3300001068: Marine microbial communities from the Deep Atlantic Ocean - MP0372

Overview

Basic Information

• IMG/M Taxon OID: 3300001068
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0053074 | Gp0054765 | Ga0000808
• Sample Name: Marine microbial communities from the Deep Atlantic Ocean - MP0372
• Sequencing Status: Permanent Draft
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 51148844
• Sequencing Scaffolds: 12
• Novel Protein Genes: 12
• Associated Families: 12

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
Not Available	5
All Organisms → cellular organisms → Bacteria	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales → Pelagibacteraceae → Candidatus Pelagibacter	3
All Organisms → cellular organisms → Bacteria → FCB group → Candidatus Marinimicrobia → Candidatus Marinimicrobia bacterium	1
All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Thaumarchaeota incertae sedis → Marine Group I → Marine Group I thaumarchaeote	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Deep Ocean Microbial Communities From The Global Malaspina Expedition
• Type: Environmental
• Taxonomy: Environmental → Aquatic → Marine → Oceanic → Unclassified → Deep Ocean → Deep Ocean Microbial Communities From The Global Malaspina Expedition

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): marine biome → marine water body → sea water
• Earth Microbiome Project Ontology (EMPO): Free-living → Saline → Water (saline)

Location Information

• Location: East of Porto Seguro, South Atlantic Ocean
• Coordinates
  • Lat. (^o): -15.83
  • Long. (^o): -33.41
  • Alt. (m): N/A
  • Depth (m): 4003.17

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003122	Metagenome / Metatranscriptome	506	Y
F004881	Metagenome / Metatranscriptome	420	Y
F006423	Metagenome	373	Y
F010197	Metagenome	307	Y
F012125	Metagenome	283	Y
F033215	Metagenome / Metatranscriptome	178	Y
F035075	Metagenome / Metatranscriptome	173	Y
F045803	Metagenome	152	Y
F052659	Metagenome / Metatranscriptome	142	N
F063069	Metagenome	130	Y
F082562	Metagenome	113	N
F089570	Metagenome	109	N

Associated Scaffolds

Scaffold	Taxonomy	Length
JGI12207J13218_1001034	Not Available	3880
JGI12207J13218_1001406	All Organisms → cellular organisms → Bacteria	3207
JGI12207J13218_1001928	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales → Pelagibacteraceae → Candidatus Pelagibacter	2657
JGI12207J13218_1002720	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales → Pelagibacteraceae → Candidatus Pelagibacter	2097
JGI12207J13218_1009709	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales → Pelagibacteraceae → Candidatus Pelagibacter	873
JGI12207J13218_1012705	All Organisms → cellular organisms → Bacteria → FCB group → Candidatus Marinimicrobia → Candidatus Marinimicrobia bacterium	721
JGI12207J13218_1013371	All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Thaumarchaeota incertae sedis → Marine Group I → Marine Group I thaumarchaeote	696
JGI12207J13218_1014127	Not Available	669
JGI12207J13218_1017823	Not Available	572
JGI12207J13218_1018759	Not Available	554
JGI12207J13218_1019759	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	535
JGI12207J13218_1020409	Not Available	525

Sequences

Scaffold ID	Protein ID	Family	Sequence
JGI12207J13218_1001034	JGI12207J13218_10010345	F012125	MSDTRYSVMHPDGGKYSFFSAGKPKNLPRFYFLVLAGIFLIIFMFLWFD*
JGI12207J13218_1001406	JGI12207J13218_10014063	F052659	MLLSGNPGTETRSAVFIDGRLISSIPELNYQSIDKLQQGGVPDKVSWMKPSLRGRLRLVKLQAQERNLTIEDLNQSIRSKCVILWAEV*
JGI12207J13218_1001928	JGI12207J13218_10019283	F035075	LICFFNNAISNKYVNKIIKLRRLWGIQKNTEAVGKWDPKKEELEKKIRKNS
JGI12207J13218_1002720	JGI12207J13218_10027204	F063069	SXLILELNKPIKKLWPILEKKVKTNPKIIILKLDLTISIIIL*
JGI12207J13218_1009709	JGI12207J13218_10097093	F010197	NLFLLPNTTHELKAFTIKHDLTQHVTNILSRKDGIFFF*
JGI12207J13218_1012705	JGI12207J13218_10127051	F082562	MNKLILSILITLSTVLFAQASDSSNNYFFNIELSLIHPILGGFGGTVGIEKNHFSYGLNSFGTKLNHMTKHYLLENAEELAVYNWGVELYSDYYFKQNHTGLFLGLILSLNGFRFNDIPNPQTILVLYSAPRIGYRLCLPKKLKSFYFQYSLTTHFKVWDDEKKFLYREIDTKSIFLLSQLTLGVKIPDRQKDVLDRIK
JGI12207J13218_1013371	JGI12207J13218_10133711	F006423	KTFKQHLNEKTEYYLDPSKDNTEKYVANDGDYWYVGRVGMKGGSSFLKFVAAHGKDSYFESGKLKKVTPKEIEKDATKSPSIINTVDFKKLYKK*
JGI12207J13218_1014127	JGI12207J13218_10141271	F033215	PLANVAPIGRLRVPPVEERVPAVALIPPLRDKSAAPVTIFSPVLSRVTGCATLRLDILSSSVKAKLAKSSVPTDREALSSIVEFAANRRVVELSGSTPLKSCTPSTSRMPPESVSALAFVVNVVFFVFSVAPVSDKAFCSTNVVSGIEILELKYWYRMEHWLRKRG*
JGI12207J13218_1017823	JGI12207J13218_10178232	F004881	MSYTFFEPSGKPYQECTNPNDPEDKSLCVLVQDGSNFDGAIVRYTTFKLLEQELTGGEIACRYEYEIEVPPHAIKHKITDKEGKEFEXKXGKWVIEILQKQMDKHAAKSRSTDTEKSNT*
JGI12207J13218_1018759	JGI12207J13218_10187591	F089570	NERPSLDLNEKQKTIVDNALSSCSDVNFDDLLNTRKEKLGINEPDKSINKKKQLDNSLGIEVSRSIETIYTPEQSLANVKKILSSINDDRLYPAVAYYIIKDFAFYEHGLCKSLRNHFQTYNIYKEFYFKTKNKELDPIYENENNLNFFYKNTSNARKRLLLAIQSKKRLLEKEQFLLKNLKIF
JGI12207J13218_1019759	JGI12207J13218_10197592	F045803	MLKLFRISILLLFFSLIIPNLXFSNDLIERIKKIEKSVSDAEDAFAIGSKGHFQSLEKLLEVRKKLVKAKDMFAEIKTYENKLETAHYRNTTIRILDDLE
JGI12207J13218_1020409	JGI12207J13218_10204091	F003122	MIELLIFGLVLLSVICLWLLIEGRKSPKFLIWFIPLLLILVSSTYMTYTAIQGYPKFETPKRGLYLKHYIDEPNWIYIWVIDKEQIPISYKIVYSREVHNALEGVKGKSEEGKFMVLGGEETEQAGMQGEEDGEHAGGHTIGGDISFYEWDYESS