3300001150: Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM1H0_M1

Overview

Basic Information

• IMG/M Taxon OID: 3300001150
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0071004 | Gp0055379 | Ga0002981
• Sample Name: Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM1H0_M1
• Sequencing Status: Permanent Draft
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 19195168
• Sequencing Scaffolds: 15
• Novel Protein Genes: 16
• Associated Families: 16

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria	2
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1
Not Available	5
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	1
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Basidiomycota → Agaricomycotina → Agaricomycetes → Agaricomycetes incertae sedis → Polyporales → Fibroporiaceae → Fibroporia → Fibroporia radiculosa	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	2
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Thiotrichales → Thiotrichaceae → Thiomargarita → Candidatus Thiomargarita nelsonii	1
All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Forest Soil Microbial Communities From Multiple Locations In Canada And Usa
• Type: Environmental
• Taxonomy: Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil → Forest Soil Microbial Communities From Multiple Locations In Canada And Usa

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): forest biome → solid layer → forest soil
• Earth Microbiome Project Ontology (EMPO): Free-living → Non-saline → Soil (non-saline)

Location Information

• Location: Algoma, Ontario, Canada
• Coordinates
  • Lat. (^o): 46.42
  • Long. (^o): -83.37
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000083	Metagenome / Metatranscriptome	2471	Y
F000915	Metagenome / Metatranscriptome	836	Y
F005494	Metagenome / Metatranscriptome	399	Y
F008403	Metagenome	334	Y
F015950	Metagenome / Metatranscriptome	251	Y
F016972	Metagenome / Metatranscriptome	243	Y
F022481	Metagenome / Metatranscriptome	214	Y
F022726	Metagenome / Metatranscriptome	213	Y
F023941	Metagenome / Metatranscriptome	208	Y
F036449	Metagenome / Metatranscriptome	170	Y
F053913	Metagenome / Metatranscriptome	140	Y
F055301	Metagenome / Metatranscriptome	139	Y
F057773	Metagenome / Metatranscriptome	136	Y
F059929	Metagenome / Metatranscriptome	133	Y
F082780	Metagenome / Metatranscriptome	113	Y
F086733	Metagenome	110	Y

Associated Scaffolds

Scaffold	Taxonomy	Length
JGI12672J13324_100266	All Organisms → cellular organisms → Bacteria	1596
JGI12672J13324_100815	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1081
JGI12672J13324_101420	Not Available	846
JGI12672J13324_102737	Not Available	647
JGI12672J13324_102775	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	643
JGI12672J13324_102816	Not Available	639
JGI12672J13324_102835	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Basidiomycota → Agaricomycotina → Agaricomycetes → Agaricomycetes incertae sedis → Polyporales → Fibroporiaceae → Fibroporia → Fibroporia radiculosa	637
JGI12672J13324_103068	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	617
JGI12672J13324_103370	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Thiotrichales → Thiotrichaceae → Thiomargarita → Candidatus Thiomargarita nelsonii	594
JGI12672J13324_103530	Not Available	582
JGI12672J13324_103753	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales	566
JGI12672J13324_104190	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	545
JGI12672J13324_104252	All Organisms → cellular organisms → Bacteria	542
JGI12672J13324_104437	Not Available	533
JGI12672J13324_104834	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	516

Sequences

Scaffold ID	Protein ID	Family	Sequence
JGI12672J13324_100266	JGI12672J13324_1002661	F023941	DSPLEEAGFELVWGFSCQVVVLGFAESSLFGAGKPFFIPSPAIRFPERAEGVKGPKR*
JGI12672J13324_100815	JGI12672J13324_1008151	F022481	LVDRKVRASLVIQQRLRTPTGPFFARFFIGIILGLVAEFAFMRPSRRLTMSSFAARWMGRKQNVGGKFQHGCSTGRHALTLSL*
JGI12672J13324_101420	JGI12672J13324_1014201	F059929	MESSVLSEVDDTSILRTGLPTPLCLSSQLATGLSPRAPRSGLERSDFVLW
JGI12672J13324_102737	JGI12672J13324_1027371	F055301	MNSIRPDALASLLLKGEAKNGNRPVKGERTFRDLSLESTVSSRIGMHGVVGDRMVRSWSDMNQGSRSGEERRSWPLGGPEEPRPEGDRASV
JGI12672J13324_102775	JGI12672J13324_1027752	F082780	MLVAVNLKGATGFDVGYEPSGACRGAVPSLILLQIIVANDDNYALAA*
JGI12672J13324_102816	JGI12672J13324_1028162	F036449	GRVRMTAIRCDGGNNEQISMPLAELNDLTFRLIPGHPVAPVGLWSRSRDILMWRSPQFLSVDVIGEWPARNTKTAPVSTAILRHLREIMSLGARLTKLEARQRCLAEVPKAYPGAFEKAWAELEPSCKRGRGKHGPRGH*
JGI12672J13324_102835	JGI12672J13324_1028351	F016972	LTVNDIYKISFGAKTSRYGPHGLGYRRATKTFTK*
JGI12672J13324_103068	JGI12672J13324_1030681	F005494	VATEAAPALSEPAPNEWPHGTRVMVRKRKSWREATIISRLDPDLWRAEYPGGGSGMFREADIRAYDPERDANIAEQPRRAKATTPQNSSRSRYAIDPETITAGRLPQRAPVVTSAANPHYQKHFDRLFDLAKAGDWDGVRNYEVKGSNSYSKMVARYRQDLLAVHAASEAAP*
JGI12672J13324_103370	JGI12672J13324_1033701	F057773	QVAEKPREILFRPGIAYDAFDPARGDVKSSDKGLSAVALIFELASLDLARHQRQPRRHALQRLNAGHFVDGDRAMSVIRTGCGLVNRTDIRALAIKGGIRFRGQPVTDAMGLEVCLFFKKRPTERCEIFGTRPRRMASSAISRWLHWLIGRSLSDGFSHVIATTAQICSGVYVAGAPDRGASARRSQTVHLSSASRH
JGI12672J13324_103530	JGI12672J13324_1035301	F015950	ACVYAMVGASTRHVDPGATLRIHSGVGRELDRTENFLRRYVTVMGVDPDLVDAAAKIPSRSFRGLSRGEMERFGIETRGVHETPWFVYNGPAGEFILLKSVTYPTEETGDEYRTRTVGLACSSLHPNIRVTYHSGLTGKQGRTPPRIRAKIGDSLIDLTTLQVDSVEKSFTLEPQQLQRAIATGSFEITEIFD
JGI12672J13324_103753	JGI12672J13324_1037531	F022726	DGYWVEPDDDVYDRIDPYWIDFELILVPQVRKWKWRMWVDHGVEFFIHPAMRARATIGFPEFFRQDRDGMPRGVIQVVRSASS*
JGI12672J13324_103839	JGI12672J13324_1038391	F000083	MSTLDEITQEKQRVSEALARIDAQRQKLAGQLGELEATERVLARYSTGTKRTVSAKSPPSPTKAVAPAQRQRGRRPATTAKPGDGRRTSATLSDQVLALATGRTQHEIASACKGARPNHVGAAISRHKRAGRIEERDGKLYASQATEAAQH
JGI12672J13324_104190	JGI12672J13324_1041901	F053913	LALMAAIGLSPAMGQGPKPSGGRTWPGIAQPVEHDADPAHSANPSFQGASPQGTSQRGFVVMPFDPEAAKIKPHYEWQYHYTGRHAHWEGHWTLVTAPIQSAKPPTTPAP*
JGI12672J13324_104252	JGI12672J13324_1042521	F000915	MIDEHNLVLFSRSEGDAYQSSKAAELSLNATILRAEISRSYEEFLDIFETFYADDVEVSREDLQEMIRGKARVRAFLLNVLVPLHVMAEVAGLSISVQQTAVPGDTANETHSAWRIDFTGVGGRRCTLKWYATRRWNASRVEYEHHYDLQQIGGPLTMDDLNLGSGGSDVSI*
JGI12672J13324_104437	JGI12672J13324_1044371	F086733	RSLIRAVYRFRDATLVAEKKDDFGNALQNLYRELERAEDRVGPGA*
JGI12672J13324_104834	JGI12672J13324_1048341	F008403	MLEINDLRRRIAKLKFERASVTIIEELEAQLRILRSIYDSATALFAAGETDGRLQASFRDRQLGNWTFENVYFYVYEQAVALEPEGHDLATLIWRYDYAAPLLGSVAAK*