Metagenome Family F086733

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F086733
Family Type	Metagenome
Number of Sequences	110
Average Sequence Length	46 residues
Representative Sequence	MRSLIRAVYRFRDATLVAEKKDDFGGALQNLYRELERAENLVGPS
Number of Associated Samples	61
Number of Associated Scaffolds	109

Quality Assessment
Transcriptomic Evidence	No
Most common taxonomic group	Unclassified
% of genes with valid RBS motifs	55.14 %
% of genes near scaffold ends (potentially truncated)	39.09 %
% of genes from short scaffolds (< 2000 bps)	72.73 %
Associated GOLD sequencing projects	49
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.46

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Unclassified (50.000 % of family members)
NCBI Taxonomy ID	N/A
Taxonomy	N/A

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil (22.727 % of family members)
Environment Ontology (ENVO)	Unclassified (43.636 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (60.000 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 50.68% β-sheet: 0.00% Coil/Unstructured: 49.32%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.46
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.46
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 109 Family Scaffolds
PF00069	Pkinase	8.26
PF00589	Phage_integrase	3.67
PF00106	adh_short	1.83
PF03797	Autotransporter	1.83
PF05977	MFS_3	1.83
PF02586	SRAP	1.83
PF08241	Methyltransf_11	1.83
PF03413	PepSY	1.83
PF13371	TPR_9	0.92
PF00924	MS_channel	0.92
PF14534	DUF4440	0.92
PF12681	Glyoxalase_2	0.92
PF04679	DNA_ligase_A_C	0.92
PF13480	Acetyltransf_6	0.92
PF13676	TIR_2	0.92
PF11185	DUF2971	0.92
PF04185	Phosphoesterase	0.92
PF07040	DUF1326	0.92
PF07366	SnoaL	0.92
PF04079	SMC_ScpB	0.92
PF02782	FGGY_C	0.92
PF02129	Peptidase_S15	0.92
PF00392	GntR	0.92
PF00535	Glycos_transf_2	0.92
PF00805	Pentapeptide	0.92
PF13578	Methyltransf_24	0.92
PF08281	Sigma70_r4_2	0.92
PF02229	PC4	0.92
PF13392	HNH_3	0.92
PF00201	UDPGT	0.92
PF08401	ArdcN	0.92

COG ID	Name	Functional Category	% Frequency in 109 Family Scaffolds
COG0515	Serine/threonine protein kinase	Signal transduction mechanisms [T]	33.03
COG1819	UDP:flavonoid glycosyltransferase YjiC, YdhE family	Carbohydrate transport and metabolism [G]	1.83
COG2135	ssDNA abasic site-binding protein YedK/HMCES, SRAP family	Replication, recombination and repair [L]	1.83
COG2814	Predicted arabinose efflux permease AraJ, MFS family	Carbohydrate transport and metabolism [G]	1.83
COG0668	Small-conductance mechanosensitive channel	Cell wall/membrane/envelope biogenesis [M]	0.92
COG1357	Uncharacterized conserved protein YjbI, contains pentapeptide repeats	Function unknown [S]	0.92
COG1386	Chromosome segregation and condensation protein ScpB	Transcription [K]	0.92
COG1793	ATP-dependent DNA ligase	Replication, recombination and repair [L]	0.92
COG3264	Small-conductance mechanosensitive channel MscK	Cell wall/membrane/envelope biogenesis [M]	0.92
COG3511	Phospholipase C	Cell wall/membrane/envelope biogenesis [M]	0.92
COG4227	Antirestriction protein ArdC	Replication, recombination and repair [L]	0.92
COG5588	Uncharacterized conserved protein, DUF1326 domain	Function unknown [S]	0.92

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	50.00 %
Unclassified	root	N/A	50.00 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	50.00 %
Unclassified	root	N/A	50.00 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	50.00 %
Unclassified	root	N/A	50.00 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	50.00 %
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	14.55 %
PVC group	clade	All Organisms → cellular organisms → Bacteria → PVC group	6.36 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	3.64 %
FCB group	clade	All Organisms → cellular organisms → Bacteria → FCB group	0.91 %
Nitrospirae	phylum	All Organisms → cellular organisms → Bacteria → Nitrospirae	0.91 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	50.00 %
unclassified Acidobacteria	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria	11.82 %
Verrucomicrobia	phylum	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	6.36 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	2.73 %
Acidobacteriia	class	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia	1.82 %
unclassified Nitrospirae	no rank	All Organisms → cellular organisms → Bacteria → Nitrospirae → unclassified Nitrospirae	0.91 %
Bacteroidetes/Chlorobi group	clade	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group	0.91 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	50.00 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	11.82 %
unclassified Verrucomicrobia	no rank	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia	2.73 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	2.73 %
Acidobacteriales	order	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales	1.82 %
Nitrospirae bacterium	species	All Organisms → cellular organisms → Bacteria → Nitrospirae → unclassified Nitrospirae → Nitrospirae bacterium	0.91 %
Verrucomicrobiae	class	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Verrucomicrobiae	0.91 %
Spartobacteria	class	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Spartobacteria	0.91 %
Bacteroidetes	phylum	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes	0.91 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	50.00 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	11.82 %
Verrucomicrobia bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	2.73 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	2.73 %
Acidobacteriaceae	family	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	1.82 %
Chthoniobacterales	order	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Spartobacteria → Chthoniobacterales	0.91 %
Flavobacteriia	class	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia	0.91 %
Verrucomicrobiales	order	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Verrucomicrobiae → Verrucomicrobiales	0.91 %
Nitrospirae bacterium	species	All Organisms → cellular organisms → Bacteria → Nitrospirae → unclassified Nitrospirae → Nitrospirae bacterium	0.91 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	50.00 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	11.82 %
Verrucomicrobia bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	2.73 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	2.73 %
Chthoniobacteraceae	family	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Spartobacteria → Chthoniobacterales → Chthoniobacteraceae	0.91 %
Edaphobacter	genus	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Edaphobacter	0.91 %
Flavobacteriales	order	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales	0.91 %
Verrucomicrobiales	order	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Verrucomicrobiae → Verrucomicrobiales	0.91 %
Nitrospirae bacterium	species	All Organisms → cellular organisms → Bacteria → Nitrospirae → unclassified Nitrospirae → Nitrospirae bacterium	0.91 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	50.00 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	11.82 %
Verrucomicrobia bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	2.73 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	2.73 %
Edaphobacter lichenicola	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Edaphobacter → Edaphobacter lichenicola	0.91 %
Chthoniobacter	genus	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Spartobacteria → Chthoniobacterales → Chthoniobacteraceae → Chthoniobacter	0.91 %
Flavobacteriaceae	family	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae	0.91 %
Verrucomicrobiales	order	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Verrucomicrobiae → Verrucomicrobiales	0.91 %
Nitrospirae bacterium	species	All Organisms → cellular organisms → Bacteria → Nitrospirae → unclassified Nitrospirae → Nitrospirae bacterium	0.91 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	50.00 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	11.82 %
Verrucomicrobia bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	2.73 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	2.73 %
Chthoniobacter flavus	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Spartobacteria → Chthoniobacterales → Chthoniobacteraceae → Chthoniobacter → Chthoniobacter flavus	0.91 %
Tenacibaculum	genus	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → Tenacibaculum	0.91 %
Edaphobacter lichenicola	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Edaphobacter → Edaphobacter lichenicola	0.91 %
Verrucomicrobiales	order	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Verrucomicrobiae → Verrucomicrobiales	0.91 %
Nitrospirae bacterium	species	All Organisms → cellular organisms → Bacteria → Nitrospirae → unclassified Nitrospirae → Nitrospirae bacterium	0.91 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	50.00 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	11.82 %
Verrucomicrobia bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	2.73 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	2.73 %
unclassified Tenacibaculum	no rank	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → Tenacibaculum → unclassified Tenacibaculum	0.91 %
Chthoniobacter flavus	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Spartobacteria → Chthoniobacterales → Chthoniobacteraceae → Chthoniobacter → Chthoniobacter flavus	0.91 %
Edaphobacter lichenicola	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Edaphobacter → Edaphobacter lichenicola	0.91 %
Verrucomicrobiales	order	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Verrucomicrobiae → Verrucomicrobiales	0.91 %
Nitrospirae bacterium	species	All Organisms → cellular organisms → Bacteria → Nitrospirae → unclassified Nitrospirae → Nitrospirae bacterium	0.91 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	50.00 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	11.82 %
Verrucomicrobia bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	2.73 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	2.73 %
Tenacibaculum sp.	species	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → Tenacibaculum → unclassified Tenacibaculum → Tenacibaculum sp.	0.91 %
Chthoniobacter flavus	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Spartobacteria → Chthoniobacterales → Chthoniobacteraceae → Chthoniobacter → Chthoniobacter flavus	0.91 %
Edaphobacter lichenicola	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Edaphobacter → Edaphobacter lichenicola	0.91 %
Verrucomicrobiales	order	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Verrucomicrobiae → Verrucomicrobiales	0.91 %
Nitrospirae bacterium	species	All Organisms → cellular organisms → Bacteria → Nitrospirae → unclassified Nitrospirae → Nitrospirae bacterium	0.91 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
2088090014\|GPIPI_17234820	All Organisms → cellular organisms → Bacteria	4377	Open in IMG/M
2228664022\|INPgaii200_c0914159	Not Available	759	Open in IMG/M
2228664022\|INPgaii200_c1177013	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	954	Open in IMG/M
3300000364\|INPhiseqgaiiFebDRAFT_100273939	Not Available	575	Open in IMG/M
3300000364\|INPhiseqgaiiFebDRAFT_101248819	Not Available	648	Open in IMG/M
3300000364\|INPhiseqgaiiFebDRAFT_101592834	All Organisms → cellular organisms → Bacteria → Nitrospirae → unclassified Nitrospirae → Nitrospirae bacterium	1412	Open in IMG/M
3300000364\|INPhiseqgaiiFebDRAFT_101639831	Not Available	501	Open in IMG/M
3300000364\|INPhiseqgaiiFebDRAFT_104801271	Not Available	501	Open in IMG/M
3300000789\|JGI1027J11758_12359169	Not Available	853	Open in IMG/M
3300000789\|JGI1027J11758_12948312	All Organisms → cellular organisms → Bacteria → Proteobacteria	1517	Open in IMG/M
3300000789\|JGI1027J11758_13075031	Not Available	1372	Open in IMG/M
3300000955\|JGI1027J12803_100062849	Not Available	1634	Open in IMG/M
3300000955\|JGI1027J12803_100997285	Not Available	508	Open in IMG/M
3300000955\|JGI1027J12803_101304272	Not Available	585	Open in IMG/M
3300000955\|JGI1027J12803_101384518	Not Available	588	Open in IMG/M
3300000955\|JGI1027J12803_101959584	Not Available	736	Open in IMG/M
3300000955\|JGI1027J12803_101985014	Not Available	621	Open in IMG/M
3300000955\|JGI1027J12803_102173296	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	716	Open in IMG/M
3300000955\|JGI1027J12803_102741368	Not Available	522	Open in IMG/M
3300000955\|JGI1027J12803_103709065	Not Available	525	Open in IMG/M
3300000955\|JGI1027J12803_103763699	Not Available	1040	Open in IMG/M
3300000955\|JGI1027J12803_103828369	Not Available	629	Open in IMG/M
3300000955\|JGI1027J12803_108653348	Not Available	2423	Open in IMG/M
3300001150\|JGI12672J13324_104437	Not Available	533	Open in IMG/M
3300001545\|JGI12630J15595_10018143	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1496	Open in IMG/M
3300001545\|JGI12630J15595_10069553	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	693	Open in IMG/M
3300001661\|JGI12053J15887_10064547	All Organisms → cellular organisms → Bacteria	2030	Open in IMG/M
3300002245\|JGIcombinedJ26739_100000610	All Organisms → cellular organisms → Bacteria	20466	Open in IMG/M
3300002245\|JGIcombinedJ26739_100151336	All Organisms → cellular organisms → Bacteria	2192	Open in IMG/M
3300002245\|JGIcombinedJ26739_100381294	All Organisms → cellular organisms → Bacteria	1290	Open in IMG/M
3300002245\|JGIcombinedJ26739_100517268	Not Available	1071	Open in IMG/M
3300002245\|JGIcombinedJ26739_100543558	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	1039	Open in IMG/M
3300002245\|JGIcombinedJ26739_101068359	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	693	Open in IMG/M
3300002245\|JGIcombinedJ26739_101582832	Not Available	552	Open in IMG/M
3300002906\|JGI25614J43888_10000328	All Organisms → cellular organisms → Bacteria	13047	Open in IMG/M
3300002906\|JGI25614J43888_10054949	Not Available	1183	Open in IMG/M
3300002917\|JGI25616J43925_10043246	All Organisms → cellular organisms → Bacteria	1968	Open in IMG/M
3300002917\|JGI25616J43925_10138307	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	980	Open in IMG/M
3300002917\|JGI25616J43925_10154533	Not Available	915	Open in IMG/M
3300005445\|Ga0070708_100137361	All Organisms → cellular organisms → Bacteria	2265	Open in IMG/M
3300005445\|Ga0070708_100137361	All Organisms → cellular organisms → Bacteria	2265	Open in IMG/M
3300005467\|Ga0070706_101224956	Not Available	689	Open in IMG/M
3300005467\|Ga0070706_101877505	Not Available	544	Open in IMG/M
3300005468\|Ga0070707_100281303	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1617	Open in IMG/M
3300005471\|Ga0070698_100000876	All Organisms → cellular organisms → Bacteria	33074	Open in IMG/M
3300005518\|Ga0070699_100035108	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	4333	Open in IMG/M
3300005518\|Ga0070699_100063531	All Organisms → cellular organisms → Bacteria	3201	Open in IMG/M
3300005518\|Ga0070699_102095016	Not Available	517	Open in IMG/M
3300005536\|Ga0070697_100318254	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1339	Open in IMG/M
3300006028\|Ga0070717_10028110	All Organisms → cellular organisms → Bacteria	4498	Open in IMG/M
3300006854\|Ga0075425_101500140	Not Available	761	Open in IMG/M
3300010048\|Ga0126373_13046281	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	522	Open in IMG/M
3300012200\|Ga0137382_10763864	Not Available	694	Open in IMG/M
3300012202\|Ga0137363_11248409	Not Available	630	Open in IMG/M
3300012202\|Ga0137363_11489081	Not Available	568	Open in IMG/M
3300012203\|Ga0137399_10049653	All Organisms → cellular organisms → Bacteria	3037	Open in IMG/M
3300012205\|Ga0137362_10372309	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1237	Open in IMG/M
3300012205\|Ga0137362_11061817	Not Available	689	Open in IMG/M
3300012361\|Ga0137360_11850481	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	509	Open in IMG/M
3300012582\|Ga0137358_10021204	All Organisms → cellular organisms → Bacteria	4187	Open in IMG/M
3300012582\|Ga0137358_11055952	Not Available	521	Open in IMG/M
3300012683\|Ga0137398_10091739	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Spartobacteria → Chthoniobacterales → Chthoniobacteraceae → Chthoniobacter → Chthoniobacter flavus	1895	Open in IMG/M
3300012918\|Ga0137396_10079339	Not Available	2308	Open in IMG/M
3300012918\|Ga0137396_10187829	Not Available	1516	Open in IMG/M
3300012918\|Ga0137396_11240046	Not Available	522	Open in IMG/M
3300012923\|Ga0137359_10175578	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1913	Open in IMG/M
3300012923\|Ga0137359_10672191	Not Available	904	Open in IMG/M
3300012923\|Ga0137359_11128900	Not Available	670	Open in IMG/M
3300012925\|Ga0137419_10694694	Not Available	825	Open in IMG/M
3300012927\|Ga0137416_11943009	Not Available	539	Open in IMG/M
3300016294\|Ga0182041_11680529	Not Available	587	Open in IMG/M
3300016357\|Ga0182032_11456484	Not Available	594	Open in IMG/M
3300020199\|Ga0179592_10075684	Not Available	1543	Open in IMG/M
3300020199\|Ga0179592_10346955	Not Available	654	Open in IMG/M
3300023046\|Ga0233356_1006184	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1222	Open in IMG/M
3300024288\|Ga0179589_10334853	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	686	Open in IMG/M
3300024347\|Ga0179591_1042600	All Organisms → cellular organisms → Bacteria	2772	Open in IMG/M
3300024347\|Ga0179591_1186215	All Organisms → cellular organisms → Bacteria	2736	Open in IMG/M
3300025910\|Ga0207684_10068155	All Organisms → cellular organisms → Bacteria	3024	Open in IMG/M
3300025922\|Ga0207646_10430687	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	1190	Open in IMG/M
3300026304\|Ga0209240_1066040	Not Available	1350	Open in IMG/M
3300026319\|Ga0209647_1001073	All Organisms → cellular organisms → Bacteria	24147	Open in IMG/M
3300026481\|Ga0257155_1024104	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	885	Open in IMG/M
3300026498\|Ga0257156_1007672	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	2023	Open in IMG/M
3300026498\|Ga0257156_1119609	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	548	Open in IMG/M
3300026551\|Ga0209648_10056835	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Edaphobacter → Edaphobacter lichenicola	3330	Open in IMG/M
3300026551\|Ga0209648_10066778	All Organisms → cellular organisms → Bacteria	3037	Open in IMG/M
3300026557\|Ga0179587_10878826	Not Available	591	Open in IMG/M
3300027383\|Ga0209213_1101842	Not Available	531	Open in IMG/M
3300027537\|Ga0209419_1009823	All Organisms → cellular organisms → Bacteria	1609	Open in IMG/M
3300027583\|Ga0209527_1003469	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	3183	Open in IMG/M
3300027603\|Ga0209331_1009644	All Organisms → cellular organisms → Bacteria → Acidobacteria	2541	Open in IMG/M
3300027603\|Ga0209331_1045654	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Verrucomicrobiae → Verrucomicrobiales	1111	Open in IMG/M
3300027651\|Ga0209217_1015088	All Organisms → cellular organisms → Bacteria	2511	Open in IMG/M
3300027684\|Ga0209626_1056142	All Organisms → cellular organisms → Bacteria	989	Open in IMG/M
3300028047\|Ga0209526_10001888	All Organisms → cellular organisms → Bacteria	14048	Open in IMG/M
3300028047\|Ga0209526_10013137	Not Available	5719	Open in IMG/M
3300028047\|Ga0209526_10240040	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1243	Open in IMG/M
3300028047\|Ga0209526_10306211	All Organisms → cellular organisms → Bacteria	1074	Open in IMG/M
3300028047\|Ga0209526_10478114	Not Available	815	Open in IMG/M
3300028536\|Ga0137415_11318244	All Organisms → cellular organisms → Bacteria	540	Open in IMG/M
3300031753\|Ga0307477_10513180	Not Available	814	Open in IMG/M
3300031754\|Ga0307475_11023235	Not Available	649	Open in IMG/M
3300031912\|Ga0306921_11513928	All Organisms → cellular organisms → Bacteria	733	Open in IMG/M
3300031945\|Ga0310913_10770795	Not Available	679	Open in IMG/M
3300031962\|Ga0307479_10604063	Not Available	1079	Open in IMG/M
3300031962\|Ga0307479_10866144	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → Tenacibaculum → unclassified Tenacibaculum → Tenacibaculum sp.	877	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	99.09%
Host-Associated	Host-Associated	0.91%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	99.09%
Plants	Host-Associated → Plants	0.91%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	99.09%
Rhizosphere	Host-Associated → Plants → Rhizosphere	0.91%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	65.45%
Loam	Environmental → Terrestrial → Soil → Loam	33.64%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	0.91%

Habitat	Taxonomy	Distribution
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	29.09%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	23.64%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	21.82%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	12.73%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	11.82%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	0.91%

Habitat	Taxonomy	Distribution
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	22.73%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil	21.82%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	20.91%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	11.82%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil	8.18%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	4.55%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	4.55%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	3.64%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	0.91%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	0.91%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
2088090014	Soil microbial communities from Great Prairies - Iowa, Native Prairie soil	Environmental	Open in IMG/M
2228664022	Soil microbial communities from Great Prairies - Iowa, Native Prairie soil	Environmental	Open in IMG/M
3300000364	Soil microbial communities from Great Prairies - Iowa, Native Prairie soil	Environmental	Open in IMG/M
3300000789	Soil microbial communities from Great Prairies - Iowa, Native Prairie soil	Environmental	Open in IMG/M
3300000955	Soil microbial communities from Great Prairies - Iowa, Native Prairie soil	Environmental	Open in IMG/M
3300001150	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM1H0_M1	Environmental	Open in IMG/M
3300001545	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM2H0_M1	Environmental	Open in IMG/M
3300001661	Mediterranean Blodgett CA OM1_O3 (Mediterranean Blodgett coassembly)	Environmental	Open in IMG/M
3300002245	Jack Pine, Ontario site 1_JW_OM2H0_M3 (Jack Pine, Ontario combined, ASSEMBLY_DATE=20131027)	Environmental	Open in IMG/M
3300002906	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 9_17_2013_60cm	Environmental	Open in IMG/M
3300002917	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 9_17_2013_100cm	Environmental	Open in IMG/M
3300005445	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-3 metaG	Environmental	Open in IMG/M
3300005467	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG	Environmental	Open in IMG/M
3300005468	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG	Environmental	Open in IMG/M
3300005471	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-2 metaG	Environmental	Open in IMG/M
3300005518	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-3 metaG	Environmental	Open in IMG/M
3300005536	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-1 metaG	Environmental	Open in IMG/M
3300006028	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-3 metaG	Environmental	Open in IMG/M
3300006854	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD4	Host-Associated	Open in IMG/M
3300010048	Tropical forest soil microbial communities from Panama - MetaG Plot_11	Environmental	Open in IMG/M
3300012200	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_20_16 metaG	Environmental	Open in IMG/M
3300012202	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_115_16 metaG	Environmental	Open in IMG/M
3300012203	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czorhiz3.16 metaG	Environmental	Open in IMG/M
3300012205	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_100_16 metaG	Environmental	Open in IMG/M
3300012361	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_60_16 metaG	Environmental	Open in IMG/M
3300012582	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_20_16 metaG	Environmental	Open in IMG/M
3300012683	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czorhiz2.16 metaG	Environmental	Open in IMG/M
3300012918	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czcobulk3.16 metaG	Environmental	Open in IMG/M
3300012923	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_40_16 metaG	Environmental	Open in IMG/M
3300012925	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_2_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012927	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_1_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300016294	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.178	Environmental	Open in IMG/M
3300016341	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.170	Environmental	Open in IMG/M
3300016357	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.000	Environmental	Open in IMG/M
3300016387	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.176	Environmental	Open in IMG/M
3300020199	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug2_1_08_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300023046	Soil microbial communities from Shasta-Trinity National Forest, California, United States - GEON-SFM-MS	Environmental	Open in IMG/M
3300024288	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_1_08_16fungal	Environmental	Open in IMG/M
3300024347	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_1_08_16fungal (PacBio error correction)	Environmental	Open in IMG/M
3300025910	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG (SPAdes)	Environmental	Open in IMG/M
3300025922	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG (SPAdes)	Environmental	Open in IMG/M
3300026304	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 9_17_2013_80cm (SPAdes)	Environmental	Open in IMG/M
3300026319	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 9_17_2013_60cm (SPAdes)	Environmental	Open in IMG/M
3300026481	Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - NI-19-A	Environmental	Open in IMG/M
3300026498	Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - NI-49-A	Environmental	Open in IMG/M
3300026551	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 9_17_2013_115cm (SPAdes)	Environmental	Open in IMG/M
3300026557	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug2_1_08_16fungal	Environmental	Open in IMG/M
3300027061	Forest soil microbial communities from Davy Crockett National Forest, Groveton, Texas, USA - Texas A ecozone_OM1H0_M3 (SPAdes)	Environmental	Open in IMG/M
3300027383	Forest soil microbial communities from El Dorado National Forest, California, USA - Mediterranean Blodgett CA OM1_M2 (SPAdes)	Environmental	Open in IMG/M
3300027537	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM1H0_M3 (SPAdes)	Environmental	Open in IMG/M
3300027583	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM2H0_M2 (SPAdes)	Environmental	Open in IMG/M
3300027603	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM3H0_M3 (SPAdes)	Environmental	Open in IMG/M
3300027651	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM3H0_M2 (SPAdes)	Environmental	Open in IMG/M
3300027684	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM1H0_M2 (SPAdes)	Environmental	Open in IMG/M
3300028047	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM2H0_M1 (SPAdes)	Environmental	Open in IMG/M
3300028536	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_1_16fungal (Hybrid Assembly)	Environmental	Open in IMG/M
3300031753	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM2C_515	Environmental	Open in IMG/M
3300031754	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM1C_515	Environmental	Open in IMG/M
3300031912	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.080 (v2)	Environmental	Open in IMG/M
3300031945	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.OX082	Environmental	Open in IMG/M
3300031962	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM4C_515	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
GPIPI_02535910	2088090014	Soil	VIRSLIRVVYRFRDATLVDEKKDDFGSTLQKLCRDLEGAKELVGPGS
INPgaii200_09141591	2228664022	Soil	VRQSSAYRFRDAALIAEKKDDFGSAPQNLYRELERAENLVGPS
INPgaii200_11770131	2228664022	Soil	GRDAVMRNLIGAVYRFRDATLVAEKKDDFGNALQNLYRELERAENVVGPS
INPhiseqgaiiFebDRAFT_1002739392	3300000364	Soil	IRAVYRFRDAALVAEKKDDFGSALQNLCRELEQAEDLVGPP*
INPhiseqgaiiFebDRAFT_1012488192	3300000364	Soil	MAIRNLIRAAYRFRDATLVAEKKHDCGSALQNLYRELERAKT*
INPhiseqgaiiFebDRAFT_1015928342	3300000364	Soil	VIRSLIRVVYRFRDATLVDEKKDDFGSTLQKLCRDLEGAKELVGPGS*
INPhiseqgaiiFebDRAFT_1016398313	3300000364	Soil	RFRDAALVDEKKDDSGSALQNLYRELERAENLLGPS*
INPhiseqgaiiFebDRAFT_1048012711	3300000364	Soil	MSNLIRAAYRFRDATLVAEKKEDFANALQNLYHALKHAENMVGPS*
JGI1027J11758_123591693	3300000789	Soil	YRFRDATLVAENNDDFGNALQNLYRELERAEDLLGSCSH*
JGI1027J11758_129483121	3300000789	Soil	MVMRSLVRAVYRFRDATLVADKKDNFGNALQNLYRELEPAEDVVGPAE*
JGI1027J11758_130750312	3300000789	Soil	GRDMVMRSLVRAVYRFRDATLVAEKKDDFGNALQNLYRELERAENLVGPVG*
JGI1027J12803_1000628492	3300000955	Soil	MRSLIRAVYRFRDAALVAEKKDDFGSALQNLCRELEQAEDLVGPP*
JGI1027J12803_1009972851	3300000955	Soil	MRSLIRAVYRFRDAALVDEKKDDFGNALQNLYRELVRAENLVGPS*
JGI1027J12803_1013042722	3300000955	Soil	LRRDVVRSLVRAAYRFRDAALIAEKKNDFGNALQNLYRELERAENLVGPS*
JGI1027J12803_1013845181	3300000955	Soil	AVMRSLIRAVYRFRDATLVDEKKDDFGSALQNLYRELERAENLVGPS*
JGI1027J12803_1019595841	3300000955	Soil	MMRSLIRAVYRFRDATLVAEKKDDFGNALQNPYRELERAEDLVGPPG*
JGI1027J12803_1019850142	3300000955	Soil	MLSLIRAVYRFRDATLVDEKKGDFGNALQNLYRELERAEDLVGPLSRQG*
JGI1027J12803_1021732962	3300000955	Soil	MRSLIQAVYRFRDAALVNEKKGDFGSALQNLYRELER
JGI1027J12803_1027413682	3300000955	Soil	MRNLIQAVYRFRDATLVDAKKDDFGSALQNLYRELERAESLVG
JGI1027J12803_1037090651	3300000955	Soil	MLSLIRAVYRFRDATLVEEKKADFGSALQNLYRELERAEELVGPAS*
JGI1027J12803_1037636992	3300000955	Soil	RDAVMRSLVHAIYRIRDATLIAEKKEDFGNALQNLYRQLERAENLVGPVG*
JGI1027J12803_1038283693	3300000955	Soil	MRSLIRAVYRFRDATLVVEKKEDFGSALQNLYRELERAEDLVGPG*
JGI1027J12803_1086533487	3300000955	Soil	LIGAVYRFRDATLVAEKKDDFGNALQNLYRELERAENVVGPS*
JGI12672J13324_1044371	3300001150	Forest Soil	RSLIRAVYRFRDATLVAEKKDDFGNALQNLYRELERAEDRVGPGA*
JGI12630J15595_100181431	3300001545	Forest Soil	MRSLIQAVYRFRDAALVDEKRGDFGGALQNLYRELERAEDLVGPSE*
JGI12630J15595_100695532	3300001545	Forest Soil	AVMRSLIRAVYRFRDATLVAEKKDDFGGALQNLYRELERAENLVGPS*
JGI12053J15887_100645472	3300001661	Forest Soil	MRSLVRAVYRFRDATLVAEKKDDFGSALQNLYWELERAEDLVGPG*
JGIcombinedJ26739_10000061036	3300002245	Forest Soil	RDIVMRSLIQAVYRFRDAALVDEKRGDFGGALQNLYRELERAEDLVGPSE*
JGIcombinedJ26739_1001513362	3300002245	Forest Soil	MRSLIQAVYRFRDATLVAEKKDDFGNALQNLYRELERAEDLVGPGA*
JGIcombinedJ26739_1003812942	3300002245	Forest Soil	MRSLIRAVYRFRDATLVAEKKDDFGGALQNLYRELERAENLVGPS*
JGIcombinedJ26739_1005172681	3300002245	Forest Soil	MRSLIRAVYRFRDAALVAEKKDDFGNALQNLYRELERAEDLVGPG*
JGIcombinedJ26739_1005435581	3300002245	Forest Soil	AVYRFRDATLVAEKKDDFGGALQNLYRELERAENLVGPS*
JGIcombinedJ26739_1010683591	3300002245	Forest Soil	MRSLIQAVYRFRDAALVDEKRGDFGGALQNLYRELERAEDLVGPP*
JGIcombinedJ26739_1015828321	3300002245	Forest Soil	MRSLIQAVYRFRDAALVDEKRGDFGSALQNLYRELERAENLVGPS*
JGI25614J43888_1000032817	3300002906	Grasslands Soil	MRSLIGAVYRFRDATLVEEKKGDFGSALQNLYRELERAEELVGPS*
JGI25614J43888_100549493	3300002906	Grasslands Soil	MRSLIRAVHRFRDAGLVAQKKDDFGSALQNLYRELERAENLVGPP*
JGI25616J43925_100432463	3300002917	Grasslands Soil	MRSLVRAVYRFRDATLVAEKKDDFGSALQNLYRELERAENLVGPP*
JGI25616J43925_101383073	3300002917	Grasslands Soil	VMRSLIRAVHRFRDAGLVAQKKDDFGSALQNLYRELERAENLVGPP*
JGI25616J43925_101545333	3300002917	Grasslands Soil	SRDMVMRSLVRAVYRFRDATLVTEKKDDFGNALQNLYRELERGEDLIGGSGSR*
Ga0070708_1001373611	3300005445	Corn, Switchgrass And Miscanthus Rhizosphere	MVMRSLVRAVYRFRDATLVAEKKDDFGNALQHLYRELERADDLVGPPG*
Ga0070708_1001373614	3300005445	Corn, Switchgrass And Miscanthus Rhizosphere	MVIRSLIRAVCWFRDPELVAEKKDDFDSALQNLYRELKRAEELVGPG*
Ga0070706_1012249562	3300005467	Corn, Switchgrass And Miscanthus Rhizosphere	IEGRETVFRSLIRAVYRFRDATLVAEKKDDFGNALQNLYRELERAEEVVGPAA*
Ga0070706_1018775052	3300005467	Corn, Switchgrass And Miscanthus Rhizosphere	MLSLLRVVYRLRDAALVAEKKDRFGSALQNLYGELEQAENLVRPS*
Ga0070707_1002813031	3300005468	Corn, Switchgrass And Miscanthus Rhizosphere	TIAGRDAVMRNLIGAVYRFRDATLVAEKKDDFGNALQSLYRELERAENVVGPS*
Ga0070698_10000087629	3300005471	Corn, Switchgrass And Miscanthus Rhizosphere	MRGLIRAVYRFRDAALVAEKKDDFGNALQNLYRELEPAEDLVGSG*
Ga0070699_1000351082	3300005518	Corn, Switchgrass And Miscanthus Rhizosphere	MRSLIRAVYRFRDAALVAEKKDDFGNALQNLYRELERAEDLVRRSG*
Ga0070699_1000635311	3300005518	Corn, Switchgrass And Miscanthus Rhizosphere	LIRAVYRFRDATLVAEKKDDFGSALQNLYRELERAENLVGPS*
Ga0070699_1020950162	3300005518	Corn, Switchgrass And Miscanthus Rhizosphere	LIRAVYRFRDATLVAEKKDDFGNALQNLYRELERPEDLVGPAS*
Ga0070697_1003182541	3300005536	Corn, Switchgrass And Miscanthus Rhizosphere	VMRSLIRAVYRFRDATLVAEKKDDFGSALQNLYRELERAENLVGPT*
Ga0070717_100281104	3300006028	Corn, Switchgrass And Miscanthus Rhizosphere	MRSLIRAVYRFRNATLVAEKKDDFGGALQNLYRELERAENVVGPS*
Ga0075425_1015001402	3300006854	Populus Rhizosphere	MVMRSLVRAVYRFRDATLVAEKKHDFGNALQNLYRELERAEDLVGPG*
Ga0126373_130462812	3300010048	Tropical Forest Soil	MRAVYRFRDAILVGDKKGDFTNALQNLYRELSRAEELVGPPGPD*
Ga0137382_107638641	3300012200	Vadose Zone Soil	MVMRSLVRAVYRFRDATSVAEKKEDFGNALQNLYRELERAENLVGP
Ga0137363_112484091	3300012202	Vadose Zone Soil	MQGRDMVMRSLIQAVYRFRDATLVDEKKGDFGSALQNLDREWVRAGDLFRTS*
Ga0137363_114890812	3300012202	Vadose Zone Soil	MRSLVHAMYRIRDATLIAEKKEDFGNALQNLYRQLERPENLVGPVG*
Ga0137399_100496535	3300012203	Vadose Zone Soil	MRSLIRAVYRFRDATLVAEKKDDFGGALQNLYRELERAENLVGH*
Ga0137362_103723091	3300012205	Vadose Zone Soil	VVMRSLIGAVYRFRDATLVEEKKGDFGSALQNLYRELERAEELVGPS*
Ga0137362_110618172	3300012205	Vadose Zone Soil	MQGRDMVMRSLIQAVYRFRDATLVDEKKGDFGSALQNLDRELVRAGDLFRPS*
Ga0137360_118504812	3300012361	Vadose Zone Soil	RRTVESRDMVMRSLIRAVYRFRDATLVAEKKDDFATALQNLYRELERAENLIGPS*
Ga0137358_100212046	3300012582	Vadose Zone Soil	MRGSLRAVYRFRDATLVAEKKDDFGNALENLYRELERAENLVGPAN*
Ga0137358_110559522	3300012582	Vadose Zone Soil	MRSLIRAVYRFRDATLVAEKKDDFGNALQNLYRELERAEDSVGPAA*
Ga0137398_100917393	3300012683	Vadose Zone Soil	ETRVMRNLVRAVYRFRDAALVAEKKDDFGSALQNLYRELERAENVVGPS*
Ga0137396_100793391	3300012918	Vadose Zone Soil	MRSLIRAAYRFRDAALIAEKKEDFGSALQNLYRELERAENTVGRS*
Ga0137396_101878292	3300012918	Vadose Zone Soil	MRNLVRAVYRFRDAALVAEKKDDFGSALQNLYRELERAENLVGPP*
Ga0137396_112400461	3300012918	Vadose Zone Soil	MVMRSLIRAVYRFRDATLVAEKKDDFGNALQNLYRELERAEDLVLPAG*
Ga0137359_101755782	3300012923	Vadose Zone Soil	MRSLVQAVYRFRDATLVAEKKDDFGNALQNLYRELERAESVVGPS*
Ga0137359_106721912	3300012923	Vadose Zone Soil	MRSLIRAVYRFRDATLVAEKKDDFGGALQNLYRELERAENLVGQ*
Ga0137359_111289001	3300012923	Vadose Zone Soil	AIRNLIGAVYRFRDATLVDEKKDDFGNALQNLYRELERAENLVGPS*
Ga0137419_106946943	3300012925	Vadose Zone Soil	VMRSLIRAVYRFRDATLVAEKKDDFGSALQNLYRELERAENLVGPSG*
Ga0137416_119430092	3300012927	Vadose Zone Soil	FRDAALITEKRDDFGNPLQNLYRELERAEDLVRPPR*
Ga0182041_116805292	3300016294	Soil	MRAVYRFREAILVDDKKGDFTNALQNLYRELSRAEELVGTPGPD
Ga0182035_105513022	3300016341	Soil	MRDLIRAVYRYRDATLVDGKKDDFGAAQQNLYPELAQAEESVGPVD
Ga0182032_114564841	3300016357	Soil	MRAVYRFREAILVDDKKGDFTNTLQNLYRELSRAEELVGPPGPD
Ga0182040_102337213	3300016387	Soil	MRDLIRAVYRYRDATLVDGKKDDFGAAQQNLYRELAHAEESVGPVD
Ga0179592_100756841	3300020199	Vadose Zone Soil	MRSLIRAVYRFRDATLVAEKKDDFGGALQNLYRELERAENLVGH
Ga0179592_103469552	3300020199	Vadose Zone Soil	MRGSLRAVYRFRDATLVAEKKDDFGNALENLYRELERAENLVGPAN
Ga0233356_10061841	3300023046	Soil	SGRDALMRSLVQAVYRFRDATLVAEKKDDFGNALQNLYRELERAESVVGPS
Ga0179589_103348532	3300024288	Vadose Zone Soil	GLIKAVYRFRDATLVAEKKDDFGTALQNLYRELERAEDLVGPPEK
Ga0179591_10426005	3300024347	Vadose Zone Soil	MVMRSLVRAVYRFRDATLVAEKKDDFGSALQNLYRELERAENLVGPP
Ga0179591_11862154	3300024347	Vadose Zone Soil	VMRSLIRAVYRFRDATLVAERKDDFGSALQNLYPELERAENLVGPP
Ga0207684_100681551	3300025910	Corn, Switchgrass And Miscanthus Rhizosphere	MVMRSLVRAVYRFRDATLVAEKKDDFGNALQHLYRELERADDLVGPPG
Ga0207646_104306871	3300025922	Corn, Switchgrass And Miscanthus Rhizosphere	TVMRSLIRAVYRFRDAALVAEKKDDFGNALQNLYRELERAENVVGPS
Ga0209240_10660402	3300026304	Grasslands Soil	MVMRSLVRAVYRFRDATLVTEKKDDFGNALQNLYRELERGEDLIGGSGSR
Ga0209647_100107319	3300026319	Grasslands Soil	MRSLIGAVYRFRDATLVEEKKGDFGSALQNLYRELERAEELVGPS
Ga0257155_10241042	3300026481	Soil	MRSHVQAVYRFRDATLVAEKKDDFGNALQNLYRELERAESVVGPS
Ga0257156_10076723	3300026498	Soil	RAVYRFRDAALITEKRDDFGNPLQNLYRELERAEDLVRPPR
Ga0257156_11196092	3300026498	Soil	GRDVVMRSLIRAVYRFRDATLVAEKKDDFGSALQNLYRELERAENLIGPS
Ga0209648_100568355	3300026551	Grasslands Soil	MRSLIKAVYRFRDGTLVAEKKDDFGNALQNLYRELERAEDLVGPAS
Ga0209648_100667781	3300026551	Grasslands Soil	MRSLVPAVYRFRDAALVAEKKDDFGNALQNLYRELERAEDLVGRAG
Ga0179587_108788261	3300026557	Vadose Zone Soil	MRSLIRAVYRFRDATLVDEKKDDFGSALQNLYRELERAENLVGPS
Ga0209729_10546411	3300027061	Forest Soil	RTIAGREAVMRSLIQAVYRFRDATLVAEKKDDFGNALQNLYRELERAESVVGPS
Ga0209213_11018422	3300027383	Forest Soil	MQGHDMVMRSLIQAVYRFRDATLVDEKKGDFGSALQNLDRELVRAGTYLD
Ga0209419_10098232	3300027537	Forest Soil	MRSLIQAVYRFRDATLVAEKKDDFGNALQNLYRELERAEDLVGPGA
Ga0209527_10034695	3300027583	Forest Soil	MRSLIQAVYRFRDAALVDEKRGDFGGALQNLYRELERAEDLVGPSE
Ga0209331_10096442	3300027603	Forest Soil	MVMRSLVRAVYRFRDATLIAEKKDDFANALQNLYRELERAEDLVGPG
Ga0209331_10456543	3300027603	Forest Soil	VESRDMVMRSLIRAVYRFRDATLVAEKKDDFGNALQNLYRELERAEDRVGPGA
Ga0209217_10150881	3300027651	Forest Soil	AVYRFRDATLAAEKKDDFGNALQNLYWELERAENLIGPAS
Ga0209626_10561422	3300027684	Forest Soil	MVMRSLVRAVYRFRDATLIAEKKDDFANALQNLYRELERAEDLVGPAS
Ga0209526_1000188822	3300028047	Forest Soil	VMRSLIQAVYRFRDAALVDEKRGDFGGALQNLYRELERAEDLVGPSE
Ga0209526_100131374	3300028047	Forest Soil	MQGRDMVMRSLIQAVYRFRDATLVDEKKGHFGSALQNLDRELVRAGDLFRPS
Ga0209526_102400401	3300028047	Forest Soil	WNRRRAVYRFRDAALIVEKKDDFGGALQNLYRELERAENLVGPS
Ga0209526_103062111	3300028047	Forest Soil	SLIRAVYRFRDATLVAEKKDDFGNALQNLYRELERAEDSVGPAA
Ga0209526_104781143	3300028047	Forest Soil	AVYRFRDATLVAEKKDDFGSALQNLYWELERAEDLVGPG
Ga0137415_113182442	3300028536	Vadose Zone Soil	RAVYRFQDATLIVEKKDDFGGAHQNLYRELERAEDLAGPCGDF
Ga0307477_105131801	3300031753	Hardwood Forest Soil	MRSLIRAVYRFRDATLVAEKKDDFGSALQNLYRELERAENVVG
Ga0307475_110232351	3300031754	Hardwood Forest Soil	MVMRSLFRAVYGFRYATRVAEKKDDFGNALQNLCRALEREEDLLGPG
Ga0306921_115139282	3300031912	Soil	MRAVYRFRDAILVDDKKGDFTNALQNLYRELSRAEELVGTPGPD
Ga0310913_107707951	3300031945	Soil	MRAVYRFREAILVDDKKGDFTNALQNLYRELSRAEELVGPPGPD
Ga0307479_106040631	3300031962	Hardwood Forest Soil	KRTIAGRDAVMRSLIRAVYLFRDATLVAEKKDDFGSALQNLYRELERVEDLVGHS
Ga0307479_108661441	3300031962	Hardwood Forest Soil	RDTVMRSLIRAVYRFRDATLVAEKKDDFGSALQNLYRELERAENVVGPS

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome Family F086733

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences