3300001411: Arctic peat soil from Barrow, Alaska - NGEE Surface sample 415-2 shallow-072012

Overview

Basic Information

• IMG/M Taxon OID: 3300001411
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0084162 | Gp0056290 | Ga0003468
• Sample Name: Arctic peat soil from Barrow, Alaska - NGEE Surface sample 415-2 shallow-072012
• Sequencing Status: Permanent Draft
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 14067771
• Sequencing Scaffolds: 10
• Novel Protein Genes: 11
• Associated Families: 11

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
Not Available	2
All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	2
All Organisms → cellular organisms → Bacteria	4
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → unclassified Solirubrobacterales → Solirubrobacterales bacterium	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Arctic Peat Soil Microbial Communities From The Barrow Environmental Observatory Site, Barrow, Alaska, Usa
• Type: Environmental
• Taxonomy: Environmental → Terrestrial → Soil → Unclassified → Permafrost → Arctic Peat Soil → Arctic Peat Soil Microbial Communities From The Barrow Environmental Observatory Site, Barrow, Alaska, Usa

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): polar biome → polar → peat soil
• Earth Microbiome Project Ontology (EMPO): Free-living → Non-saline → Soil (non-saline)

Location Information

• Location: Barrow Environmental Observatory site, Barrow, Alaska
• Coordinates
  • Lat. (^o): 71.2999
  • Long. (^o): -156.61
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003555	Metagenome / Metatranscriptome	480	Y
F023165	Metagenome / Metatranscriptome	211	Y
F035555	Metagenome / Metatranscriptome	172	Y
F036361	Metagenome / Metatranscriptome	170	Y
F039794	Metagenome / Metatranscriptome	163	Y
F046087	Metagenome / Metatranscriptome	152	Y
F048479	Metagenome / Metatranscriptome	148	Y
F057590	Metagenome / Metatranscriptome	136	Y
F059473	Metagenome	134	Y
F075457	Metagenome / Metatranscriptome	119	N
F080394	Metagenome / Metatranscriptome	115	Y

Associated Scaffolds

Scaffold	Taxonomy	Length
JGI20182J14882_100044	Not Available	2522
JGI20182J14882_100301	Not Available	1496
JGI20182J14882_100694	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1068
JGI20182J14882_100718	All Organisms → cellular organisms → Bacteria	1050
JGI20182J14882_101408	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	773
JGI20182J14882_101821	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	693
JGI20182J14882_102501	All Organisms → cellular organisms → Bacteria	617
JGI20182J14882_102738	All Organisms → cellular organisms → Bacteria	596
JGI20182J14882_103650	All Organisms → cellular organisms → Bacteria	533
JGI20182J14882_104317	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → unclassified Solirubrobacterales → Solirubrobacterales bacterium	503

Sequences

Scaffold ID	Protein ID	Family	Sequence
JGI20182J14882_100044	JGI20182J14882_1000442	F035555	VHPISQLAFDLDVASSAPPMVMGPPPDELPEQDRAAAVSKLASLIARHHAAAGSADDDE*
JGI20182J14882_100301	JGI20182J14882_1003012	F075457	MNHAIKAMAHENKIRRVDYFYSAAERRSRGALWPSFAPALILV
JGI20182J14882_100694	JGI20182J14882_1006941	F039794	MLPSASPYSVGVPEGISFAAEYPARTFPYQRFDAALASGSA*
JGI20182J14882_100718	JGI20182J14882_1007182	F023165	YTRGAVKIVNRKKLEDSACECYAVIRQYDGELGLK*
JGI20182J14882_101408	JGI20182J14882_1014082	F003555	MYVRVVRFSDVNAERFEATLARIKEADGPPPDVRSTGLTVLFDEAQGTAVVLQYFATAQDMEAGAKVMAAMDASETPGTRISVDTCEQKLELKV*
JGI20182J14882_101821	JGI20182J14882_1018211	F057590	TAPVGSESDHRAENGTTKCPESLCRMSVLPPSGRRGSSPARTLLPGRRSYRLIRRSRSALLSFGLSLVRGVSAGCYQPLLPAGPSRRYLCESFPGCLGPCHGGFVECTCLFLPPRQRPSPVHYRGRLPAFPRPNDFTTDLFFETAAIPLCSGPQVCSPPRSFPPLRLNRRRAAEAFTSEQNMLRCLRMHRTC*
JGI20182J14882_102501	JGI20182J14882_1025011	F059473	RGALLIAACLIAAIRLRGEPIQPSPKLKATIYDSVQLAVLVWREIQARGAKPVN*
JGI20182J14882_102738	JGI20182J14882_1027381	F036361	MREMIISELSQALYELARGFAHFLPRLIVMLILTFVGWVIAYVLRV
JGI20182J14882_103274	JGI20182J14882_1032741	F046087	MYIRLNRAHRTLPVILGVVTLASVGVLFAWDAFPRLFPAKAHDFLAAFPLAMIAFASLVYQTAHRPARVEVVKAIMLAAAFLF
JGI20182J14882_103650	JGI20182J14882_1036501	F048479	KVKNYALVFCLFVFLFVTIGGGLHMSPGGAFLAAATGTPLVIYAFHRGFNGASGPEVRADSTRNEVAYVSSKTDKSD*
JGI20182J14882_104317	JGI20182J14882_1043172	F080394	MSPLTVRRFRAERLLRGEFEALRGRVLAAVRARLRGSGVTLDQSDLEACYASAWQGLYAAVLD