterium	2351	Open in IMG/M
3300031669\|Ga0307375_10170067	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Acidimicrobiia → Acidimicrobiales → Acidimicrobiaceae → unclassified Acidimicrobiaceae → Acidimicrobiaceae bacterium	1490	Open in IMG/M
3300031669\|Ga0307375_10261707	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Acidimicrobiia → Acidimicrobiales → Acidimicrobiaceae → unclassified Acidimicrobiaceae → Acidimicrobiaceae bacterium	1127	Open in IMG/M
3300031670\|Ga0307374_10004436	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	23377	Open in IMG/M
3300031670\|Ga0307374_10021207	All Organisms → cellular organisms → Bacteria	8193	Open in IMG/M
3300031670\|Ga0307374_10089122	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	2767	Open in IMG/M
3300031670\|Ga0307374_10338988	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	916	Open in IMG/M
3300031670\|Ga0307374_10516602	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	636	Open in IMG/M
3300033822\|Ga0334828_001596	Not Available	11156	Open in IMG/M
3300033887\|Ga0334790_001533	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	19328	Open in IMG/M
3300034124\|Ga0370483_0064761	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1170	Open in IMG/M
3300034282\|Ga0370492_0003502	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	6307	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	100.00%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	78.12%
Aquatic	Environmental → Aquatic	21.88%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	66.41%
Freshwater	Environmental → Aquatic → Freshwater	14.84%
Peat	Environmental → Terrestrial → Peat	11.72%
Sediment	Environmental → Aquatic → Sediment	7.03%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	35.16%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	19.53%
Wetlands	Environmental → Aquatic → Freshwater → Wetlands	12.50%
Unclassified	Environmental → Terrestrial → Peat → Unclassified	11.72%
Clay	Environmental → Terrestrial → Soil → Clay	10.94%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	7.03%
Groundwater	Environmental → Aquatic → Freshwater → Groundwater	1.56%
Sediment	Environmental → Aquatic → Freshwater → Sediment	0.78%
Loam	Environmental → Terrestrial → Soil → Loam	0.78%

Habitat	Taxonomy	Distribution
Permafrost	Environmental → Terrestrial → Soil → Unclassified → Permafrost	22.66%
Permafrost	Environmental → Terrestrial → Soil → Wetlands → Permafrost	17.19%
Unclassified	Environmental → Terrestrial → Peat → Unclassified → Unclassified	11.72%
Bog	Environmental → Aquatic → Freshwater → Wetlands → Bog	10.94%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	10.94%
Unclassified	Environmental → Terrestrial → Soil → Clay → Unclassified	10.94%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	7.03%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	2.34%
Unclassified	Environmental → Aquatic → Freshwater → Wetlands → Unclassified	1.56%
Mine Drainage	Environmental → Aquatic → Freshwater → Groundwater → Mine Drainage	1.56%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	1.56%
Unclassified	Environmental → Aquatic → Freshwater → Sediment → Unclassified	0.78%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	0.78%

Habitat	Taxonomy	Distribution
Arctic Peat Soil	Environmental → Terrestrial → Soil → Unclassified → Permafrost → Arctic Peat Soil	22.66%
Soil	Environmental → Terrestrial → Soil → Clay → Unclassified → Soil	10.94%
Bog	Environmental → Terrestrial → Soil → Wetlands → Permafrost → Bog	10.16%
Peatlands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Peatlands Soil	7.81%
Watersheds	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Watersheds	7.03%
Peatland	Environmental → Aquatic → Freshwater → Wetlands → Bog → Peatland	6.25%
Permafrost	Environmental → Terrestrial → Soil → Wetlands → Permafrost → Permafrost	5.47%
Soil	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Soil	5.47%
Bog	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Bog	5.47%
Bog	Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog	3.91%
Surface Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil	2.34%
Peatland	Environmental → Aquatic → Freshwater → Wetlands → Unclassified → Peatland	1.56%
Sediment	Environmental → Aquatic → Freshwater → Groundwater → Mine Drainage → Sediment	1.56%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	1.56%
Untreated Peat Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Untreated Peat Soil	1.56%
Watersheds	Environmental → Aquatic → Freshwater → Sediment → Unclassified → Watersheds	0.78%
Bog Forest Soil	Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog Forest Soil	0.78%
Glacier Forefield Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Glacier Forefield Soil	0.78%
Tropical Peatland	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Tropical Peatland	0.78%
Soil	Environmental → Terrestrial → Soil → Wetlands → Permafrost → Soil	0.78%
Palsa	Environmental → Terrestrial → Soil → Wetlands → Permafrost → Palsa	0.78%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil	0.78%
Fen	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Fen	0.78%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300001356	Peat soil microbial communities from Weissenstadt, Germany - SII-SIP-2007	Environmental	Open in IMG/M
3300001384	Arctic peat soil from Barrow, Alaska - NGEE Surface sample 53-3 shallow-072012	Environmental	Open in IMG/M
3300001401	Arctic peat soil from Barrow, Alaska - NGEE Surface sample 53-3 deep-072012	Environmental	Open in IMG/M
3300001408	Arctic peat soil from Barrow, Alaska - NGEE Surface sample F52-2 deep-092012	Environmental	Open in IMG/M
3300001415	Arctic peat soil from Barrow, Alaska - NGEE Surface sample 415-3 shallow-072012	Environmental	Open in IMG/M
3300001471	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_Ref_O2	Environmental	Open in IMG/M
3300005534	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen07_05102014_R1	Environmental	Open in IMG/M
3300005541	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen05_05102014_R1	Environmental	Open in IMG/M
3300005994	Permafrost soil microbial communities from the Arctic, to analyse light accelerated degradation of dissolved organic matter (DOM) - Organic soil replicate 3 DNA2013-049	Environmental	Open in IMG/M
3300006052	Freshwater sediment microbial communities from North America - Little Laurel Run_MetaG_LLR_2013	Environmental	Open in IMG/M
3300006059	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Alex Branch Run_MetaG_ABR_2012	Environmental	Open in IMG/M
3300006086	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Cold Stream Run_MetaG_CSR_2013	Environmental	Open in IMG/M
3300006102	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Alex Branch Run_MetaG_ABR_2013	Environmental	Open in IMG/M
3300006638	Arctic peat soil microbial communities from the Barrow Environmental Observatory site, Barrow, Alaska, USA - NGEE PermafrostL2-A	Environmental	Open in IMG/M
3300006795	Arctic peat soil microbial communities from the Barrow Environmental Observatory site, Barrow, Alaska, USA - NGEE PermafrostAB12-B	Environmental	Open in IMG/M
3300006949	Arctic peat soil microbial communities from the Barrow Environmental Observatory site, Barrow, Alaska, USA - NGEE Permafrost159B-16B	Environmental	Open in IMG/M
3300009628	Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_16_10	Environmental	Open in IMG/M
3300009635	Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_11_10	Environmental	Open in IMG/M
3300009672	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_2_FS metaG	Environmental	Open in IMG/M
3300009700	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_4_PS metaG	Environmental	Open in IMG/M
3300010379	Sb_50d combined assembly	Environmental	Open in IMG/M
3300010386	Acid mine drainage microbial communities from Malanjkhand copper mine, India - M8 kmer 63	Environmental	Open in IMG/M
3300010387	Acid mine drainage microbial communities from Malanjkhand copper mine, India - M8 k-mer 51	Environmental	Open in IMG/M
3300014167	Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin10_10_metaG	Environmental	Open in IMG/M
3300014489	Permafrost microbial communities from Stordalen Mire, Sweden - 812P2M metaG	Environmental	Open in IMG/M
3300014492	Permafrost microbial communities from Stordalen Mire, Sweden - 612S2M metaG	Environmental	Open in IMG/M
3300014493	Permafrost microbial communities from Stordalen Mire, Sweden - 712S2M metaG	Environmental	Open in IMG/M
3300014499	Permafrost microbial communities from Stordalen Mire, Sweden - 612S2S metaG	Environmental	Open in IMG/M
3300014501	Permafrost microbial communities from Stordalen Mire, Sweden - P3-2 metaG (Illumina Assembly)	Environmental	Open in IMG/M
3300014654	Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin06_10_metaG	Environmental	Open in IMG/M
3300014657	Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin05_10_metaG	Environmental	Open in IMG/M
3300014838	Permafrost microbial communities from Stordalen Mire, Sweden - 812S3M metaG (Illumina Assembly)	Environmental	Open in IMG/M
3300015194	Arctic soil microbial communities from a glacier forefield, Rabots glacier, Tarfala, Sweden (Sample Rb1c, glacier snout)	Environmental	Open in IMG/M
3300017940	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_6_100	Environmental	Open in IMG/M
3300017946	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_19_10	Environmental	Open in IMG/M
3300017948	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_4_10	Environmental	Open in IMG/M
3300018035	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_17_10	Environmental	Open in IMG/M
3300018042	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_16_10	Environmental	Open in IMG/M
3300018043	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_7_10	Environmental	Open in IMG/M
3300018046	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_6_10	Environmental	Open in IMG/M
3300018088	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0116_SJ02_MP15_10_MG	Environmental	Open in IMG/M
3300019242	Metatranscriptome of peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin02_10_metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300019786	Permafrost microbial communities from Stordalen Mire, Sweden - P3-2 metaG (PacBio error correction)	Environmental	Open in IMG/M
3300019787	Permafrost microbial communities from Stordalen Mire, Sweden - 812S3M metaG (PacBio error correction)	Environmental	Open in IMG/M
3300021170	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-26-M	Environmental	Open in IMG/M
3300021407	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-14-O	Environmental	Open in IMG/M
3300021856	Metatranscriptome of freshwater microbial communities from post-fracked creek in Pennsylvania, United States - LL:C (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300022518	Peat soil microbial communities from Stordalen Mire, Sweden - 717 P2 20-24	Environmental	Open in IMG/M
3300022524	Peat soil microbial communities from Stordalen Mire, Sweden - 717 E1 20-24	Environmental	Open in IMG/M
3300023259	Peat soil microbial communities from Stordalen Mire, Sweden - 717 P3 20-24	Environmental	Open in IMG/M
3300024295	Peat soil microbial communities from Stordalen Mire, Sweden - 717 S3 1-5	Environmental	Open in IMG/M
3300025386	Arctic peat soil from Barrow, Alaska - NGEE Surface sample 415-3 shallow-072012 (SPAdes)	Environmental	Open in IMG/M
3300025427	Arctic peat soil from Barrow, Alaska - NGEE Surface sample 415-2 shallow-072012 (SPAdes)	Environmental	Open in IMG/M
3300025457	Arctic peat soil from Barrow, Alaska - NGEE Surface sample 210-2 shallow-092012 (SPAdes)	Environmental	Open in IMG/M
3300025495	Arctic peat soil from Barrow, Alaska - NGEE Surface sample 415-2 deep-092012 (SPAdes)	Environmental	Open in IMG/M
3300025504	Arctic peat soil from Barrow, Alaska - NGEE Surface sample 53-1 shallow-072012 (SPAdes)	Environmental	Open in IMG/M
3300025574	Arctic peat soil from Barrow, Alaska - NGEE Surface sample F53-3 shallow (SPAdes)	Environmental	Open in IMG/M
3300025579	Arctic peat soil from Barrow, Alaska - NGEE Surface sample 210-2 deep-072012 (SPAdes)	Environmental	Open in IMG/M
3300025588	Arctic peat soil from Barrow, Alaska - NGEE Surface sample 53-3 shallow-072012 (SPAdes)	Environmental	Open in IMG/M
3300025604	Arctic peat soil from Barrow, Alaska - NGEE Surface sample 210-3 shallow-092012 (SPAdes)	Environmental	Open in IMG/M
3300025633	Arctic peat soil from Barrow, Alaska - NGEE Surface sample F53-1 shallow-092012 (SPAdes)	Environmental	Open in IMG/M
3300025650	Arctic peat soil microbial communities from the Barrow Environmental Observatory site, Barrow, Alaska, USA - NGEE PermafrostAB12-B (SPAdes)	Environmental	Open in IMG/M
3300025664	Arctic peat soil from Barrow, Alaska - NGEE Surface sample 53-3 deep-072012 (SPAdes)	Environmental	Open in IMG/M
3300025679	Arctic peat soil from Barrow, Alaska - NGEE Surface sample F53-3 deep-092012 (SPAdes)	Environmental	Open in IMG/M
3300025703	Arctic peat soil from Barrow, Alaska - NGEE Surface sample F52-2 deep-092012 (SPAdes)	Environmental	Open in IMG/M
3300025862	Arctic peat soil microbial communities from the Barrow Environmental Observatory site, Barrow, Alaska, USA - NGEE PermafrostL2-A (SPAdes)	Environmental	Open in IMG/M
3300025888	Arctic peat soil from Barrow, Alaska - Barrow Graham LP Incubations 011-21A (SPAdes)	Environmental	Open in IMG/M
3300027662	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_2_FS metaG (SPAdes)	Environmental	Open in IMG/M
3300027783	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP14_OM2 (SPAdes)	Environmental	Open in IMG/M
3300027905	Peat soil microbial communities from Weissenstadt, Germany - SII-SIP-2007 (SPAdes)	Environmental	Open in IMG/M
3300027986	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen07_05102014_R1 (SPAdes)	Environmental	Open in IMG/M
3300028552	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - I_Bog_N1_1	Environmental	Open in IMG/M
3300028562	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - I_Bog_N1_3	Environmental	Open in IMG/M
3300028859	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - III_Bog_E1_1	Environmental	Open in IMG/M
3300029922	III_Fen_E1 coassembly	Environmental	Open in IMG/M
3300030011	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - III_Bog_E2_3	Environmental	Open in IMG/M
3300030020	II_Bog_N1 coassembly	Environmental	Open in IMG/M
3300030518	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - III_Bog_N2_2	Environmental	Open in IMG/M
3300030718	Metatranscriptome of soil microbial communities from Risofladan, Vaasa, Finland - OX-1 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300031261	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - I_Bog_E1_1	Environmental	Open in IMG/M
3300031578	Soil microbial communities from Risofladan, Vaasa, Finland - TR-2	Environmental	Open in IMG/M
3300031669	Soil microbial communities from Risofladan, Vaasa, Finland - TR-1	Environmental	Open in IMG/M
3300031670	Soil microbial communities from Risofladan, Vaasa, Finland - OX-3	Environmental	Open in IMG/M
3300032160	Sb_50d combined assembly (MetaSPAdes)	Environmental	Open in IMG/M
3300033822	Peat soil microbial communities from Stordalen Mire, Sweden - 714 S1 5-9	Environmental	Open in IMG/M
3300033887	Peat soil microbial communities from Stordalen Mire, Sweden - 713 P-1-X1	Environmental	Open in IMG/M
3300034124	Peat soil microbial communities from wetlands in Alaska, United States - Goldstream_06D_14	Environmental	Open in IMG/M
3300034282	Peat soil microbial communities from wetlands in Alaska, United States - Eight_mile_03D_16	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
JGI12269J14319_100331994	3300001356	Peatlands Soil	VQAVDIYIGPQVQTLVVLLGVFFAVCLWGFFQRHPSE*
JGI12269J14319_101659482	3300001356	Peatlands Soil	MFGLDPYIGPEVETMVILLGVFFGVVIWLFFQRPRAE*
JGI20190J14840_10040273	3300001384	Arctic Peat Soil	VVVKHAVDSFIGPQVETLVILLGTFFAVVIWGFFQRHHPE*
JGI20189J14885_10073482	3300001401	Arctic Peat Soil	MPGVDSFIGPQVETMVILLGTLFAVAIWGFFQRHHSE*
JGI20206J14855_10498871	3300001408	Arctic Peat Soil	MHSLDIYIGPQIQTLVVPLGVLFGVVLWGFFQRQPSE*
JGI20184J14884_1027861	3300001415	Arctic Peat Soil	MMTGVDSFIGPQVETMVILLGTLFGVIIWGFFQRHRSE*
JGI12712J15308_100018472	3300001471	Forest Soil	VVVIPGVDNFIGPQVETLVILLGTLFGVLIWGFFQSHHSE*
Ga0070735_100462523	3300005534	Surface Soil	VLAGDIYIGPEVQTMVVLLGVFAAVCLWGFFQRRPSE*
Ga0070733_110028472	3300005541	Surface Soil	MTGVDSFIGPQVETLVILLGTLFAVIIWGFFQSHHSE*
Ga0066789_105052811	3300005994	Soil	MMQAVDIYIGPQVQTMVVLLGVFCAVLVWGFFQRHHSE*
Ga0075029_1000014863	3300006052	Watersheds	MQAVDNFIGPQVQTMVVLLGVLFAVLLWGFFQRHHSE*
Ga0075029_1007335632	3300006052	Watersheds	MMQAVDIYIGPQVQTMVVLLGVLFGVLIWGFFQRHPSE*
Ga0075017_1000025966	3300006059	Watersheds	MMQAVDNYIGPQVQTMVVLLAVLVGLLVWGFSQRHHSE*
Ga0075017_1000835463	3300006059	Watersheds	MQAVDIYIGPQVQTMVVLLGVFCAVCVWGFFQRHHSE*
Ga0075017_1002260373	3300006059	Watersheds	MQAVDSFIGPQVQTMVVLLGVLFGVLIWGFFQRHHSE*
Ga0075017_1002323412	3300006059	Watersheds	VNNSIGPQVQTMVVLLGVLFGVLIWGFFQRHPSE*
Ga0075019_107170012	3300006086	Watersheds	AGGSTRVEVFVIPGVDSYIGPQVETMVILLGTLFVVVIWGFFQHHSE*
Ga0075019_107429562	3300006086	Watersheds	VMMQAVDIYIGPQVQTMVVLLGVLFGVLIWGFFQRHPSE*
Ga0075015_1000239532	3300006102	Watersheds	MQAVDNYIGPQVQTMVVLLAVLVGLLVWGFSQRHHSE*
Ga0075522_1000246216	3300006638	Arctic Peat Soil	MLGVDSYIGPQVQTLVVLLGTFFGVIIWLFFQRKHSE*
Ga0075522_100051252	3300006638	Arctic Peat Soil	MPGVDSFIGPQVETMVILLGTLFVVIIWGFFQRHHSE*
Ga0075520_10121063	3300006795	Arctic Peat Soil	MPGVDSFIGPQVETMVILLGTLFVVIIWGFFQRHRSE*
Ga0075520_10234072	3300006795	Arctic Peat Soil	MMQAVDQFIGPQVQTMVVLLGVLCAVLIWGFFQRHPSE*
Ga0075528_102323612	3300006949	Arctic Peat Soil	MMQAVDIYIGPQVQTMVVLLGVLCGVLIWGFFQRHPSE*
Ga0116125_11128272	3300009628	Peatland	MHSVDSYIGPQIETMAILLGTLFVVLIWGFFQRHHSE*
Ga0116117_10519702	3300009635	Peatland	MVEGLVMMQAVDSYIGAQVQTLVVLLGVFIGIMVWGFFQRHHFK*
Ga0116215_10961992	3300009672	Peatlands Soil	VEVQAVDIYIGPQVQTLVVLLGVFFAVCLWGFFQRHPSE*
Ga0116217_102182803	3300009700	Peatlands Soil	MFGLDPYIGPEVETMVILLGVFFGVVIWLFFQRPRA
Ga0136449_1003973543	3300010379	Peatlands Soil	MFGVNPYIGSQVESMVILLGVFFAVTIWLYFQRHRAE*
Ga0136449_1011394832	3300010379	Peatlands Soil	VRRAEEGEEVEVQAVDMYIGPQVQTMVVLLGVFCAVVLWGFFQRHPSE*
Ga0136806_12696973	3300010386	Sediment	MLGADGYIGAQVQTMVVLLGVLFGVIIWGFFQRRPSK*
Ga0136821_12974721	3300010387	Sediment	VQGVDIYIGPQVQTMVVLLGVLFGVLIWGFFQRHPSE*
Ga0181528_101158051	3300014167	Bog	MQAVDTYFGAQAQTMVVLLGVFVAVILWGFFQRHSSE*
Ga0181528_101625132	3300014167	Bog	MMTGVDSFIGPQVETMVILLGTLFVVVIWGFFQRHRSE*
Ga0182018_100252923	3300014489	Palsa	MPGVDSYIGPQVETMVILLGTLFVVVIWGFFQRHHSE*
Ga0182013_1000023445	3300014492	Bog	MQGIDIYIGPQVQTMVVLLGVFIGVVLWGFFQRRPSE*
Ga0182013_102653792	3300014492	Bog	MVEGLVMMQAVDIYIGAQVQTMVVLLGVFIGIMVWGFFQRHHFK*
Ga0182016_100272645	3300014493	Bog	MFGVDSYIGPQVETILILLGTLFGVIIWGIFQRHGPE*
Ga0182016_100319967	3300014493	Bog	VDSYIGPQVETLVILLGTLFGVIIWGFFQRHGPE*
Ga0182016_105335532	3300014493	Bog	MQAVDTHFGAQAQTMVVLLGVFVAVILWGFFQRHSSE*
Ga0182012_1000017733	3300014499	Bog	MFGVDSYIGPQVETLVILLGTLFGVIIWGFFQRHGPE*
Ga0182024_1000027290	3300014501	Permafrost	MQGVDIYIGPQVQTLVVLLGVFIGVVLWGFFQHHHSE*
Ga0182024_1000842018	3300014501	Permafrost	MMQAVDSYIGPQVETLVVLLGVFIGVMVWGFFQRHHFK*
Ga0182024_1001071219	3300014501	Permafrost	MMQAVDIYIGAQVQTLVVLLGVFIGVCFWGFFQRHHFK*
Ga0182024_100118898	3300014501	Permafrost	MLGVDNFIGPQVQTLVVLLGTLFAVMIWGFFQRNHSE*
Ga0182024_102731894	3300014501	Permafrost	MVEGLVMMQAVDIYIGAQVQTLVVLLGVFIGVCFWGFFQRHHFK*
Ga0182024_109725612	3300014501	Permafrost	MMQGVDIFIGPQVQTLVVLLGVFIGVVLWGFFQHHHPE*
Ga0181525_100050226	3300014654	Bog	LRVEVVMMTGVDSFIGPQVETMVILLGTLFVVVIWGFFQRHRSE*
Ga0181522_100374733	3300014657	Bog	VIPGVDSYIGPQVETMVILLGTLFVVVIWGFFQHHSE*
Ga0181522_104581621	3300014657	Bog	GVVMHSVDSYIGPQIETMAILLGTLFVVLIWGFFQRHHSE*
Ga0182030_100013952	3300014838	Bog	MAGVDSFIGPQVETMVILLGTLFVVVIWGFFQRHHSE*
Ga0182030_100535366	3300014838	Bog	MVEGLVMMQAVDSYIGPQVETLVVLLGVFIGIMVWGFFQRHHFK*
Ga0182030_117321542	3300014838	Bog	MFGVDNYFGPQVETLVILLGTLFGVVIWGYFQRHGPE*
Ga0167666_10225363	3300015194	Glacier Forefield Soil	LVAVMHAVDSYIGPQVQTMVVLLGVLFGVIIWGFFQRHPSE*
Ga0187853_105504782	3300017940	Peatland	MHSVDSYIGPQIETMAILLGTLFVVLIWGFFQRHHSE
Ga0187879_105673332	3300017946	Peatland	MPGGDSFIGPQIETMVILLGTLFVVIIWGFFQRHRPE
Ga0187847_100208074	3300017948	Peatland	MVEGLVMMQAVDSYIGAQVQTLVVLLGVFIGIMVWGFFQRHHFK
Ga0187875_103102062	3300018035	Peatland	MVEGLVMMQAVDIYIGAQVQTMVVLLGVFIGIMVWGFFQRHHFK
Ga0187871_103204862	3300018042	Peatland	MPGVDSYIGPQVETMVILLGTLFVVLIWGFFQRHHSE
Ga0187887_100312483	3300018043	Peatland	MVEGLVMMQAVDSYIGPQVETLVVLLGVFIGIMVWGFFQRHHFK
Ga0187851_104307582	3300018046	Peatland	MMTGVDSFIGPQVETMVILLGTLFVVVIWGFFQRHRS
Ga0187771_110035822	3300018088	Tropical Peatland	MSATDTYLGAQVQTMVVLLGVLVGVLLWGFFQRHPTE
Ga0181502_13021791	3300019242	Peatland	MQAVDTYFGAQAQTMVVLLGVFVAVILWGFFQRHSSE
Ga0182025_13825312	3300019786	Permafrost	MMQAVDSYIGPQVETLVVLLGVFIGVMVWGFFQRHHFK
Ga0182031_10336252	3300019787	Bog	MPGVDSYIGPQVETMVILLGTLFVVVIWGFFQRHHSE
Ga0182031_10450231	3300019787	Bog	VMPVGVVVMPGVDSYIGPQVETMVILLGTLFVVVIWGFFQRHHSE
Ga0182031_10853513	3300019787	Bog	MAGVDSFIGPQVETMVILLGTLFVVVIWGFFQRHHSE
Ga0182031_14979133	3300019787	Bog	MFGIDNYIGPQVETLVILLGTLFGVLIWGYFQSHHPK
Ga0210400_105021472	3300021170	Soil	VVVIPGVDNFIGPQVETLVILLGTLFGVLIWGFFQSHHSE
Ga0210383_106667681	3300021407	Soil	MPGVDSYIGPQVETLVILLGTLFAVVIWGFFQRHHSE
Ga0213850_12118303	3300021856	Watersheds	MMQAVDIYIGPQVQTMVVLLGVLFGVLIWGFFQRHPSE
Ga0224548_10126532	3300022518	Soil	MTGVDSYIGPQVETLVILLGTLFAVMIWGFFQRHHSE
Ga0224534_100002650	3300022524	Soil	MQGIDIYIGPQVQTMVVLLGVFIGVVLWGFFQRRPSE
Ga0224551_10113323	3300023259	Soil	MTGVDSFIGPQVETLVILLGTLFAVLIWGLFQRHHSE
Ga0224551_10144341	3300023259	Soil	FCGSTVEGLVMMQAVDIYIGAQVQTLVVLLGVFIGVCFWGFFQRHHFK
Ga0224556_10071113	3300024295	Soil	MTGVDSFIGPQVETMVILLGTLFVVVIWGFFQRHHSE
Ga0208585_10188942	3300025386	Arctic Peat Soil	MMTGVDSFIGPQVETMVILLGTLFGVIIWGFFQRHRSE
Ga0208077_10522062	3300025427	Arctic Peat Soil	VVVIPGVDSYIGPQVETMVILLGTLFVVVIWGFFQHHSE
Ga0208850_10000042	3300025457	Arctic Peat Soil	MLGVDPFIGPQVQTMVVLLGVFFAVVIWGFFQRNHSE
Ga0207932_10440692	3300025495	Arctic Peat Soil	MMQAVDQFIGPQVQTMVVLLGVLCAVLIWGFFQRHPSE
Ga0208356_10257992	3300025504	Arctic Peat Soil	MMSGVDNFIGPQVETMVILLGTLFVVIIWGFFQRHSSE
Ga0208356_10902592	3300025504	Arctic Peat Soil	MPGVDSFIGPQVETMVILLGTLFVVIIWGFFQRHHSE
Ga0208717_10042426	3300025574	Arctic Peat Soil	MSGVDNFIGPQVETMVILLGTLFVVIIWGFFQRHSSE
Ga0207927_10004637	3300025579	Arctic Peat Soil	MMQAVDIYIGPQVQTMVVLLGVLCGLMVWGFFQRHPSE
Ga0208586_1000001127	3300025588	Arctic Peat Soil	VVVKHAVDSFIGPQVETLVILLGTFFAVVIWGFFQRHHPE
Ga0208586_10009416	3300025588	Arctic Peat Soil	MPGVDSFIGPQVETMVILLGTLFVVVIWGFFQRHRSE
Ga0207930_10539372	3300025604	Arctic Peat Soil	MMQAVDIYIGPQVQTMVVLLGVFCAVLVWGFFQRHHSE
Ga0208480_10019818	3300025633	Arctic Peat Soil	MHSVDSYIGPQVETMVILLGTLFVVVIWGFFQRHHSE
Ga0209385_10114575	3300025650	Arctic Peat Soil	MPGVDSFIGPQVETMVILLGTLTVVIIWGFFQRHRSE
Ga0208849_10153212	3300025664	Arctic Peat Soil	MQAVDIYIGPQVQSMVVLLGVLFGVVLWGFFQRQPSE
Ga0207933_10607092	3300025679	Arctic Peat Soil	MHSVDIYIGPQIQSLVVPLGVLFGVILWGFFQRQPSE
Ga0207933_10854772	3300025679	Arctic Peat Soil	MPGVDSFIGPQVETMVILLGTLFAVAIWGFFQRHHSE
Ga0208357_100089019	3300025703	Arctic Peat Soil	MHSLDIYIGPQIQTLVVPLGVLFGVVLWGFFQRQPSE
Ga0208357_11937581	3300025703	Arctic Peat Soil	TMLSVDNFIGPQVETLVVLLGTFILVVLWGFFQRHHSE
Ga0209483_10292233	3300025862	Arctic Peat Soil	MLGVDSYIGPQVQTLVVLLGTFFGVIIWLFFQRKHSE
Ga0209540_106099552	3300025888	Arctic Peat Soil	MMQAVDIYIGPQVQTMVVLLGVLCAVLIWGFFQRHPSE
Ga0208565_10861672	3300027662	Peatlands Soil	VEVQAVDIYIGPQVQTLVVLLGVFFAVCLWGFFQRHPSE
Ga0209448_102271292	3300027783	Bog Forest Soil	LVGEEVEMQAVDPYIGPQVQTLVVLLGVFFAVCLWGFFQRHPSE
Ga0209415_1000025325	3300027905	Peatlands Soil	VQAVDIYIGPQVQTLVVLLGVFFAVCLWGFFQRHPSE
Ga0209415_100191153	3300027905	Peatlands Soil	MFGVNPYIGSQVESMVILLGVFFAVTIWLYFQRHRAE
Ga0209168_101684072	3300027986	Surface Soil	VLAGDIYIGPEVQTMVVLLGVFAAVCLWGFFQRRPSE
Ga0302149_10088042	3300028552	Bog	MFGVDSYIGPQVETILILLGTLFGVIIWGIFQRHGPE
Ga0302151_102264932	3300028562	Bog	MFGVDSYIGPQVETLVILLGTLFGVIIWGFFQRHGPE
Ga0302265_11575451	3300028859	Bog	GVVMHSVDSYIGPQIETMAILLGTLFVVLIWGFFQRHHSE
Ga0311363_106279992	3300029922	Fen	MQAVDPFIGSQVLTMVLLLGVLVGVIVWGFFQRHPSE
Ga0302270_100202754	3300030011	Bog	MQAVDTYFGAQAQTMVVLLGVFVPVILWGFFQRHSSE
Ga0311344_100632884	3300030020	Bog	MMTGVDSFIGPQVETMVILLGTLFVVVIWGFFQRHRSE
Ga0302275_100327841	3300030518	Bog	QAVDTYFGAQAQTMVVLLGVFVAVILWGFFQRHSSE
Ga0307919_10004642	3300030718	Soil	MMLGVDNFIGPQIQTLVVLLGVFFGVCIWGFFQRHHSE
Ga0307919_10168552	3300030718	Soil	MMQGIDNFIGPEVQTMVVLLGVLFGVVIWGFFQRHHSE
Ga0307919_10605012	3300030718	Soil	VVMLGVDSFIGPQVLTLVVLLGTLFGVGVWLFFQRRPSE
Ga0302140_1000164230	3300031261	Bog	MQAVDTYFCAQAQTMVVLLGVFVAVILWGFFQRHSSE
Ga0307376_103161192	3300031578	Soil	VVVMMQGVDNFIGPQVQTMVVLLGVLFGVLIWGFFQRRPSK
Ga0307375_10000071104	3300031669	Soil	MMQGVDNFIGPQVQTMVVLLGVLFGVLIWGFFQRRPSK
Ga0307375_1000065925	3300031669	Soil	MMQAVDNYIGAQVQTMVVLLGVLVAVVLWGFFQRHPSE
Ga0307375_100831151	3300031669	Soil	MQAVDNYIGAQVQTMVVLLGVLVAVVLWGFFQRHPSE
Ga0307375_101700672	3300031669	Soil	VVTNVQGVDIYIGPQVQTMVVLLGVLFGVIIWGFFQRHPSE
Ga0307375_102617071	3300031669	Soil	AVDIYIGSQVLTMVLLLGVLFGVLLWGFFQRHPSE
Ga0307374_1000443615	3300031670	Soil	MMQGIDNFIGPEVQTMVVLLGVFFGVVIWGFFQRHHSE
Ga0307374_100212074	3300031670	Soil	MMQGIDNFIGPEVQTMVVLLGVLFGVIIWGFFQRHHSE
Ga0307374_100891222	3300031670	Soil	MPGVDSYIGPQIETLVILLGTLFVVLIWGFFQRHPSE
Ga0307374_103389882	3300031670	Soil	MPGVDSFIGPQVETMVILLGTLFVVVIWGFFQRHHSE
Ga0307374_105166022	3300031670	Soil	MLGADGYIGAQVQTMVVLLGVLFGVLIWGFFQRRPSK
Ga0311301_100528872	3300032160	Peatlands Soil	MFGLDPYIGPEVETMVILLGVFFGVVIWLFFQRPRAE
Ga0334828_001596_260_382	3300033822	Soil	VVVMQGIDIYIGPQVQTMVVLLGVFIGVVLWGFFQRRPSE
Ga0334790_001533_822_935	3300033887	Soil	MPGVDSFIGPQVETMVILLGTLFVVIIWGFFQRHRSE
Ga0370483_0064761_632_745	3300034124	Untreated Peat Soil	MTGVDSFIGPQVETMVILLGTLFVVVIWGFFQRHRSE
Ga0370492_0003502_4554_4670	3300034282	Untreated Peat Soil	MMPGVDSFIGPQVETMVILLGTLFVVVIWGFFQRHRSE

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F065249

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences