Metagenome Family F080821

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F080821
Family Type	Metagenome
Number of Sequences	114
Average Sequence Length	52 residues
Representative Sequence	VIGILFLVAAAVVAVLNLKRVANLGMLWLSPPLLIVGIAFVTLAARRK
Number of Associated Samples	100
Number of Associated Scaffolds	114

Quality Assessment
Transcriptomic Evidence	No
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	56.14 %
% of genes near scaffold ends (potentially truncated)	22.81 %
% of genes from short scaffolds (< 2000 bps)	69.30 %
Associated GOLD sequencing projects	87
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.46

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (99.123 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil (15.790 % of family members)
Environment Ontology (ENVO)	Unclassified (54.386 % of family members)
Earth Microbiome Project Ontology (EMPO)	Host-associated → Plant → Plant rhizosphere (58.772 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Transmembrane (alpha-helical)	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 59.21% β-sheet: 0.00% Coil/Unstructured: 40.79%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.46
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.46
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 114 Family Scaffolds
PF01916	DS	31.58
PF08241	Methyltransf_11	19.30
PF00005	ABC_tran	7.89
PF02784	Orn_Arg_deC_N	4.39
PF00278	Orn_DAP_Arg_deC	3.51
PF15919	HicB_lk_antitox	3.51
PF03681	Obsolete Pfam Family	2.63
PF04138	GtrA	1.75
PF00160	Pro_isomerase	0.88
PF00571	CBS	0.88
PF01066	CDP-OH_P_transf	0.88
PF12802	MarR_2	0.88
PF13174	TPR_6	0.88
PF07927	HicA_toxin	0.88
PF06831	H2TH	0.88
PF00291	PALP	0.88
PF13579	Glyco_trans_4_4	0.88

COG ID	Name	Functional Category	% Frequency in 114 Family Scaffolds
COG1899	Deoxyhypusine synthase	Translation, ribosomal structure and biogenesis [J]	31.58
COG0019	Diaminopimelate decarboxylase	Amino acid transport and metabolism [E]	7.89
COG1166	Arginine decarboxylase (spermidine biosynthesis)	Amino acid transport and metabolism [E]	7.89
COG0266	Formamidopyrimidine-DNA glycosylase	Replication, recombination and repair [L]	0.88
COG0558	Phosphatidylglycerophosphate synthase	Lipid transport and metabolism [I]	0.88
COG0652	Peptidyl-prolyl cis-trans isomerase (rotamase) - cyclophilin family	Posttranslational modification, protein turnover, chaperones [O]	0.88
COG1183	Phosphatidylserine synthase	Lipid transport and metabolism [I]	0.88
COG1724	Predicted RNA binding protein YcfA, dsRBD-like fold, HicA-like mRNA interferase family	General function prediction only [R]	0.88
COG5050	sn-1,2-diacylglycerol ethanolamine- and cholinephosphotranferases	Lipid transport and metabolism [I]	0.88

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	99.12 %
Unclassified	root	N/A	0.88 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	99.12 %
Unclassified	root	N/A	0.88 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	99.12 %
Unclassified	root	N/A	0.88 %

Name	Rank	Taxonomy	Distribution
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	57.02 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	0.88 %
Unclassified	root	N/A	0.88 %

Name	Rank	Taxonomy	Distribution
unclassified Acidobacteria	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria	16.67 %
Blastocatellia	class	All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia	10.53 %
Acidobacteriia	class	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia	0.88 %
Gammaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	0.88 %
Unclassified	root	N/A	0.88 %

Name	Rank	Taxonomy	Distribution
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	16.67 %
unclassified Blastocatellia	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia → unclassified Blastocatellia	5.26 %
Blastocatellales	order	All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia → Blastocatellales	4.39 %
Chloracidobacterium	genus	All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia → Chloracidobacterium	0.88 %
Acidobacteriia	class	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia	0.88 %
Gammaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	0.88 %
Unclassified	root	N/A	0.88 %

Name	Rank	Taxonomy	Distribution
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	16.67 %
Blastocatellia bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia → unclassified Blastocatellia → Blastocatellia bacterium	5.26 %
Pyrinomonadaceae	family	All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia → Blastocatellales → Pyrinomonadaceae	4.39 %
Chloracidobacterium thermophilum	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia → Chloracidobacterium → Chloracidobacterium thermophilum	0.88 %
Acidobacteriia	class	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia	0.88 %
Gammaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	0.88 %
Unclassified	root	N/A	0.88 %

Name	Rank	Taxonomy	Distribution
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	16.67 %
Blastocatellia bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia → unclassified Blastocatellia → Blastocatellia bacterium	5.26 %
Pyrinomonas	genus	All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia → Blastocatellales → Pyrinomonadaceae → Pyrinomonas	4.39 %
Chloracidobacterium thermophilum	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia → Chloracidobacterium → Chloracidobacterium thermophilum	0.88 %
Acidobacteriia	class	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia	0.88 %
Gammaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	0.88 %
Unclassified	root	N/A	0.88 %

Name	Rank	Taxonomy	Distribution
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	16.67 %
Blastocatellia bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia → unclassified Blastocatellia → Blastocatellia bacterium	5.26 %
Pyrinomonas methylaliphatogenes	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia → Blastocatellales → Pyrinomonadaceae → Pyrinomonas → Pyrinomonas methylaliphatogenes	4.39 %
Chloracidobacterium thermophilum	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia → Chloracidobacterium → Chloracidobacterium thermophilum	0.88 %
Acidobacteriia	class	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia	0.88 %
Gammaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	0.88 %
Unclassified	root	N/A	0.88 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
2124908006\|FWIROz_GJ87FRN02GAJQD	All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia → unclassified Blastocatellia → Blastocatellia bacterium	507	Open in IMG/M
3300000887\|AL16A1W_10095540	All Organisms → cellular organisms → Bacteria → Acidobacteria	3213	Open in IMG/M
3300001326\|A2835W6_1053756	All Organisms → cellular organisms → Bacteria	651	Open in IMG/M
3300002886\|JGI25612J43240_1038999	All Organisms → cellular organisms → Bacteria → Acidobacteria	683	Open in IMG/M
3300002897\|JGI24804J43974_1008443	All Organisms → cellular organisms → Bacteria	805	Open in IMG/M
3300002907\|JGI25613J43889_10000796	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia	7646	Open in IMG/M
3300004156\|Ga0062589_100067808	All Organisms → cellular organisms → Bacteria → Acidobacteria	2103	Open in IMG/M
3300004156\|Ga0062589_101094489	All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia → unclassified Blastocatellia → Blastocatellia bacterium	753	Open in IMG/M
3300004479\|Ga0062595_101204406	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	672	Open in IMG/M
3300004778\|Ga0062383_10180518	All Organisms → cellular organisms → Bacteria	964	Open in IMG/M
3300005293\|Ga0065715_10822355	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	602	Open in IMG/M
3300005330\|Ga0070690_100601791	All Organisms → cellular organisms → Bacteria	834	Open in IMG/M
3300005331\|Ga0070670_100003858	All Organisms → cellular organisms → Bacteria	12500	Open in IMG/M
3300005334\|Ga0068869_100003799	All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia → Chloracidobacterium → Chloracidobacterium thermophilum	9306	Open in IMG/M
3300005334\|Ga0068869_100009108	All Organisms → cellular organisms → Bacteria → Acidobacteria	6431	Open in IMG/M
3300005345\|Ga0070692_10528040	All Organisms → cellular organisms → Bacteria → Acidobacteria	769	Open in IMG/M
3300005353\|Ga0070669_100959095	All Organisms → cellular organisms → Bacteria	732	Open in IMG/M
3300005354\|Ga0070675_100464208	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1137	Open in IMG/M
3300005355\|Ga0070671_100452038	All Organisms → cellular organisms → Bacteria	1102	Open in IMG/M
3300005364\|Ga0070673_100332231	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1345	Open in IMG/M
3300005440\|Ga0070705_100848791	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	730	Open in IMG/M
3300005441\|Ga0070700_100092927	All Organisms → cellular organisms → Bacteria	1972	Open in IMG/M
3300005444\|Ga0070694_100306788	All Organisms → cellular organisms → Bacteria	1218	Open in IMG/M
3300005444\|Ga0070694_100609754	All Organisms → cellular organisms → Bacteria	880	Open in IMG/M
3300005456\|Ga0070678_101629066	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	606	Open in IMG/M
3300005467\|Ga0070706_100042282	All Organisms → cellular organisms → Bacteria	4209	Open in IMG/M
3300005471\|Ga0070698_100024457	All Organisms → cellular organisms → Bacteria → Acidobacteria	6302	Open in IMG/M
3300005518\|Ga0070699_100057985	All Organisms → cellular organisms → Bacteria	3353	Open in IMG/M
3300005518\|Ga0070699_100896258	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	812	Open in IMG/M
3300005546\|Ga0070696_100079149	All Organisms → cellular organisms → Bacteria → Acidobacteria	2325	Open in IMG/M
3300005546\|Ga0070696_100346299	All Organisms → cellular organisms → Bacteria → Acidobacteria	1150	Open in IMG/M
3300005548\|Ga0070665_100666852	All Organisms → cellular organisms → Bacteria	1053	Open in IMG/M
3300005549\|Ga0070704_101358514	All Organisms → cellular organisms → Bacteria	651	Open in IMG/M
3300005564\|Ga0070664_100153337	All Organisms → cellular organisms → Bacteria	2035	Open in IMG/M
3300005577\|Ga0068857_101103618	All Organisms → cellular organisms → Bacteria	766	Open in IMG/M
3300005616\|Ga0068852_101896356	All Organisms → cellular organisms → Bacteria → Acidobacteria	618	Open in IMG/M
3300005617\|Ga0068859_101473052	All Organisms → cellular organisms → Bacteria → Acidobacteria	751	Open in IMG/M
3300005618\|Ga0068864_101885726	All Organisms → cellular organisms → Bacteria → Acidobacteria	603	Open in IMG/M
3300005719\|Ga0068861_100800621	All Organisms → cellular organisms → Bacteria	884	Open in IMG/M
3300005719\|Ga0068861_101224774	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	727	Open in IMG/M
3300009036\|Ga0105244_10372742	All Organisms → cellular organisms → Bacteria	657	Open in IMG/M
3300009137\|Ga0066709_101682530	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	901	Open in IMG/M
3300009148\|Ga0105243_11113479	All Organisms → cellular organisms → Bacteria → Acidobacteria	798	Open in IMG/M
3300009176\|Ga0105242_12750060	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	542	Open in IMG/M
3300010045\|Ga0126311_11635389	All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia → unclassified Blastocatellia → Blastocatellia bacterium	543	Open in IMG/M
3300010373\|Ga0134128_11952782	All Organisms → cellular organisms → Bacteria → Acidobacteria	646	Open in IMG/M
3300010396\|Ga0134126_10100197	All Organisms → cellular organisms → Bacteria → Acidobacteria	3561	Open in IMG/M
3300010399\|Ga0134127_10188085	All Organisms → cellular organisms → Bacteria	1910	Open in IMG/M
3300010400\|Ga0134122_10847871	All Organisms → cellular organisms → Bacteria	878	Open in IMG/M
3300010400\|Ga0134122_11678431	All Organisms → cellular organisms → Bacteria	662	Open in IMG/M
3300010403\|Ga0134123_13528078	Not Available	507	Open in IMG/M
3300011119\|Ga0105246_11021679	All Organisms → cellular organisms → Bacteria → Acidobacteria	750	Open in IMG/M
3300011438\|Ga0137451_1157952	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	711	Open in IMG/M
3300011444\|Ga0137463_1009392	All Organisms → cellular organisms → Bacteria	3328	Open in IMG/M
3300011444\|Ga0137463_1061268	All Organisms → cellular organisms → Bacteria	1406	Open in IMG/M
3300012198\|Ga0137364_10155725	All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia → unclassified Blastocatellia → Blastocatellia bacterium	1655	Open in IMG/M
3300012199\|Ga0137383_10307670	All Organisms → cellular organisms → Bacteria	1160	Open in IMG/M
3300012353\|Ga0137367_10084430	All Organisms → cellular organisms → Bacteria	2346	Open in IMG/M
3300012354\|Ga0137366_10684433	All Organisms → cellular organisms → Bacteria → Acidobacteria	732	Open in IMG/M
3300012355\|Ga0137369_10080619	All Organisms → cellular organisms → Bacteria	2730	Open in IMG/M
3300012360\|Ga0137375_10488176	All Organisms → cellular organisms → Bacteria	1051	Open in IMG/M
3300012362\|Ga0137361_10214337	All Organisms → cellular organisms → Bacteria	1745	Open in IMG/M
3300012532\|Ga0137373_10136701	All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia → Blastocatellales → Pyrinomonadaceae → Pyrinomonas → Pyrinomonas methylaliphatogenes	2087	Open in IMG/M
3300012582\|Ga0137358_11090154	All Organisms → cellular organisms → Bacteria → Acidobacteria	510	Open in IMG/M
3300012685\|Ga0137397_10616248	All Organisms → cellular organisms → Bacteria → Acidobacteria	807	Open in IMG/M
3300012922\|Ga0137394_10620783	All Organisms → cellular organisms → Bacteria	913	Open in IMG/M
3300012923\|Ga0137359_11077033	All Organisms → cellular organisms → Bacteria	688	Open in IMG/M
3300012925\|Ga0137419_10599193	All Organisms → cellular organisms → Bacteria → Acidobacteria	885	Open in IMG/M
3300012930\|Ga0137407_12319753	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	513	Open in IMG/M
3300012944\|Ga0137410_10000934	All Organisms → cellular organisms → Bacteria	20080	Open in IMG/M
3300012961\|Ga0164302_10348936	All Organisms → cellular organisms → Bacteria → Acidobacteria	988	Open in IMG/M
3300013294\|Ga0120150_1017344	All Organisms → cellular organisms → Bacteria	1487	Open in IMG/M
3300013764\|Ga0120111_1000563	All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia → Blastocatellales → Pyrinomonadaceae → Pyrinomonas → Pyrinomonas methylaliphatogenes	18595	Open in IMG/M
3300014488\|Ga0182001_10008087	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	2209	Open in IMG/M
3300015069\|Ga0167633_101639	All Organisms → cellular organisms → Bacteria	5288	Open in IMG/M
3300015161\|Ga0167623_1000030	All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia → Blastocatellales → Pyrinomonadaceae → Pyrinomonas → Pyrinomonas methylaliphatogenes	121786	Open in IMG/M
3300015245\|Ga0137409_11544464	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	514	Open in IMG/M
3300015264\|Ga0137403_10053087	All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia → Blastocatellales → Pyrinomonadaceae → Pyrinomonas → Pyrinomonas methylaliphatogenes	4172	Open in IMG/M
3300018027\|Ga0184605_10006428	All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia → unclassified Blastocatellia → Blastocatellia bacterium	4304	Open in IMG/M
3300018052\|Ga0184638_1134231	All Organisms → cellular organisms → Bacteria → Acidobacteria	900	Open in IMG/M
3300018056\|Ga0184623_10257915	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	795	Open in IMG/M
3300018059\|Ga0184615_10228784	All Organisms → cellular organisms → Bacteria → Acidobacteria	1044	Open in IMG/M
3300018084\|Ga0184629_10142704	All Organisms → cellular organisms → Bacteria	1208	Open in IMG/M
3300018084\|Ga0184629_10686368	All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia → unclassified Blastocatellia → Blastocatellia bacterium	516	Open in IMG/M
3300018476\|Ga0190274_13371417	All Organisms → cellular organisms → Bacteria → Acidobacteria	538	Open in IMG/M
3300018920\|Ga0190273_12268778	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	512	Open in IMG/M
3300019789\|Ga0137408_1371503	All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia → Blastocatellales → Pyrinomonadaceae → Pyrinomonas → Pyrinomonas methylaliphatogenes	2351	Open in IMG/M
3300019882\|Ga0193713_1051305	All Organisms → cellular organisms → Bacteria	1186	Open in IMG/M
3300019883\|Ga0193725_1013109	All Organisms → cellular organisms → Bacteria	2328	Open in IMG/M
3300019998\|Ga0193710_1032145	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	529	Open in IMG/M
3300025910\|Ga0207684_10029750	All Organisms → cellular organisms → Bacteria → Acidobacteria	4650	Open in IMG/M
3300025934\|Ga0207686_11775944	All Organisms → cellular organisms → Bacteria → Acidobacteria	510	Open in IMG/M
3300025935\|Ga0207709_10524495	All Organisms → cellular organisms → Bacteria → Acidobacteria	928	Open in IMG/M
3300025942\|Ga0207689_10011916	All Organisms → cellular organisms → Bacteria → Acidobacteria	7450	Open in IMG/M
3300025942\|Ga0207689_10024611	All Organisms → cellular organisms → Bacteria → Acidobacteria	5049	Open in IMG/M
3300025942\|Ga0207689_11183857	All Organisms → cellular organisms → Bacteria → Acidobacteria	643	Open in IMG/M
3300025960\|Ga0207651_10059329	All Organisms → cellular organisms → Bacteria	2650	Open in IMG/M
3300026088\|Ga0207641_10012505	All Organisms → cellular organisms → Bacteria	6957	Open in IMG/M
3300026116\|Ga0207674_11014338	All Organisms → cellular organisms → Bacteria	799	Open in IMG/M
3300026121\|Ga0207683_10057343	All Organisms → cellular organisms → Bacteria	3419	Open in IMG/M
3300026142\|Ga0207698_11290034	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	745	Open in IMG/M
3300026142\|Ga0207698_11851692	All Organisms → cellular organisms → Bacteria → Acidobacteria	618	Open in IMG/M
3300026285\|Ga0209438_1022072	All Organisms → cellular organisms → Bacteria	2125	Open in IMG/M
3300026320\|Ga0209131_1000046	All Organisms → cellular organisms → Bacteria	107528	Open in IMG/M
3300026377\|Ga0257171_1009812	All Organisms → cellular organisms → Bacteria	1556	Open in IMG/M
3300026377\|Ga0257171_1027355	All Organisms → cellular organisms → Bacteria	973	Open in IMG/M
3300028379\|Ga0268266_11398967	All Organisms → cellular organisms → Bacteria → Acidobacteria	675	Open in IMG/M
3300031152\|Ga0307501_10025375	All Organisms → cellular organisms → Bacteria	1166	Open in IMG/M
3300031731\|Ga0307405_10404136	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	1070	Open in IMG/M
3300031740\|Ga0307468_100023794	All Organisms → cellular organisms → Bacteria → Acidobacteria	2773	Open in IMG/M
3300031740\|Ga0307468_100282527	All Organisms → cellular organisms → Bacteria	1192	Open in IMG/M
3300034000\|Ga0334918_023299	All Organisms → cellular organisms → Bacteria → Acidobacteria	861	Open in IMG/M
3300034174\|Ga0334932_000001	All Organisms → cellular organisms → Bacteria	890101	Open in IMG/M
3300034176\|Ga0364931_0159822	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	728	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	70.18%
Host-Associated	Host-Associated	29.82%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	61.40%
Plants	Host-Associated → Plants	29.82%
Aquatic	Environmental → Aquatic	8.77%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	60.53%
Rhizoplane	Host-Associated → Plants → Rhizoplane	15.79%
Rhizosphere	Host-Associated → Plants → Rhizosphere	14.04%
Sediment	Environmental → Aquatic → Sediment	7.89%
Freshwater	Environmental → Aquatic → Freshwater	0.88%
Floodplain	Environmental → Terrestrial → Floodplain	0.88%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	47.37%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	13.16%
Loam	Environmental → Terrestrial → Soil → Loam	12.28%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	7.89%
Soil	Host-Associated → Plants → Rhizosphere → Soil	7.89%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	6.14%
Soil	Host-Associated → Plants → Rhizoplane → Soil	1.75%
Wetlands	Environmental → Aquatic → Freshwater → Wetlands	0.88%
Soil Crust	Environmental → Terrestrial → Soil → Soil Crust	0.88%
Sediment	Environmental → Terrestrial → Floodplain → Sediment	0.88%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	0.88%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	32.46%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	13.16%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	12.28%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	7.89%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	7.89%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	6.14%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	4.39%
Permafrost	Environmental → Terrestrial → Soil → Unclassified → Permafrost	3.51%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	3.51%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	2.63%
Unclassified	Host-Associated → Plants → Rhizoplane → Soil → Unclassified	1.75%
Unclassified	Environmental → Aquatic → Freshwater → Wetlands → Unclassified	0.88%
Desert	Environmental → Terrestrial → Soil → Unclassified → Desert	0.88%
Unclassified	Environmental → Terrestrial → Soil → Soil Crust → Unclassified	0.88%
Unclassified	Environmental → Terrestrial → Floodplain → Sediment → Unclassified	0.88%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	0.88%

Habitat	Taxonomy	Distribution
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	15.79%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	11.40%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	6.14%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere	6.14%
Groundwater Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment	5.26%
Terrestrial Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil	5.26%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	5.26%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil	4.39%
Corn Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn Rhizosphere	4.39%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	4.39%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Miscanthus Rhizosphere	4.39%
Permafrost	Environmental → Terrestrial → Soil → Unclassified → Permafrost → Permafrost	3.51%
Soil	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Soil	2.63%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	2.63%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	2.63%
Glacier Forefield Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Glacier Forefield Soil	1.75%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	1.75%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	1.75%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Soil → Unclassified → Miscanthus Rhizosphere	1.75%
Wetland Sediment	Environmental → Aquatic → Freshwater → Wetlands → Unclassified → Wetland Sediment	0.88%
Serpentine Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Serpentine Soil	0.88%
Sub-Biocrust Soil	Environmental → Terrestrial → Soil → Unclassified → Desert → Sub-Biocrust Soil	0.88%
Switchgrass Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Switchgrass Rhizosphere	0.88%
Hypolithic Biocrust	Environmental → Terrestrial → Soil → Soil Crust → Unclassified → Hypolithic Biocrust	0.88%
Sediment	Environmental → Terrestrial → Floodplain → Sediment → Unclassified → Sediment	0.88%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Miscanthus Rhizosphere	0.88%
Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Rhizosphere	0.88%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Miscanthus Rhizosphere	0.88%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Corn Rhizosphere	0.88%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
2124908006	Soil microbial communities from sample at FACE Site Metagenome WIR_Oz2	Environmental	Open in IMG/M
3300000887	Permafrost active layer microbial communities from McGill Arctic Research Station, Canada - (A3-65cm-16A)- 1 week illumina	Environmental	Open in IMG/M
3300001326	Permafrost active layer microbial communities from McGill Arctic Research Station, Canada - (A28-35cm)- 6 month illumina	Environmental	Open in IMG/M
3300002886	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 9_17_2013_20cm	Environmental	Open in IMG/M
3300002897	Soil microbial communities from Manhattan, Kansas, USA - Sample 500um Nextera	Environmental	Open in IMG/M
3300002907	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 9_17_2013_40cm	Environmental	Open in IMG/M
3300004156	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Combined assembly of AARS Block 1	Environmental	Open in IMG/M
3300004479	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of All WPAs	Environmental	Open in IMG/M
3300004778	Wetland sediment microbial communities from St. Louis River estuary, USA, under dissolved organic matter induced mercury methylation - T4Bare3Fresh	Environmental	Open in IMG/M
3300005293	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, MSU, sample Bulk Soil Replicate 1 : eDNA_1	Host-Associated	Open in IMG/M
3300005330	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3H metaG	Environmental	Open in IMG/M
3300005331	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-3 metaG	Host-Associated	Open in IMG/M
3300005334	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M5-2	Host-Associated	Open in IMG/M
3300005345	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-10-2 metaG	Environmental	Open in IMG/M
3300005353	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-3 metaG	Host-Associated	Open in IMG/M
3300005354	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-3 metaG	Host-Associated	Open in IMG/M
3300005355	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S7-3 metaG	Host-Associated	Open in IMG/M
3300005364	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-3 metaG	Host-Associated	Open in IMG/M
3300005440	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-3 metaG	Environmental	Open in IMG/M
3300005441	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-1 metaG	Environmental	Open in IMG/M
3300005444	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-1 metaG	Environmental	Open in IMG/M
3300005456	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M7-3 metaG	Host-Associated	Open in IMG/M
3300005467	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG	Environmental	Open in IMG/M
3300005471	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-2 metaG	Environmental	Open in IMG/M
3300005518	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-3 metaG	Environmental	Open in IMG/M
3300005546	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-3 metaG	Environmental	Open in IMG/M
3300005548	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG	Host-Associated	Open in IMG/M
3300005549	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-2 metaG	Environmental	Open in IMG/M
3300005564	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3 metaG	Host-Associated	Open in IMG/M
3300005577	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2	Host-Associated	Open in IMG/M
3300005616	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2	Host-Associated	Open in IMG/M
3300005617	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2	Host-Associated	Open in IMG/M
3300005618	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S7-2	Host-Associated	Open in IMG/M
3300005719	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2	Host-Associated	Open in IMG/M
3300009036	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-4 metaG	Host-Associated	Open in IMG/M
3300009137	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_158	Environmental	Open in IMG/M
3300009148	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG	Host-Associated	Open in IMG/M
3300009176	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-4 metaG	Host-Associated	Open in IMG/M
3300010045	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot61	Environmental	Open in IMG/M
3300010373	Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-4	Environmental	Open in IMG/M
3300010396	Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-2	Environmental	Open in IMG/M
3300010399	Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-3	Environmental	Open in IMG/M
3300010400	Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-2	Environmental	Open in IMG/M
3300010403	Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-3	Environmental	Open in IMG/M
3300011119	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M6-4 metaG	Host-Associated	Open in IMG/M
3300011438	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMGT500_2	Environmental	Open in IMG/M
3300011444	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMGT800_2	Environmental	Open in IMG/M
3300012198	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_L_20_16 metaG	Environmental	Open in IMG/M
3300012199	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_40_16 metaG	Environmental	Open in IMG/M
3300012353	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_L_80_16 metaG	Environmental	Open in IMG/M
3300012354	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_L_60_16 metaG	Environmental	Open in IMG/M
3300012355	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_L_113_16 metaG	Environmental	Open in IMG/M
3300012360	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_R_113_16 metaG	Environmental	Open in IMG/M
3300012362	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_80_16 metaG	Environmental	Open in IMG/M
3300012532	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_R_80_16 metaG	Environmental	Open in IMG/M
3300012582	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_20_16 metaG	Environmental	Open in IMG/M
3300012685	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czorhiz1.16 metaG	Environmental	Open in IMG/M
3300012922	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czobulk1.16 metaG	Environmental	Open in IMG/M
3300012923	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_40_16 metaG	Environmental	Open in IMG/M
3300012925	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_2_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012930	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_2_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012944	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug1_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012961	Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_202_MG	Environmental	Open in IMG/M
3300013294	Permafrost microbial communities from Nunavut, Canada - A3_65cm_0M	Environmental	Open in IMG/M
3300013764	Permafrost microbial communities from Nunavut, Canada - A28_35cm_6M	Environmental	Open in IMG/M
3300014488	Bulk soil microbial communities from Mexico - San Felipe (SF) metaG	Environmental	Open in IMG/M
3300015069	Arctic soil microbial communities from a glacier forefield, Russell Glacier, Kangerlussuaq, Greenland (Sample G4C, Ice margin, adjacent to proglacial lake	Environmental	Open in IMG/M
3300015161	Arctic soil microbial communities from a glacier forefield, Russell Glacier, Kangerlussuaq, Greenland (Sample G1B, Ice margin)	Environmental	Open in IMG/M
3300015245	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug1_16fungal (Hybrid Assembly)	Environmental	Open in IMG/M
3300015264	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_1_16fungal (Hybrid Assembly)	Environmental	Open in IMG/M
3300018027	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM0_30_coex	Environmental	Open in IMG/M
3300018052	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3-1_50_b2	Environmental	Open in IMG/M
3300018056	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM1_100_b1	Environmental	Open in IMG/M
3300018059	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM4_65_coex	Environmental	Open in IMG/M
3300018084	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM4_32_b1	Environmental	Open in IMG/M
3300018476	Populus adjacent soil microbial communities from riparian zone of Yellowstone River, Montana, USA - 531 T	Environmental	Open in IMG/M
3300018920	Populus adjacent soil microbial communities from riparian zone of Shoshone River, Wyoming, USA - 504 IS	Environmental	Open in IMG/M
3300019789	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_2_16fungal (PacBio error correction)	Environmental	Open in IMG/M
3300019882	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? H3a2	Environmental	Open in IMG/M
3300019883	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? H2a2	Environmental	Open in IMG/M
3300019998	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? H3m1	Environmental	Open in IMG/M
3300025910	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG (SPAdes)	Environmental	Open in IMG/M
3300025934	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025935	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025942	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M5-2 (SPAdes)	Host-Associated	Open in IMG/M
3300025960	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300026088	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026116	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026121	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M7-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300026142	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026285	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 9_17_2013_20cm (SPAdes)	Environmental	Open in IMG/M
3300026320	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 9_17_2013_40cm (SPAdes)	Environmental	Open in IMG/M
3300026377	Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - DW-10-B	Environmental	Open in IMG/M
3300028379	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300031152	Soil microbial communities from Populus trichocarpa stands in riparian zone in the Pacific Northwest, United States - 15_S	Environmental	Open in IMG/M
3300031731	Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-1	Host-Associated	Open in IMG/M
3300031740	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gases AM2C_05	Environmental	Open in IMG/M
3300034000	Biocrust microbial communities from Mojave Desert, California, United States - 14HMC	Environmental	Open in IMG/M
3300034174	Sub-biocrust soil microbial communities from Mojave Desert, California, United States - 28HNS	Environmental	Open in IMG/M
3300034176	Sediment microbial communities from East River floodplain, Colorado, United States - 21_j17	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
FWIROz_05568950	2124908006	Soil	HGGGNLSAGTLRVFGFLFLVAAAVVAILNLKRVANLGMMWLSPPLMIIGIAFVAMAGRRK
AL16A1W_100955402	3300000887	Permafrost	MVAAAVVAVLNLKRVANLGMLWLSPPLLIVGMVFVALAKRHK*
A2835W6_10537561	3300001326	Permafrost	MVAAAVVAVLNLKRVANLGMLWLSPPLLIVGMVFV
JGI25612J43240_10389992	3300002886	Grasslands Soil	LSATALRLIGILFMVAAAVVVLNLKRVANLGMLGLSAPLLIIGMGFLAASRRKAQRPPD*
JGI24804J43974_10084431	3300002897	Soil	LSAKTLRLLGIVCLIAAAIVAVLNLKRVADLGAFWLSAPLLVIGIGLVAASRRKADRLGP
JGI25613J43889_100007963	3300002907	Grasslands Soil	MVAAAVVVLNLKRVANLGMLGLSAPLLIIGMGFLAASRRKAQRPPD*
Ga0062589_1000678082	3300004156	Soil	LSAQTLRLLGIIILVAAAVIALLNLKRTANLGMLWLNALLVIGIALIVAARRRS*
Ga0062589_1010944892	3300004156	Soil	VSAKTLRLLGIVCLIAAAIVAVLNLKRVANLGMFWLSPPLLVVGLGFIAAARRKS*
Ga0062595_1012044061	3300004479	Soil	LSATTLRLIGFLFLVAAAIVAIMNLKRVANLGMVWLSPPLMILGIVLLAASRRKA*
Ga0062383_101805181	3300004778	Wetland Sediment	LSASTLRVIGFLFLVAAAVVAVLNLKRVANLGMIWLSPPLMIIGIALVAMAGRESENGLL
Ga0065715_108223551	3300005293	Miscanthus Rhizosphere	RLIGFLFLVAAAIVAIMNLKRVANLGMVWLSPPLMILGIVLLAASRRKA*
Ga0070690_1006017912	3300005330	Switchgrass Rhizosphere	LSPTTLRIIGILFLVAAAVVAVLNLKRVANLGMMWLSPPLLIFGLALVAIAARRR*
Ga0070670_10000385811	3300005331	Switchgrass Rhizosphere	LSPTTLRIIGILFLVAAAVVAVLNLKRVANLGMVWLSPPLLILGLALVAVAARRR*
Ga0068869_1000037998	3300005334	Miscanthus Rhizosphere	MAAAAVVGILNLKRVANLGMLGLSAPLLIIGMGFLAASRRRARG*
Ga0068869_1000091082	3300005334	Miscanthus Rhizosphere	MVAAAVVAVLNLKRVANLGMLGLSAPLLIVGMGFLAASRRKAQRPPH*
Ga0070692_105280401	3300005345	Corn, Switchgrass And Miscanthus Rhizosphere	LSAQTLRILGILMLVAAAVIAILNLKRVANLGLLWLNAPLLVIGIALIVAARRRA*
Ga0070669_1009590951	3300005353	Switchgrass Rhizosphere	MEVANLSPATLRGIGIGFLVAAVVIALLNLKRVANLGMLWLNAPLLVIGVALIFLARRRS
Ga0070675_1004642082	3300005354	Miscanthus Rhizosphere	MDKTLSAKTLRLLGIVCLIAAAVVAVLNLKRVANLGIFWLSAPLLVIGIGLVAASRRRSIP*
Ga0070671_1004520382	3300005355	Switchgrass Rhizosphere	VSPTTLRIIGILFLVAAAVVAVLNLKRVANLGMVWLSPPLLILGLALVAIAARRR*
Ga0070673_1003322314	3300005364	Switchgrass Rhizosphere	LSPKTLRVLGILLLVAAAIVAVLNLKRVANLGMMWLSPPLLIVGLALVAIAARRRR*
Ga0070705_1008487911	3300005440	Corn, Switchgrass And Miscanthus Rhizosphere	LSATTLRVIGILVLVTAAVVAVLNLKRVANLGMMWLSPPLLIVGVALVTLAARKK*
Ga0070700_1000929271	3300005441	Corn, Switchgrass And Miscanthus Rhizosphere	TLRIIGILFLVAAAVVAVLNLKRVANLGMMWLSPPLLIFGLALVAIAARRR*
Ga0070694_1003067882	3300005444	Corn, Switchgrass And Miscanthus Rhizosphere	VSPATLRGIGIGFLVAAVVIALLNLKRVANLGMLWLNAPLLVIGIALIFLARRRT*
Ga0070694_1006097542	3300005444	Corn, Switchgrass And Miscanthus Rhizosphere	RVIGILVLVTAAVVAVLNLKRVANLGMMWLSPPLLIVGVALVTLAARKK*
Ga0070678_1016290661	3300005456	Miscanthus Rhizosphere	LSVTALRLIGILFMVAAAVVAVLNLKRVANLGMLGLSAPLLIIGMGFLAASRRTAKRPPP
Ga0070706_1000422822	3300005467	Corn, Switchgrass And Miscanthus Rhizosphere	VIGILVLVTAAVVAVLNLKRLANLGMMWLSPPLLIVGVGLVTLAARKK*
Ga0070698_1000244577	3300005471	Corn, Switchgrass And Miscanthus Rhizosphere	LSATALRVIGILFMVAAAVVAVLNLKRVANLGMLGLSAPLLVIGMGFLAASRRKAQRPPH
Ga0070699_1000579853	3300005518	Corn, Switchgrass And Miscanthus Rhizosphere	VIGILVLVTAAVVAVLNLKRVANLGMMWLSPPLLIVGVALVTLAARKK*
Ga0070699_1008962582	3300005518	Corn, Switchgrass And Miscanthus Rhizosphere	LSSKTLRVIGILLLVAAAVVAVMNLKRVANLGMLWLSPPLLIVGIAFVALAARRK*
Ga0070696_1000791493	3300005546	Corn, Switchgrass And Miscanthus Rhizosphere	LSAQTLRILGILILVAAAVIAVLNLKRVANLGMLWLNAPLLVIGIALIVAARRRSL*
Ga0070696_1003462992	3300005546	Corn, Switchgrass And Miscanthus Rhizosphere	LSAQTLRILGILMLLAAAVIAVLNLKRVANLGMLWLNAPLLVIGIALIVAARRRA*
Ga0070665_1006668522	3300005548	Switchgrass Rhizosphere	LSAKTVRLLGIVCLIAAAIVAVLNLKRVANLGTFWLSAPLLVIGIGLVAASRRKT*
Ga0070704_1013585141	3300005549	Corn, Switchgrass And Miscanthus Rhizosphere	VSPATLRGIGIGFLVAAVVIALLNLKRVANLGMLWLNAPLLVIGVALILLARRRT*
Ga0070664_1001533372	3300005564	Corn Rhizosphere	VSATTFRVIGILFMAAAAVVGILNLKRVANLGMLGLSAPLLIIGMGFLAASRRRARG*
Ga0068857_1011036182	3300005577	Corn Rhizosphere	LSPKTLRVLGILLLVAAAIVAVLNLKRVANLGMVWLSPPLLIVGLALVAIAARRR*
Ga0068852_1018963561	3300005616	Corn Rhizosphere	VLGILLLVCAAVVAVLNLKRVANLGMMWLSPPLLIIGLALVAIAARRR*
Ga0068859_1014730522	3300005617	Switchgrass Rhizosphere	LVAAAILAVLNLKRVANLGMMWLSPPLLIVGLALVAIAARRRR*
Ga0068864_1018857261	3300005618	Switchgrass Rhizosphere	VSATTFRVIGILFMAAAAVVGILNLKRVANLGMLGLSAPLLIIGMGFLAASRRRAR
Ga0068861_1008006211	3300005719	Switchgrass Rhizosphere	LSPTTLRIIGILFLVAAAVVAVLNLKRVANLGMVWLSPPLLIVGLALVAIAARRR*
Ga0068861_1012247741	3300005719	Switchgrass Rhizosphere	LSAKTLRILGFVFLVAAAVVAILNLKRVAGLGMFWLSAPLLIVGVALMASSRRKSTLS*
Ga0105244_103727422	3300009036	Miscanthus Rhizosphere	LVAAAIVAVLNLKRVANLGMVWLSPPLLIVGLALVAIAARRR*
Ga0066709_1016825302	3300009137	Grasslands Soil	VIGILFLVAAAVVAVLNLKRVANLGMLWLNAPLLVIGILFVGLSARRK*
Ga0105243_111134792	3300009148	Miscanthus Rhizosphere	VQPGGKNNLSPTTLRIIGILFLVAAAVVAVLNLKRVANLGMMWLSPPLLIVGLALVAIAARRRR*
Ga0105242_127500602	3300009176	Miscanthus Rhizosphere	MVAAALVAVLNLKRVANLGMLGLSAPLVIIGMGFLAASRRTAKRPPP*
Ga0126311_116353891	3300010045	Serpentine Soil	IGIVFLVAAAVLAILNLKRVANLGMFWVSPPLMIIGLAFVTLARRRG*
Ga0134128_119527821	3300010373	Terrestrial Soil	MEVANLSPAMLRGIGIGFLVAAVVIALLNLKRVANLGMLWLNAPLLVIGVALIFLARRRS
Ga0134126_101001973	3300010396	Terrestrial Soil	LSVTTLRVIGLLFLVTAAVVAVLNLKRVANLGMMWLSPPLLIVGVALVALAARKK*
Ga0134127_101880853	3300010399	Terrestrial Soil	VAAAVVAVLNLKRVANLGMMWLSPPLLIFGLALVAIAARRR*
Ga0134122_108478711	3300010400	Terrestrial Soil	MVAAAVVAVLNLKRVANLGMLGLSAPLLIIGMGFLAVSRRTAKRPPP*
Ga0134122_116784312	3300010400	Terrestrial Soil	MVAAAFVAVLNLKRVANLGMLLRSAPLLVIGMGFLAASRKKSQRPPT*
Ga0134123_135280781	3300010403	Terrestrial Soil	SHCFVEPESGGTITLSPTTLRIIGILFLVAAAVVAVLNLKRVANLGMMWLSPPLLIFGLALVAIAARRR*
Ga0105246_110216791	3300011119	Miscanthus Rhizosphere	VQPGGKNNLSPTTLRIIGILFLVAAAVVAVLNLKRVANLGMMWLSPPLLIMGLALVAIAARRR*
Ga0137451_11579522	3300011438	Soil	LSATTLRVIGILFLVAAAVVAVLNLKRVANLGMVWLSPPLLIVGMAFVVLAARRK*
Ga0137463_10093921	3300011444	Soil	VIGILFLVAAAVVAVLNLKRVANLGMLWLSPPLLIVGIAFVTLAARRK*
Ga0137463_10612682	3300011444	Soil	VVGILFLVTAAVVAVLNLKRVANLGMMWLSPPLLIVGLAFVALAARRK*
Ga0137364_101557251	3300012198	Vadose Zone Soil	MIGILFLVAAAVVAVLNLKRVANLGMLWLSPPLLIVGVAFVALAGRRK*
Ga0137383_103076702	3300012199	Vadose Zone Soil	MSAKTLRMIGILFLVAAAVVAVLNLKRVANLGMLWLSPPLLIVGVAFVALAGRRK*
Ga0137367_100844302	3300012353	Vadose Zone Soil	VIGILFLVAAGVVAVLNLKRVANLGMLWLNAPLLVIGIAFIAMSARRK*
Ga0137366_106844331	3300012354	Vadose Zone Soil	VIGILFLVTAAVVAILNLKRVANLGMLWLNAPLLVIGIAFVALSGRRK*
Ga0137369_100806194	3300012355	Vadose Zone Soil	VIGILFLVAAAVVAVLNLKRVANLGMLWLNAPLLVIGIAFIAMSARRK*
Ga0137375_104881761	3300012360	Vadose Zone Soil	VIGILFLVAAAVVAVLNLKRVANLGMLWLNAPLLVIGIAFMAMSARRK*
Ga0137361_102143372	3300012362	Vadose Zone Soil	MSAKTLRMIGILFLVAAAVVAVLNLKRVANLGMMWLSPPLLIVGVAFVALAGRRK*
Ga0137373_101367013	3300012532	Vadose Zone Soil	RVIGILLLVTAAAVAVLNLKRVANLGMLWLSPPLLIAGIAFVALAGRRK*
Ga0137358_110901541	3300012582	Vadose Zone Soil	VIGFLFLVAAMVIAVLNLKRVANLGMLWLNAPLLVIGVA
Ga0137397_106162481	3300012685	Vadose Zone Soil	VIGFLFLVAAAVVAVLNLQRVANLGMMWLPPPLLIVGLAFVGLA
Ga0137394_106207832	3300012922	Vadose Zone Soil	VIGFLFLVAAAVVAVLNLKRVADLGMMWLSPPLLIVGIAFVTLAARKK*
Ga0137359_110770332	3300012923	Vadose Zone Soil	VLGILVLATAAVIAVLNLKRVANLGMLWLNAPLLVIGVALIVLARRRT*
Ga0137419_105991932	3300012925	Vadose Zone Soil	VIGFLFLVAAMVIAVLNLKRVANLGMLWLNAPLLVIGVALIVLARRRT*
Ga0137407_123197532	3300012930	Vadose Zone Soil	KILSATTLRVIGILFLVSAAVVAVLNLKRVANLGMMWLSPPLLIVGVALVTLAARKK*
Ga0137410_100009348	3300012944	Vadose Zone Soil	VIGILFLVAAAVVAVLNLKRVANLGMLWLNAPLLVIGILFVALSARRR*
Ga0164302_103489362	3300012961	Soil	VILVLVAAAVVAVLNLKRVANLGMMWLSPPLLIVGIALITLAARKK*
Ga0120150_10173441	3300013294	Permafrost	FMVAAAVVAVLNLKRVANLGMLWLSPPLLIVGMVFVVLAKRRK*
Ga0120111_10005635	3300013764	Permafrost	MVAAAVVAVLNLKRVANLGMLWLSPPLLIVGMVFVVLAKRRK*
Ga0182001_100080873	3300014488	Soil	VSPTALRLIGIILLVAAAVLAVLNLKRVANLGTFWLGAPLLILGVAFVTLARRRR*
Ga0167633_1016393	3300015069	Glacier Forefield Soil	MIGVLFLVSAAVVAVLNLKRVANLGMMWLSPPLLIVGLAFVAMAARKK*
Ga0167623_100003070	3300015161	Glacier Forefield Soil	MSPKTLSLIGILFLVAAAVVAVLNLKRVADLGMLWLSPILLIFGAALLALSRRQGNSSSR
Ga0137409_115444641	3300015245	Vadose Zone Soil	LSAKTLRVIGILVLVAAAVVAVLNLKRVANLGMLWLSPPLLIVGVALLALAARKK*
Ga0137403_100530871	3300015264	Vadose Zone Soil	LDNYRIMEVENLSATTLRVIGILFLVAAAVVAVLNLKRVANLGMVWLSPPLLIVGMAFVVLAARRK*
Ga0184605_100064282	3300018027	Groundwater Sediment	VIGFLFLVAAAVVAVLNLKRVANLGMMWLSPPLMIVGLAFVAFAARKK
Ga0184638_11342312	3300018052	Groundwater Sediment	LSGKTLRLIGILVLVAGATVAVLNLKRVADLRMIWLPPVLLVIGIGLVVNSRRR
Ga0184623_102579152	3300018056	Groundwater Sediment	VIGILVLVAAAVVAVLNLKRVANLGMMWLSPPLLIVGLALVTLAARKK
Ga0184615_102287841	3300018059	Groundwater Sediment	LSATTLRVIGILFLVAAAVVAILNLKRVANLGMLWLNAPLLVIGIAFVV
Ga0184629_101427041	3300018084	Groundwater Sediment	VIGILFLVAAAVVAVLNLKRVANLGMLWLSPPLLIVGIVFVTLAGRRK
Ga0184629_106863681	3300018084	Groundwater Sediment	VIGILVLVTAAVVAVLNLKRVANLGMMWLSPPLLIVGVALVALAARKK
Ga0190274_133714172	3300018476	Soil	MRAIGIGFLVAAVVIALLNLKRVANLGMLWLNAPLLVIGVALILLARRRR
Ga0190273_122687782	3300018920	Soil	GFLFLVTAAIVAVMNLKRVANLGMMWLSPPLMIVGLAFVAFAARKK
Ga0137408_13715033	3300019789	Vadose Zone Soil	MEVENLSATTLRVIGILFLVAAAVVAVLNLKRVANLGMVWLSPPLLIVGMAFVVLAARRK
Ga0193713_10513051	3300019882	Soil	TTLGVIGILVLVTAAVVAVLNLKRVANLGMMWLSPPLLIVGVALVTLAARKK
Ga0193725_10131092	3300019883	Soil	VIGILFLVAAAVVAVLNLKRVANLGMTWLSPPLLIVGVALFTLAARKK
Ga0193710_10321452	3300019998	Soil	SEDKNLSATTLRVIGILVLVTAAVVAVLNLKRVANLGMMWLSPPLLIVGVALVTLAARKK
Ga0207684_100297503	3300025910	Corn, Switchgrass And Miscanthus Rhizosphere	VIGILVLVTAAVVAVLNLKRLANLGMMWLSPPLLIVGVGLVTLAARKK
Ga0207686_117759442	3300025934	Miscanthus Rhizosphere	LSATTLRLIGFLFLVAAAIVAIMNLKRVANLGMVWLSPPLMILG
Ga0207709_105244951	3300025935	Miscanthus Rhizosphere	VQPGGKNNLSPTTLRIIGILFLVAAAVVAVLNLKRVANLGMMWLSPPLLIVGLALVAIAARRRR
Ga0207689_100119162	3300025942	Miscanthus Rhizosphere	VSATTFRVIGILFMAAAAVVGILNLKRVANLGMLGLSAPLLIIGMGFLAASRRRARG
Ga0207689_100246113	3300025942	Miscanthus Rhizosphere	MVAAAVVAVLNLKRVANLGMLGLSAPLLIVGMGFLAASRRKAQRPPH
Ga0207689_111838572	3300025942	Miscanthus Rhizosphere	LSAQTLRILGILMLVAAAVIAILNLKRVANLGLLWLNAPLLVIGIALIVAARRRA
Ga0207651_100593291	3300025960	Switchgrass Rhizosphere	LSPKTLRVLGILLLVAAAIVAVLNLKRVANLGMMWLSPPLLIVGLALVAIAARRRR
Ga0207641_100125053	3300026088	Switchgrass Rhizosphere	VSPTTLRIIGILFLVAAAVVAVLNLKRVANLGMVWLSPPLLILGLALVAIAARRR
Ga0207674_110143382	3300026116	Corn Rhizosphere	LSPKTLRVLGILLLVAAAIVAVLNLKRVANLGMVWLSPPLLIVGLALVAIAARRR
Ga0207683_100573431	3300026121	Miscanthus Rhizosphere	TALRLIGILFMVAAAVVAVLNLKRVANLGMLGLSAPLLIIGMGFLAASRRTAKRPPP
Ga0207698_112900341	3300026142	Corn Rhizosphere	WAGSNQNGGKTLSAKTLRLLGIVCLIAAAIVAVLNLKRVANLGIFWLSAPLLVIGIALVTASRRRS
Ga0207698_118516922	3300026142	Corn Rhizosphere	LSAKTLRVLGILLLVCAAVVAVLNLKRVANLGMMWLSPPLLIIGLALVAIAARRR
Ga0209438_10220721	3300026285	Grasslands Soil	MVAAAVVVLNLKRVANLGMLGLSAPLLIIGMGFLAASRRKAQRPPD
Ga0209131_100004678	3300026320	Grasslands Soil	LSATALRLIGILFMVAAAVVVLNLKRVANLGMLGLSAPLLIIGMGFLAASRRKAQRPPD
Ga0257171_10098125	3300026377	Soil	VIGILFLVAAAVVAVLNLKRVANLGMLWLNAPLLVIGIAFVVLAARRK
Ga0257171_10273552	3300026377	Soil	PLPNNGGRNLSATTLRVIGILFLVAAAVVAVLNLKRVANLGMVWLSPPLLIVGMAFVVLARRK
Ga0268266_113989672	3300028379	Switchgrass Rhizosphere	LSAKTVRLLGIVCLIAAAIVAVLNLKRVANLGTFWLSAPLLVIGIGLVAASRRKT
Ga0307501_100253752	3300031152	Soil	MTRQATHTNYSTEVMNLSSKTLRFLGILLLVAAAVVAVLNLKRVANLGMMWLSPPLLIIGLALVAIAARRR
Ga0307405_104041363	3300031731	Rhizosphere	IAAIISAVLNLKRVADLGMTWLTPVLLICGVVLVAAAKRRRA
Ga0307468_1000237942	3300031740	Hardwood Forest Soil	LSPTALRVIGILFLVSAAVVAILNLKRVANLGLMWLSPVLLVVGIAFVVNARRRS
Ga0307468_1002825272	3300031740	Hardwood Forest Soil	VIGFLFIVAAAVVAILNLKRVANLGMMWLSPPLLIVGIAFVSLALRQKKGT
Ga0334918_023299_279_446	3300034000	Hypolithic Biocrust	LSPNILRLIGIIFLLAAAVLAVLNLKRVANLGLPWLSPPLMIIGMAFVIMARRQK
Ga0334932_000001_198427_198573	3300034174	Sub-Biocrust Soil	LIGIVLLIAAAVLAVLNLKRVANLGTFWSVPPLLILGIAFVTLARRRR
Ga0364931_0159822_537_683	3300034176	Sediment	VIGILVLVTAAVVAVLNLKRVANLGMMWLSPPLLIVGVALVTLAARKK

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome Family F080821

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences