Basic Information | |
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Family ID | F079175 |
Family Type | Metagenome / Metatranscriptome |
Number of Sequences | 116 |
Average Sequence Length | 46 residues |
Representative Sequence | MGVQPGPVRRSHRAEPLTPSPIILPAEAIAVMLLILVLALGLMIRSGT |
Number of Associated Samples | 92 |
Number of Associated Scaffolds | 116 |
Quality Assessment | |
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Transcriptomic Evidence | Yes |
Most common taxonomic group | Bacteria |
% of genes with valid RBS motifs | 87.93 % |
% of genes near scaffold ends (potentially truncated) | 21.55 % |
% of genes from short scaffolds (< 2000 bps) | 78.45 % |
Associated GOLD sequencing projects | 84 |
AlphaFold2 3D model prediction | Yes |
3D model pTM-score | 0.42 |
Hidden Markov Model |
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Most Common Taxonomy | |
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Group | Bacteria (91.379 % of family members) |
NCBI Taxonomy ID | 2 |
Taxonomy | All Organisms → cellular organisms → Bacteria |
Most Common Ecosystem | |
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GOLD Ecosystem | Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil (51.724 % of family members) |
Environment Ontology (ENVO) | Unclassified (51.724 % of family members) |
Earth Microbiome Project Ontology (EMPO) | Host-associated → Plant → Plant rhizosphere (51.724 % of family members) |
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Full Alignment |
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Alignment of all the sequences in the family. |
IDLabel .2.4.6.8.10.12.14.16.18.20.22.24.26.28.30.32.34.36.38.40.42.44.46.48.50.52.54 |
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Predicted Topology & Secondary Structure | |||||
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Classification: | Transmembrane (alpha-helical) | Signal Peptide: | No | Secondary Structure distribution: | α-helix: 27.63% β-sheet: 0.00% Coil/Unstructured: 72.37% |
Feature Viewer | |||||
Position : 0 Zoom : x 1 Enter the variants Position Original Variant |
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Structure Viewer | |
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Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100 | pTM-score: 0.42 |
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Visualization |
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All Organisms Unclassified |
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Visualization |
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Groundwater Sediment Soil Groundwater Sediment Watersheds Soil Vadose Zone Soil Soil Grasslands Soil Soil Soil Forest Soil Fen Ectomycorrhiza Boreal Forest Soil |
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Protein ID | Sample Taxon ID | Habitat | Sequence |
A2_c1_00229000 | 2124908043 | Soil | MMDMRPGLVRRAHQTERLTPSPIILPAEAIAVTLLILVVALGLTIR |
A5_c1_01841550 | 2124908044 | Soil | MDLQPGPGRRSHRAESPTPSPIILPAEAIAVMLLILVLALGLMIRSGT |
JGI11915J12861_1047331 | 3300000908 | Forest Soil | MDMRPGLVRRARQAERLTPSSIIPRAEAIAVTLLILVVALGVMIRSG |
Ga0066789_102910093 | 3300005994 | Soil | MNMRPGLVRRAHQTERLTPSPIILPAEAIAVTLLILVVALGLTIRS |
Ga0066790_105298621 | 3300005995 | Soil | MRPGLVRRAHQTERLTPSPIILPTEAIAVTLLILVVALGLTIRS |
Ga0075023_1000633833 | 3300006041 | Watersheds | MDVHSGPVRRAHRAEPLTPSPIILPAEAIAVMLLILVLALGLMIRSGA* |
Ga0075024_1002865652 | 3300006047 | Watersheds | MDIRPGPVRRAHRAEPLTPSPIILPAEAIAVMLLILVLALGLMIRSGA* |
Ga0075028_1001756923 | 3300006050 | Watersheds | MDAHPEPVRRAHRAEPLTPSPIILPVEAIAVMLLILVLALGLMIRSGT* |
Ga0075028_1001769864 | 3300006050 | Watersheds | RAEPLTPSPIILPVEAIAVMLLILVLALGLMIRSGA* |
Ga0075028_1004691813 | 3300006050 | Watersheds | GTVRRAHRAEPLTPSPIILPAEAIAVMLLILVLALGLMIRSGA* |
Ga0075026_1001822463 | 3300006057 | Watersheds | MDIRPGPVRRAHRAEPLTPSPIILPAEAIAVMLLILVLALGLMIRSGK* |
Ga0075018_100076203 | 3300006172 | Watersheds | MDVHPGTVRRAHRAEPLTPSPIILPAEAIAVMLLILVLALGLMIRSGA* |
Ga0099791_103347521 | 3300007255 | Vadose Zone Soil | MDLQPGPVRRSHRAEPLTPSPIILSAEAIAVMFLILVRALGLTIRSGE* |
Ga0099791_104002112 | 3300007255 | Vadose Zone Soil | MDVHPGPVRRAHRAEPLTPSPIILPAEAIAVMLLILVLTLGLMIRSGT* |
Ga0099793_101065212 | 3300007258 | Vadose Zone Soil | MDVHPGPVRRAHRAEPLTPSPIILPAEAITVMLLILVLALGLMVRSGT* |
Ga0099793_102553142 | 3300007258 | Vadose Zone Soil | MEVRPGPVRRSHRAEPLTPSPIILPAEAMVVMLLIFILALGLLIRNGA* |
Ga0099794_100313772 | 3300007265 | Vadose Zone Soil | MDLQPGPVRRSHRAKPLTPSPIILPAEAIAMMLLIFVLALGLMVRSGA* |
Ga0099794_102125912 | 3300007265 | Vadose Zone Soil | MDVQSGLVRRSPRVEPLTPSPVILPAEAIAVTLLIFVLVLGVLIRIGL* |
Ga0099829_100224945 | 3300009038 | Vadose Zone Soil | MGVQPGPVRRSHRAEPLTPSPIILPAEAVAVMLLILVLALGLMIRSGT* |
Ga0099830_104726772 | 3300009088 | Vadose Zone Soil | MDVHRRLVRGLHRAEPLTPSPIILPAEAIAVTLLIFILALGVMLRGGA* |
Ga0099828_102559602 | 3300009089 | Vadose Zone Soil | MGVQPGPVRRSHRAEPLTPSPIILPAEAVAVMLLILVLALGLMIRRGT* |
Ga0099827_104433812 | 3300009090 | Vadose Zone Soil | MDVHPGPVRGAHRAEPLTPSPIILPAEAVAVMLLILVLALGLMVRSGT* |
Ga0099792_100314532 | 3300009143 | Vadose Zone Soil | MDVQPGPVRRSHRAEPLTPSSSPLILPAEALVVALLIFVLALGLMVRSGT* |
Ga0099792_100341543 | 3300009143 | Vadose Zone Soil | MGVQPGPVRRSHRAEPLTPSPIILPAEAVAVMFLILVLALGLMIRSGT* |
Ga0126356_110600481 | 3300010877 | Boreal Forest Soil | MDLQPGPVRRSHRAEPLTPSPIILPAEAIAVMLLIIVLALGLTIRSGT* |
Ga0137392_100537933 | 3300011269 | Vadose Zone Soil | MGVQPGPVRRSHRAEPLTPSPIILPAEAVAVMLLILVLALGLMVRSGT* |
Ga0137463_11985441 | 3300011444 | Soil | MDVHPGPVRRAHRAEPLTPSPIILPAEAIAVMLLI |
Ga0137389_105075093 | 3300012096 | Vadose Zone Soil | MGVQPGPVRRSHRAEPLTPSPIILPAEAIAVMLLILVLALGLMIRSGT* |
Ga0137388_102245642 | 3300012189 | Vadose Zone Soil | MDLQPGPVRRSHRAEPLTPSPIILPAEAIAMMLLIFVLALGLMVRSGA* |
Ga0137388_106417092 | 3300012189 | Vadose Zone Soil | MDAHPEPVRRAHRAEPLTPSPIILPVEAIAVMLLILVLALGLMIRSGK* |
Ga0137388_113022622 | 3300012189 | Vadose Zone Soil | MGVQPGPVRRSHRAEPLTPSPIILPAEAIAVMLLILVLALGLMIRRGT* |
Ga0137364_100002802 | 3300012198 | Vadose Zone Soil | MDAQRGFVRSTRRAKPLTPSPVILPAEALAVMLLIVVVTLGLMTRSGA* |
Ga0137364_102417343 | 3300012198 | Vadose Zone Soil | MGVQPGPVRRSHRAEPLTPSPIILPAEAVAVMLLILVLALGLMIRSST* |
Ga0137382_103882192 | 3300012200 | Vadose Zone Soil | MGVQPGPVRRSHRAEHLTPSPITLPAEAVAVMLLILVLALGLMIRSGS* |
Ga0137365_102368724 | 3300012201 | Vadose Zone Soil | MDMQPGSVRSSHRAAPQAPAPIILPAEAIAVTLLIIVLALGVMIGSSA* |
Ga0137363_115785122 | 3300012202 | Vadose Zone Soil | MDVHPGPVRGAHRAEPLTPCPIILPAEAIAVMLLILVLTLGLMIRSGT* |
Ga0137399_100369291 | 3300012203 | Vadose Zone Soil | MDMRPGLVRRAHQIERLTPSPIIPPAEAIAVTLLILVVALGLTIRS* |
Ga0137362_100202353 | 3300012205 | Vadose Zone Soil | MDPGPVRGAHRAEPLTTSPIILPAEAIAVMLLILVLTLGLMIRSGT* |
Ga0137381_101973024 | 3300012207 | Vadose Zone Soil | SVRRSHRAAPQAPFPIILPAEAIAVTLLIIMLALGVMIRSST* |
Ga0137379_100538148 | 3300012209 | Vadose Zone Soil | MGGQPGPVRRSHRAEPLTPSPIILPAEAVAVMLLILVLALGLMIRSDT* |
Ga0137379_114875332 | 3300012209 | Vadose Zone Soil | MDMQPGSVRSSHRAAPQAPFPIILPAEAIAVTLLIIVLALGVMIRSSA* |
Ga0137378_105505541 | 3300012210 | Vadose Zone Soil | RAAPQAPAPIILPAEAIAVTLLIIVLALGVMIGSSA* |
Ga0137377_1000088223 | 3300012211 | Vadose Zone Soil | MDAQRGLVRSTRRAKPLTPSPVILPAEALAVMLLIVVVTLGLMTRSGA* |
Ga0137386_101563773 | 3300012351 | Vadose Zone Soil | MDMQPGSVRRSHRAAPQAPFPIILPAEAIAVTLLIIMLALGVMIRSSA* |
Ga0137386_102693312 | 3300012351 | Vadose Zone Soil | MGGQPGPVRRSHRAEPLTPSPIILPAEAVAVMLLILVLALGLMIRSST* |
Ga0137385_103076823 | 3300012359 | Vadose Zone Soil | MGVHPGPVRRSHRAEPLTPSPIILPAEAVAVMLLILVLALGLMVRSGT* |
Ga0137385_114522312 | 3300012359 | Vadose Zone Soil | RAEPLTPSPIILPAEAVAVMLLILVLALGLMIRSGT* |
Ga0137361_102634363 | 3300012362 | Vadose Zone Soil | MDPGPVRGAHRAEPLTPCPIILPAEAIAVMLLILVLTLGLMIRSGT* |
Ga0137358_102380252 | 3300012582 | Vadose Zone Soil | MEVRPGPVRRSHRAEPLTPSPIILPAEAMVVMLLVFILALGLLIRNGA* |
Ga0137398_100802312 | 3300012683 | Vadose Zone Soil | MDMRPGLVRRAHQIERLTPSPIIPPAEAIAVTLLILVVARLA* |
Ga0137397_100246522 | 3300012685 | Vadose Zone Soil | MDAQSGLVRRSPRVTPSPIILPAEAIAVTLLIFVLALGVMIRSGA* |
Ga0137397_102124414 | 3300012685 | Vadose Zone Soil | EPLTPSPIILPAEAIAVMLLIIVLALGLTIRSGT* |
Ga0137396_101647102 | 3300012918 | Vadose Zone Soil | MDVQSGLVRRSPRVEPLTPSPIILPAEAIAVTLLIFVLALGVMIRSGA* |
Ga0137394_100179856 | 3300012922 | Vadose Zone Soil | MDAQSGLVRRSPRVEPLTPSPIILPAEAIAVTLLIFVLALGVMIRSGA* |
Ga0137404_102408883 | 3300012929 | Vadose Zone Soil | MDLQPGPVRRSHRAEPLTPSPIILPAEAIAMMLLIFVLALGLMVRSGT* |
Ga0137404_103486902 | 3300012929 | Vadose Zone Soil | MGVQSGPVRRSHRAEPLTLSPIILPAEAVAVMLLILVLALGLMIRSGT* |
Ga0137407_105099252 | 3300012930 | Vadose Zone Soil | MGVQSGPVRRSHRAEPLTPSPIILPAEAVAVMLLILVLALGLMIRSGT* |
Ga0137407_120196421 | 3300012930 | Vadose Zone Soil | MGVQPGPVRRSHRAELLTPSPIILPAEAVAVMLLILVLALGLMIRSGT* |
Ga0137410_119342802 | 3300012944 | Vadose Zone Soil | MDMQSGLIRRSHRAEPPTPFPIILPAEAIAVALLIVILVLGLMIRSGA* |
Ga0137403_105757452 | 3300015264 | Vadose Zone Soil | MDLQPGPVRRSHRAEPLTPSPIILPAEAITMMLLIFVLALGLMVRSGT* |
Ga0184605_101089832 | 3300018027 | Groundwater Sediment | MGVQPGPVRRSHRAEPLTPSPIILPAEAVAVMFLILVLALGLMIRSGT |
Ga0184608_100255111 | 3300018028 | Groundwater Sediment | MDVHPGPVRRAHRAEPLTPSPIILPAEAIAVMLLILVLALGLMVRNGT |
Ga0184620_100733073 | 3300018051 | Groundwater Sediment | MDVHPGPVRRAHRAEPLTPSPIILPAEAIAVMLLILVLALGLMIRSGT |
Ga0184617_11244083 | 3300018066 | Groundwater Sediment | MDLHPGPVRGAHRAEPLTPSPIILPAEAIAVMLLILVLALGLMIRSGT |
Ga0184618_103125742 | 3300018071 | Groundwater Sediment | RSHRAEPLTPSPIILPAEAVAVMFLILVLALGLMIRSGT |
Ga0184632_101996652 | 3300018075 | Groundwater Sediment | MDVQPGPVRRSHRAEPLTPSPIILPVEAIAVMLLILVLAFGLMIRGGA |
Ga0184632_103318722 | 3300018075 | Groundwater Sediment | GPVRRSHRAEPLTPSPIILPVEAIAVMLLILVLALGLMVRSGT |
Ga0184632_103474933 | 3300018075 | Groundwater Sediment | MDVQPGPVRRSHRAEPLTPSPIILPVEAIAVMLLILVLALGL |
Ga0184625_102932442 | 3300018081 | Groundwater Sediment | MDVQPGPVRRSHRAESLTPSPIILPAEAIAVMLLILVLALGLMIRSGT |
Ga0137408_12231921 | 3300019789 | Vadose Zone Soil | MGVQSGPVRRSHRAEPLTLSPIILPAEAVAVMLLILVLALGLMIRSGT |
Ga0137408_12918471 | 3300019789 | Vadose Zone Soil | MDLQPGPVRRSHRAEPLTPSPIILPAEAIAMMLLIFVLALGLMVRSGT |
Ga0193756_10469302 | 3300019866 | Soil | RRAHRAEPLTPSPIILPAEAIAVMLLILVLALGLMIRSGT |
Ga0193704_10495933 | 3300019867 | Soil | MNIRPGPVRRAHRAEPLTPSAIILPAEAIAVMLLILVLALGLMIRSGT |
Ga0193754_10225561 | 3300019872 | Soil | MDVHPGPVRRAHRAEPLTPSPIILPAEAIAVMLLILVLTLGLMIRSGT |
Ga0193744_10028633 | 3300019874 | Soil | MDVQPGPVRRAHRAEPLTPSPIILPVEAIAVMLLILVLALGLMIRSGT |
Ga0193701_11071052 | 3300019875 | Soil | DLHPGPVRGAHRAEPLTPSPIILPAEAVAVMLLILVLALGLMVRNGT |
Ga0193707_10807291 | 3300019881 | Soil | MNIRPGPVRRAHRAEPLTPSPIILPAEAIAVMLLILVLALGLMIRSGT |
Ga0193727_10034762 | 3300019886 | Soil | MDVQPGPVRRAHRAEPLTPSPIILPVETIAVMLLILVLALGLMIRSGT |
Ga0193755_11176612 | 3300020004 | Soil | MDVQSGLVRRSPRVEPLTPSPIILPAEAIAVTLLIFVLALGVMIRSGA |
Ga0179594_102890621 | 3300020170 | Vadose Zone Soil | GPVRRSHRAEPLTPSPIILPAEAVAVMLLILVLALGLMIRSGT |
Ga0210378_103095201 | 3300021073 | Groundwater Sediment | MNIRPGPVRRAHRAEPLTPSPIILPAEAIAVMLLILVLALGLMVRNGT |
Ga0210382_100438473 | 3300021080 | Groundwater Sediment | MGVQPGPVRRSHRAEPLTPSPIILPAEAIAVMLLILVLALGLMIRSGT |
Ga0179589_102051122 | 3300024288 | Vadose Zone Soil | MDVHPGPVRRAHRAEPLTPSPIILPAEAIAVTLLIFVLALGVMIRSGA |
Ga0209240_11104523 | 3300026304 | Grasslands Soil | MDAQSGLVRRSPRVEPLTPSPIILPAEAIAVTLLIFVLALGVMIRSGA |
Ga0257147_10738401 | 3300026475 | Soil | MDMRPGLVRRAHQAERLTPSPIILPAEAIAVMLLI |
Ga0257161_11180571 | 3300026508 | Soil | MDMRAGLGRAHQAERPTPSPIILPAEAIAVTLLILVVALGVMIRSGMTP |
Ga0209648_105412321 | 3300026551 | Grasslands Soil | AEPLTPSPIILPAEAVAVMLLILVLALGLMIRSGT |
Ga0208997_10166342 | 3300027181 | Forest Soil | MGVQPGPVRRSHRAEPLTPSPIILPAEAIAVMFLILVLALGLMIRSGT |
Ga0208983_10197483 | 3300027381 | Forest Soil | MDVHPGPVRRAHRAEPLTPSPIILPAEAIAVMLLIIVLALGLTIRSGT |
Ga0208995_10464862 | 3300027388 | Forest Soil | MGVQPGPVRRSHRAEPLTPSPIILPAEAVAVMLLILVLALGLMIRSGT |
Ga0209179_10401762 | 3300027512 | Vadose Zone Soil | MDVHPGPVRRAHRAEPLTPSPIILPAEAVAVMLLILVLALALMIRSGT |
Ga0208988_11545422 | 3300027633 | Forest Soil | MEVRPGPVRRSHRAEPLTPSPIILPAEAMVVMLLIFILALGLLIRNGA |
Ga0209076_11877561 | 3300027643 | Vadose Zone Soil | MDVHPGPVRRAHRAEPLTPSPIILPAEAITVMLLILVL |
Ga0209588_10058693 | 3300027671 | Vadose Zone Soil | MDLQPGPVRRSHRAKPLTPSPIILPAEAIAMMLLIFVLALGLMVRSGA |
Ga0209588_10159242 | 3300027671 | Vadose Zone Soil | MDVHPGPVRRAHRAEPLTPSPIILPAEAITVMLLILVLALGLMVRSGT |
Ga0208989_100090416 | 3300027738 | Forest Soil | MGVQPGPVRRSHLAEPLTPSPIILPAEAVAVMLLILVLALGLMIRSGT |
Ga0209180_101313492 | 3300027846 | Vadose Zone Soil | MGVQPGPVRRSHRAEPLTPSPIILPAEAVAVMLLILVLALGLMVRSGT |
Ga0209701_104788381 | 3300027862 | Vadose Zone Soil | MGVQPGPVRRSHRAEPLTPSPIILPAEAIAVMLLILV |
Ga0209701_107309151 | 3300027862 | Vadose Zone Soil | RGLHRAEPLTPSPIILPAEAIAVTLLIFILALGVMLRGGA |
Ga0209068_106612261 | 3300027894 | Watersheds | MDVHPGTVRRAHRAEPLTPSPIILPAEAIAVMLLILVLALGLMIRSGA |
Ga0209583_100472073 | 3300027910 | Watersheds | MDVHSGPVRRAHRAEPLTPSPIILPAEAIAVMLLILVLALGLMIRSGA |
Ga0137415_100690676 | 3300028536 | Vadose Zone Soil | MDAQSGLVRRSPRVTPSPIILPAEAIAVTLLIFVLALGVMIRSGA |
Ga0137415_100916864 | 3300028536 | Vadose Zone Soil | MDMRPGLVRRAHQIERLTPSPIIPPAEAIAVTLLILVVARLA |
Ga0137415_106855743 | 3300028536 | Vadose Zone Soil | MDVQPGPVRRSHRAEPLTPSPSPIILPAEAMVVTLLIFVLALGLMIRSTA |
Ga0307504_100301142 | 3300028792 | Soil | MDIRPGPVRRAHRTEPLTPSPIILPAEAIAVMLLILVLALGLMIRSGT |
Ga0307299_102250152 | 3300028793 | Soil | MGVQPGPFRRSHRAEPLTPSPIILPAEAVAVMFLILVLALGLMIRSGT |
Ga0307302_101545382 | 3300028814 | Soil | MGVQPGPVRRSHRAEPLTPSPIILPAEAIAVMLLILVLALGLMVRNGT |
Ga0307310_102599613 | 3300028824 | Soil | MDVQPGPVRRAHRAEPLTPSPIILPAEAVAVMFLILVLALGLMIRSGT |
Ga0307312_106858851 | 3300028828 | Soil | MNIRPGPVRRAHRAEPLTPSPIILPAEAIAVMLLILVLALVLMIRSGT |
Ga0307312_108228882 | 3300028828 | Soil | MDVHPGPVRRAHRTEPLTPSPIILPAEAIAVMLLILVLALGLMVRNGT |
Ga0307277_103653912 | 3300028881 | Soil | MGVQPGPVRRSHRAEPLTPTPIILPAEAVAVMFLILVLALGLMIRSGT |
Ga0311334_102623933 | 3300029987 | Fen | MDVQPRLVRRPHQAEPLTPSPVILPAEAIAVTLLIFILALGVMIRSGA |
Ga0307509_104466602 | 3300031507 | Ectomycorrhiza | MEVPPEPVHWSDCREPLTPYPIILPAEAMAVTLLILVLALGLMLRNGA |
Ga0307508_100780153 | 3300031616 | Ectomycorrhiza | MDVRRGSVHRVHRAEPLMPSSIILAAEALAVTLLIFILVLGLMIRTGA |
Ga0307510_100902534 | 3300033180 | Ectomycorrhiza | MEVPPEPVRWSDCREPLTPYPIILPAEAMAVTLLILVLALGLMLRNGA |
Ga0307510_103557982 | 3300033180 | Ectomycorrhiza | MDIRPGPVRRAHRAEPLTPSPIILPAEAITVMLLILVLALGLMVRSGT |
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