3300001326: Permafrost active layer microbial communities from McGill Arctic Research Station, Canada - (A28-35cm)- 6 month illumina

Overview

Basic Information

• IMG/M Taxon OID: 3300001326
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0083722 | Gp0055458 | Ga0010821
• Sample Name: Permafrost active layer microbial communities from McGill Arctic Research Station, Canada - (A28-35cm)- 6 month illumina
• Sequencing Status: Permanent Draft
• Sequencing Center: University of Tennessee
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 26207347
• Sequencing Scaffolds: 20
• Novel Protein Genes: 22
• Associated Families: 22

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria	6
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	4
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Chloroflexia → Chloroflexales → Roseiflexineae → Roseiflexaceae → Roseiflexus → Roseiflexus castenholzii	1
All Organisms → cellular organisms → Bacteria → Aquificae → Aquificae → Aquificales → Aquificaceae → Hydrogenobaculum → unclassified Hydrogenobaculum → Hydrogenobaculum sp. Y04AAS1	1
Not Available	1
All Organisms → cellular organisms → Bacteria → Acidobacteria	4
All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia → unclassified Blastocatellia → Blastocatellia bacterium	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	1
All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Permafrost And Active Layer Microbial Communities From Mcgill Arctic Research Station (Mars)
• Type: Environmental
• Taxonomy: Environmental → Terrestrial → Soil → Unclassified → Permafrost → Permafrost → Permafrost And Active Layer Microbial Communities From Mcgill Arctic Research Station (Mars)

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): terrestrial biome → active permafrost layer → permafrost
• Earth Microbiome Project Ontology (EMPO): Free-living → Non-saline → Soil (non-saline)

Location Information

• Location: Axel Heiberg Island, Nunavut, Canada
• Coordinates
  • Lat. (^o): 79.26
  • Long. (^o): -90.46
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002096	Metagenome / Metatranscriptome	594	Y
F002431	Metagenome / Metatranscriptome	560	Y
F008326	Metagenome / Metatranscriptome	335	Y
F009656	Metagenome	315	Y
F014483	Metagenome	262	Y
F015343	Metagenome / Metatranscriptome	255	Y
F026727	Metagenome / Metatranscriptome	197	Y
F027364	Metagenome	195	Y
F028299	Metagenome / Metatranscriptome	192	Y
F029941	Metagenome / Metatranscriptome	187	Y
F036646	Metagenome	169	Y
F036978	Metagenome	169	Y
F041395	Metagenome	160	Y
F051574	Metagenome / Metatranscriptome	144	Y
F068534	Metagenome	124	Y
F069928	Metagenome / Metatranscriptome	123	Y
F080300	Metagenome	115	Y
F080821	Metagenome	114	Y
F087570	Metagenome / Metatranscriptome	110	Y
F087911	Metagenome	110	Y
F098126	Metagenome / Metatranscriptome	104	Y
F104112	Metagenome / Metatranscriptome	101	N

Associated Scaffolds

Scaffold	Taxonomy	Length
A2835W6_1002460	All Organisms → cellular organisms → Bacteria	1643
A2835W6_1003000	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	505
A2835W6_1006081	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Chloroflexia → Chloroflexales → Roseiflexineae → Roseiflexaceae → Roseiflexus → Roseiflexus castenholzii	505
A2835W6_1006258	All Organisms → cellular organisms → Bacteria	1308
A2835W6_1006593	All Organisms → cellular organisms → Bacteria → Aquificae → Aquificae → Aquificales → Aquificaceae → Hydrogenobaculum → unclassified Hydrogenobaculum → Hydrogenobaculum sp. Y04AAS1	676
A2835W6_1008639	Not Available	533
A2835W6_1015144	All Organisms → cellular organisms → Bacteria	642
A2835W6_1017286	All Organisms → cellular organisms → Bacteria	500
A2835W6_1017776	All Organisms → cellular organisms → Bacteria → Acidobacteria	668
A2835W6_1018870	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	800
A2835W6_1028246	All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia → unclassified Blastocatellia → Blastocatellia bacterium	1896
A2835W6_1028973	All Organisms → cellular organisms → Bacteria	693
A2835W6_1029706	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	663
A2835W6_1029820	All Organisms → cellular organisms → Bacteria → Acidobacteria	571
A2835W6_1032445	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	739
A2835W6_1040653	All Organisms → cellular organisms → Bacteria → Acidobacteria	708
A2835W6_1044976	All Organisms → cellular organisms → Bacteria → Acidobacteria	626
A2835W6_1045877	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	827
A2835W6_1053756	All Organisms → cellular organisms → Bacteria	651
A2835W6_1061319	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	1058

Sequences

Scaffold ID	Protein ID	Family	Sequence
A2835W6_1002460	A2835W6_10024602	F014483	MKASTAKSFNKKLACPSSNLLLSFQRRALAPEINLLVKHHLAGCDFCYCEVPLLAFYALPLRGECRTPDLPINLRVLAESILGKDNSEEVPEPHFQR*
A2835W6_1003000	A2835W6_10030001	F087570	VNRWLRLVLQTALGLVLLWLWLRTVSLTEVMSHARVHSWAPVLLMIALFLL
A2835W6_1006081	A2835W6_10060811	F068534	MSQLITLIWLKWTLFRNSLRSSKVVVNRLASLLGMLAALALGLLIALGLGIAAYALTSPRLGFQTFRAARENRSAGIPTAEFIFFSIFAMCYLFWSILPLSIGSNRQFDPGNLLLYPISLRKLFAVDFVSEVASLQSVFAIPAIMAIGFGAGLA
A2835W6_1006258	A2835W6_10062582	F051574	MERTWKSKKDRRDAAVAFLQKTITDPDVRSAVLKDRKAAHKQFEKAGDINIPDDIEVICVGPSTQERDRLVVFLLPPEGTSPEHLDAFKYWIGTWVPYQLDPVTSSLSHGQTQPEMAESRA*
A2835W6_1006593	A2835W6_10065931	F028299	MNSRSVTISMALIALICFFLPWVQLSCGTSENRLSGVDLARDGHTGLWLIPLLMLAVLLLGTARAWKDRRELSALVCLVAGLVSAYLMNRERMRAEDTSGLIAVRLTGWFWLGLGSTIGLVVVSAFRFLKRTRTS*
A2835W6_1008639	A2835W6_10086391	F104112	SAASDVYKRQILEACGQPNMKMARHFLEWQRPEKWGKRRKRHVPHNAGVLVIGGDVTKKPEYDTTASVKARKWKSFSRKFREAKT*
A2835W6_1015144	A2835W6_10151442	F027364	MSTDNEHGSATRGSLRLAPNSVELEEQKAKLPRQFVNFTFYRATPEWRMLAEDEKRRCK
A2835W6_1017286	A2835W6_10172861	F002096	MSYIVCWFLHRREREVLLQGVLPWGIDAVVFCWRCDRMRGRAVRVLQL
A2835W6_1017776	A2835W6_10177762	F026727	EWMSATQLADYWQLYNDKNEPTTAGILKWSKRPLDQFPLPHAYMGXXXXLLRFNREEADGWARQEAERRRIQNEKRRLKIA*
A2835W6_1018870	A2835W6_10188702	F069928	MSSLPRRDAEVISLFGTQAMTLQYRCRKCGTLFEAIKYE*
A2835W6_1028246	A2835W6_10282463	F009656	EAADAGRFTSKLWHDKDYPRIQILTVEGLLNGTERVDAPPQLNPFAMAARESIREKQAEML*
A2835W6_1028973	A2835W6_10289731	F098126	GATCDERRRDRLKFLKMIMIMAVLVTALELGACAQHKEVVAPAPAPTGK*
A2835W6_1029706	A2835W6_10297062	F015343	MSKQISEASEQTPSSRIGRAAAYSARIQELMRYDKLSSAEYPLVMTILRAVREGHTEETWQEEQKRPLKALADKLPDKGIAHADAANRFEQAVCC
A2835W6_1029820	A2835W6_10298201	F041395	ANQSPNAYCKRCGEWLADKKSFGGRGASKPEERITAMIVFNGVSALLALFSAIALYATYLNTPEAKWSVYVAGACCFVIAIHQMLSFAFALELKLRLKRGHTNTRQAIGSEAGGSVAALGSGETTQFVDARSVTENTTELLEAVPRVKEPGNSQRR*
A2835W6_1030579	A2835W6_10305791	F036978	QSTFTSPADGRLFLLVNDDNYSDNTGSFSARIVYPDYR*
A2835W6_1032445	A2835W6_10324451	F002431	MIKNTKNGQIARSVRFDIATNKNEEFQTLFRNEILPTLKKQDGFKDELLLVKDQHVLAISVWNDMDSARKYETATYPQLDKKLRPVMSGNATVETFKY
A2835W6_1040653	A2835W6_10406531	F008326	HQERVFPAPRDLVFEAARTFMAESLGWQVTNTPDGFTAQGYSFSHRAIANLQIQSAAGGASSESGTRVAIELLVERAGWRGFMLFDVGGYYNIQIRKWLDGVQWSLHQKLTGSHDEFTNPLVLADNKAAACIFNGCLVFIVSMFALYFLITFICAVVGLITGNLYLWGRGGTLAIHGIWARILSALILMFGAFLGWRIKRKS*
A2835W6_1044976	A2835W6_10449762	F087911	VVSGQLEDSLRHDIESYIEGRLGGIKQEIAALQSQLNESLSRLLDRQTEVQLDGGVAASIMEHL
A2835W6_1045877	A2835W6_10458771	F029941	MTTXXXCISSAASDVYKRQVLLIPVLLLLVFSLMRLRGTTRELQAALDDESGARDRAALLLAIASAVNSSLALEEVLNVALTHAGRIMGAVAGAMYLVQPTKAQLHREAEYNLSLIHI*
A2835W6_1053756	A2835W6_10537561	F080821	MVAAAVVAVLNLKRVANLGMLWLSPPLLIVGMVFV
A2835W6_1061319	A2835W6_10613193	F036646	MTRGDRPLPFEQLEPYMRGAKFAALALSRRHQDHDPDIAADAARYFEXXXXERYRQAAIATFRAHRDRGGIA*
A2835W6_1082095	A2835W6_10820951	F080300	TITRREVYKNDHKHYAFFVPLGMKTDRVLQSAWIDLDVATTEPQALQGFMAHELGHGMGLWDCPKCKKKQTIMRSFPGVNKDNGLIEPSACDLEVMRQVFERQKRLASIGNEAAAIGVSGTP*