3300000908: Forest soil microbial communities from El Dorado National Forest, California, USA - Mediterranean Blodgett CA Ref_M1

Overview

Basic Information

• IMG/M Taxon OID: 3300000908
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0071004 | Gp0054465 | Ga0002409
• Sample Name: Forest soil microbial communities from El Dorado National Forest, California, USA - Mediterranean Blodgett CA Ref_M1
• Sequencing Status: Permanent Draft
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 23944016
• Sequencing Scaffolds: 13
• Novel Protein Genes: 14
• Associated Families: 14

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria	3
Not Available	2
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	2
All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	2
All Organisms → cellular organisms → Bacteria → Acidobacteria	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1
All Organisms → cellular organisms → Bacteria → Proteobacteria	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Forest Soil Microbial Communities From Multiple Locations In Canada And Usa
• Type: Environmental
• Taxonomy: Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil → Forest Soil Microbial Communities From Multiple Locations In Canada And Usa

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): forest biome → solid layer → forest soil
• Earth Microbiome Project Ontology (EMPO): Free-living → Non-saline → Soil (non-saline)

Location Information

• Location: El Dorado National Forest, Georgetown, California, USA
• Coordinates
  • Lat. (^o): 38.88
  • Long. (^o): -120.64
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001022	Metagenome / Metatranscriptome	804	Y
F005917	Metagenome / Metatranscriptome	386	Y
F005924	Metagenome / Metatranscriptome	386	Y
F008734	Metagenome / Metatranscriptome	329	Y
F009926	Metagenome / Metatranscriptome	311	Y
F012266	Metagenome / Metatranscriptome	282	Y
F019015	Metagenome / Metatranscriptome	232	Y
F037348	Metagenome / Metatranscriptome	168	Y
F055459	Metagenome / Metatranscriptome	138	Y
F072634	Metagenome / Metatranscriptome	121	Y
F079175	Metagenome / Metatranscriptome	116	Y
F092656	Metagenome / Metatranscriptome	107	Y
F099613	Metagenome	103	N
F101981	Metagenome / Metatranscriptome	102	Y

Associated Scaffolds

Scaffold	Taxonomy	Length
JGI11915J12861_100129	All Organisms → cellular organisms → Bacteria	1887
JGI11915J12861_100324	Not Available	1414
JGI11915J12861_100991	All Organisms → cellular organisms → Bacteria	906
JGI11915J12861_101013	All Organisms → cellular organisms → Bacteria	895
JGI11915J12861_101800	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	708
JGI11915J12861_101958	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	688
JGI11915J12861_101994	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	682
JGI11915J12861_103741	All Organisms → cellular organisms → Bacteria → Acidobacteria	559
JGI11915J12861_103912	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	553
JGI11915J12861_104249	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	541
JGI11915J12861_104369	Not Available	536
JGI11915J12861_104733	All Organisms → cellular organisms → Bacteria → Proteobacteria	523
JGI11915J12861_105036	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	513

Sequences

Scaffold ID	Protein ID	Family	Sequence
JGI11915J12861_100129	JGI11915J12861_1001291	F101981	MTFVRRCGDNYDGSDCTFAVKPRAFGAPQAALGLDRSAQPSKGLSMPQMQSGDVTK*
JGI11915J12861_100324	JGI11915J12861_1003242	F012266	GALSGSLVSSAPERPCDDVCGLNPLSRKSDSDAADFLD*
JGI11915J12861_100991	JGI11915J12861_1009912	F019015	RLDQFVLDHLAATPIASAVAAVDRETRRQIGTSVMEKLRRYADGDGVTYPEETHVLTAQVR*
JGI11915J12861_101013	JGI11915J12861_1010131	F009926	QASRDRCRSAILEIIMLGSLRVGRWGATSKIGFDHVGEDDARLGDVEGSDGRVHLVETLAAAQKFGIDRADLVEHLAQFAEVGEELADFGVSRIRHVTDARALAGSTDCGKISLGAMPSSVDTVAVGPPAAFVGLDQRAAQYLFDRRQAARKLVATLAKSCR*
JGI11915J12861_101800	JGI11915J12861_1018002	F099613	MAEIIILAERRKARQERRTTNVMAMPFALMAAYMACGAATYAAIVEASTAG
JGI11915J12861_101958	JGI11915J12861_1019581	F005924	NRFPCYRHLMTEKIAYDIYRGTGDRTLRXATLPGAGLPAHLKRKEWALMPKGKSPVHSDADRDIGLRGYCLFQVIESQ*
JGI11915J12861_101994	JGI11915J12861_1019942	F092656	MKDEIDGISDSRRGTPGWMFAAVAVLGVVALVGLVLAHNASTQAQEVQQTLENKVKALQTDFTNQIATIQQHQTQSDAANSGLQSDLSVMTKKLRLTQGDLKKAHAEAAEIKTESEQKIAEMDGAVKTELATKASRDDVKTVDGRVSGVRTDLETTQSDLKMARSELGTLIARN
JGI11915J12861_103741	JGI11915J12861_1037411	F005917	GAEHFMQVRPHLPGYRRLQVFRNAAIRTGVYVGVCLTLVFTAWLVIANHAPFLERFALERNIAAAAILCFLAAVPIFRFLRLPGHLLASGLLGWLIFSLSYRTLCLIFHGLSNRLSTFHVFMLGAVVYMILTTLCWIVATIWRAREANASHPNHHAS*
JGI11915J12861_103912	JGI11915J12861_1039121	F037348	MGHESQIELWSPNLTTFCFVGFGTDRLRREPAMKTADRENPIHGATWARNRAHGAAGQNRTRSIEWAEKQEKFRPKEMCFFLTSPFIELIR
JGI11915J12861_103912	JGI11915J12861_1039122	F008734	DGPSNLGQEDCHHRIDRVEERSVLRRPTSETTNSLSVFDRVRSISGYFSSGGRRVLETLWFESESQLIS*
JGI11915J12861_104249	JGI11915J12861_1042491	F072634	KEFVLAAHEELVRRLIAEQPDITLAELGARLAKKKVLVGKSSISRFLTHLKLPFKKKSAGRRAG*
JGI11915J12861_104369	JGI11915J12861_1043691	F055459	MSIFGRKVDDDFDALTNAIGRLLHGKGADLQRAVLTDIVSRWIMGHHPSSRRQALATHVQAVRDLIELNEEALSARNRGEPEDW*
JGI11915J12861_104733	JGI11915J12861_1047331	F079175	MDMRPGLVRRARQAERLTPSSIIPRAEAIAVTLLILVVALGVMIRSG
JGI11915J12861_105036	JGI11915J12861_1050361	F001022	PLYTCASNRGTGPLMKVVEIVPRERTRLYGMLVAKEAAIRKGGRGTYVRVGRKTQDSTRWKHRNYRGSVQLKRGASEVVTARVRATTPEDERKLLSSFLGFVDRHSGDQVATITIHYR*